mRNA_H-elongata_contig112269.997.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig112269.997.1
Unique Name	mRNA_H-elongata_contig112269.997.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

[Close]

BLAST of mRNA_H-elongata_contig112269.997.1 vs. uniprot
Match: UPI001C155DC1 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C155DC1)

HSP 1 Score: 66.6 bits (161), Expect = 1.630e-12
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1

Query:   28 FPNVYKLVKLCIVLPHSSVECERGFSAQNRIKSKVRNRLSVERLELLMRISL 183
            FPN+ KL++L   +P SSVECERGFS QN+IK+K RN L+ + L+ LMRISL
Sbjct:   56 FPNIIKLIQLVYCIPFSSVECERGFSRQNQIKTKSRNSLTTDTLDRLMRISL 107

[Close]

BLAST of mRNA_H-elongata_contig112269.997.1 vs. uniprot
Match: A0A8H3LT90_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3LT90_9GLOM)

HSP 1 Score: 66.2 bits (160), Expect = 4.210e-12
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 1

Query:   28 FPNVYKLVKLCIVLPHSSVECERGFSAQNRIKSKVRNRLSVERLELLMRISL 183
            FPN+ KL+++   +P SSVECERGFS QN+IK+K RN L+   L++LMR+SL
Sbjct:   86 FPNIIKLIQIVYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMRVSL 137

[Close]

BLAST of mRNA_H-elongata_contig112269.997.1 vs. uniprot
Match: C3Z810_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z810_BRAFL)

HSP 1 Score: 65.9 bits (159), Expect = 4.460e-11
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 1

Query:    1 LKALPGGAYFPNVYKLVKLCIVLPHSSVECERGFSAQNRIKSKVRNRLSVERLELLMRISL 183
            L+ + G   FPN+ KL  +  +LP  + +CERGFS QNRIK+++RN LSV+RL++LMRI++
Sbjct:  305 LERVHGSELFPNLLKLATVGRLLPMHTADCERGFSTQNRIKTRLRNALSVKRLDILMRIAI 365

[Close]

BLAST of mRNA_H-elongata_contig112269.997.1 vs. uniprot
Match: A0A3B1J4P0_ASTMX (TTF-type domain-containing protein n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1J4P0_ASTMX)

HSP 1 Score: 64.7 bits (156), Expect = 1.130e-10
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1

Query:   13 PGGAYFPNVYKLVKLCIVLPHSSVECERGFSAQNRIKSKVRNRLSVERLELLMRIS 180
            P  + F N++ L ++ +VLP S+ +CERGFSAQNRIKSKVRN L+V  +E L+RIS
Sbjct:  550 PYCSDFQNIFHLAEIMLVLPISAAQCERGFSAQNRIKSKVRNSLNVSTVEDLVRIS 605

[Close]

BLAST of mRNA_H-elongata_contig112269.997.1 vs. uniprot
Match: A0A015J8B3_RHIIW (Uncharacterized protein n=13 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015J8B3_RHIIW)

HSP 1 Score: 63.9 bits (154), Expect = 2.100e-10
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 1

Query:   28 FPNVYKLVKLCIVLPHSSVECERGFSAQNRIKSKVRNRLSVERLELLMRISL 183
            FPN+ KL+++   +P SSVECERGFS QN+IK+K RN L+   L++LM ISL
Sbjct:  544 FPNIIKLIQIAYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMCISL 595

[Close]

BLAST of mRNA_H-elongata_contig112269.997.1 vs. uniprot
Match: UPI001C19C353 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C19C353)

HSP 1 Score: 63.9 bits (154), Expect = 2.120e-10
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 1

Query:   28 FPNVYKLVKLCIVLPHSSVECERGFSAQNRIKSKVRNRLSVERLELLMRISL 183
            FPN+ KL+++   +P SSVECERGFS QN+IK+K RN L+   L++LM ISL
Sbjct:  614 FPNIIKLIQIAYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMCISL 665

[Close]

BLAST of mRNA_H-elongata_contig112269.997.1 vs. uniprot
Match: UPI001E1D51CC (zinc finger protein 862-like n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D51CC)

HSP 1 Score: 63.5 bits (153), Expect = 2.880e-10
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1

Query:   28 FPNVYKLVKLCIVLPHSSVECERGFSAQNRIKSKVRNRLSVERLELLMRIS 180
            FPN+  ++K C VLP SSV+CERGFS QNRI S++RNRL+ + L+  MRIS
Sbjct:  551 FPNMVTILKCCSVLPMSSVKCERGFSTQNRIMSRLRNRLNNQALDDQMRIS 601

[Close]

BLAST of mRNA_H-elongata_contig112269.997.1 vs. uniprot
Match: A0A2Z6RJ54_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6RJ54_9GLOM)

HSP 1 Score: 62.4 bits (150), Expect = 4.110e-10
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 1

Query:   28 FPNVYKLVKLCIVLPHSSVECERGFSAQNRIKSKVRNRLSVERLELLMRISL 183
            F N+ KL++L   +P SSVECERGFS QN+IK+K RN L+ + L+ LMRISL
Sbjct:  171 FLNIIKLIQLIYCIPFSSVECERGFSRQNQIKTKNRNSLTTDTLDRLMRISL 222

[Close]

BLAST of mRNA_H-elongata_contig112269.997.1 vs. uniprot
Match: UPI0011C0D78D (zinc finger protein 862-like n=1 Tax=Sparus aurata TaxID=8175 RepID=UPI0011C0D78D)

HSP 1 Score: 58.5 bits (140), Expect = 1.970e-9
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 1

Query:   13 PGGAYFPNVYKLVKLCIVLPHSSVECERGFSAQNRIKSKVRNRLSVERLELLMRISL 183
            P    + N+ +LV + +VLP S+ +CERGFSAQNRIK+  R+ L+V   E LMRISL
Sbjct:   32 PYKTDYRNILELVMIMLVLPISAAQCERGFSAQNRIKTSTRSSLAVSTTEDLMRISL 88

[Close]

BLAST of mRNA_H-elongata_contig112269.997.1 vs. uniprot
Match: A0A8B6EWY7_MYTGA (Nuclear pore complex protein Nup188 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EWY7_MYTGA)

HSP 1 Score: 59.7 bits (143), Expect = 2.110e-9
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1

Query:   28 FPNVYKLVKLCIVLPHSSVECERGFSAQNRIKSKVRNRLSVERLELLMRISL 183
            FPN   L+++  +LP SSVECERGFS QN IK+K+R  L ++ L+ LMRISL
Sbjct:   99 FPNAISLMEISRILPVSSVECERGFSRQNIIKTKLRCSLGIDALDQLMRISL 150

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig112269.997.1 vs. uniprot

BLAST of mRNA_H-elongata_contig112269.997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
UPI001C155DC1	1.630e-12	61.54	Hypothetical protein n=1 Tax=Rhizophagus irregular...	[more]
A0A8H3LT90_9GLOM	4.210e-12	57.69	Zinc finger protein 862-like n=1 Tax=Rhizophagus c...	[more]
C3Z810_BRAFL	4.460e-11	50.82	Uncharacterized protein n=1 Tax=Branchiostoma flor...	[more]
A0A3B1J4P0_ASTMX	1.130e-10	57.14	TTF-type domain-containing protein n=1 Tax=Astyana...	[more]
A0A015J8B3_RHIIW	2.100e-10	57.69	Uncharacterized protein n=13 Tax=Rhizophagus irreg...	[more]
UPI001C19C353	2.120e-10	57.69	Hypothetical protein n=1 Tax=Rhizophagus irregular...	[more]
UPI001E1D51CC	2.880e-10	60.78	zinc finger protein 862-like n=2 Tax=Mercenaria me...	[more]
A0A2Z6RJ54_9GLOM	4.110e-10	59.62	Zinc finger protein 862-like n=1 Tax=Rhizophagus c...	[more]
UPI0011C0D78D	1.970e-9	52.63	zinc finger protein 862-like n=1 Tax=Sparus aurata...	[more]
A0A8B6EWY7_MYTGA	2.110e-9	57.69	Nuclear pore complex protein Nup188 n=1 Tax=Mytilu...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig112269	contig	H-elongata_contig112269:1835..2017 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Metazoa
Seed ortholog score	65.5
Seed ortholog evalue	1e-08
Seed eggNOG ortholog	7739.XP_002595312.1
Preferred name	NUP188
KEGG ko	ko:K14311
KEGG TC	1.I.1
KEGG Pathway	ko03013,map03013
KEGG Module	M00427
GOs	GO:0001667,GO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006996,GO:0006997,GO:0006999,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0010631,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016032,GO:0016043,GO:0016477,GO:0017038,GO:0017056,GO:0031503,GO:0031967,GO:0031975,GO:0032501,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0040011,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044611,GO:0045184,GO:0046907,GO:0048870,GO:0050657,GO:0050658,GO:0051028,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0090130,GO:0090132,GO:0090521
EggNOG free text desc.	Nucleoporin NUP188 homolog
EggNOG OGs	38ETV@33154,3BES7@33208,3CZUR@33213,483SU@7711,KOG4833@1,KOG4833@2759
COG Functional cat.	Q
Best tax level	Chordata
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko03019
Hectar predicted targeting category	other localisation
Exons	1
Model size	183
Cds size	183
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929644.4654148-CDS-H-elongata_contig112269:1834..2017	1622929644.4654148-CDS-H-elongata_contig112269:1834..2017	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig112269 1835..2017 -
1691679103.4235725-CDS-H-elongata_contig112269:1834..2017	1691679103.4235725-CDS-H-elongata_contig112269:1834..2017	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig112269 1835..2017 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig112269.997.1	prot_H-elongata_contig112269.997.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig112269 1835..2017 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig112269:1835..2017-
coding sequence from alignment at H-elongata_contig112269:1835..2017-

protein sequence of mRNA_H-elongata_contig112269.997.1

>prot_H-elongata_contig112269.997.1 ID=prot_H-elongata_contig112269.997.1|Name=mRNA_H-elongata_contig112269.997.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
LKALPGGAYFPNVYKLVKLCIVLPHSSVECERGFSAQNRIKSKVRNRLSV
ERLELLMRISL

mRNA from alignment at H-elongata_contig112269:1835..2017-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig112269.997.1 ID=mRNA_H-elongata_contig112269.997.1|Name=mRNA_H-elongata_contig112269.997.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig112269:1835..2017- (Himanthalia elongata Himel1 dioecious)
CTCAAGGCTTTGCCAGGGGGGGCATACTTCCCCAACGTGTACAAGCTCGT
GAAGCTGTGTATTGTGCTGCCTCACTCTTCCGTAGAATGCGAGCGCGGGT
TTTCGGCGCAGAACCGCATTAAGTCGAAAGTGCGGAACCGCTTGTCAGTT
GAGAGACTTGAGCTACTGATGCGCATTTCTTTG

Coding sequence (CDS) from alignment at H-elongata_contig112269:1835..2017-

>mRNA_H-elongata_contig112269.997.1 ID=mRNA_H-elongata_contig112269.997.1|Name=mRNA_H-elongata_contig112269.997.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig112269:1835..2017- (Himanthalia elongata Himel1 dioecious)
CTCAAGGCTTTGCCAGGGGGGGCATACTTCCCCAACGTGTACAAGCTCGT
GAAGCTGTGTATTGTGCTGCCTCACTCTTCCGTAGAATGCGAGCGCGGGT
TTTCGGCGCAGAACCGCATTAAGTCGAAAGTGCGGAACCGCTTGTCAGTT
GAGAGACTTGAGCTACTGATGCGCATTTCTTTGCTCAAGGCTTTGCCAGG
GGGGGCATACTTCCCCAACGTGTACAAGCTCGTGAAGCTGTGTATTGTGC
TGCCTCACTCTTCCGTAGAATGCGAGCGCGGGTTTTCGGCGCAGAACCGC
ATTAAGTCGAAAGTGCGGAACCGCTTGTCAGTTGAGAGACTTGAGCTACT
GATGCGCATTTCTTTG