mRNA_H-elongata_contig111342.931.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111342.931.1
Unique NamemRNA_H-elongata_contig111342.931.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111342.931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111342contigH-elongata_contig111342:202..1768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size742
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111342.931.1prot_H-elongata_contig111342.931.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111342 214..1452 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929637.5714612-UTR-H-elongata_contig111342:201..2131622929637.5714612-UTR-H-elongata_contig111342:201..213Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig111342 202..213 +
1691679100.8323383-UTR-H-elongata_contig111342:201..2131691679100.8323383-UTR-H-elongata_contig111342:201..213Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig111342 202..213 +
1622929637.6250362-UTR-H-elongata_contig111342:1452..17681622929637.6250362-UTR-H-elongata_contig111342:1452..1768Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig111342 1453..1768 +
1691679100.859515-UTR-H-elongata_contig111342:1452..17681691679100.859515-UTR-H-elongata_contig111342:1452..1768Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig111342 1453..1768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929637.586058-CDS-H-elongata_contig111342:213..4891622929637.586058-CDS-H-elongata_contig111342:213..489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111342 214..489 +
1691679100.840494-CDS-H-elongata_contig111342:213..4891691679100.840494-CDS-H-elongata_contig111342:213..489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111342 214..489 +
1622929637.6078587-CDS-H-elongata_contig111342:1314..14521622929637.6078587-CDS-H-elongata_contig111342:1314..1452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111342 1315..1452 +
1691679100.849982-CDS-H-elongata_contig111342:1314..14521691679100.849982-CDS-H-elongata_contig111342:1314..1452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111342 1315..1452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111342.931.1

>prot_H-elongata_contig111342.931.1 ID=prot_H-elongata_contig111342.931.1|Name=mRNA_H-elongata_contig111342.931.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp
MSLPVANPTNEPHVPQATGTASPRDQFCVYCKSEFRGVAICQLCKETYPH
AAEVKYNDGSPSNLMHHLNAEKPEHKELYRELRWEQQEGEQKLVECEYFK
EFFMQVSKVKDPKLPTWRQLLDHFEETRDDLYQAPGR*
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mRNA from alignment at H-elongata_contig111342:202..1768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111342.931.1 ID=mRNA_H-elongata_contig111342.931.1|Name=mRNA_H-elongata_contig111342.931.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1567bp|location=Sequence derived from alignment at H-elongata_contig111342:202..1768+ (Himanthalia elongata Himel1 dioecious)
CACCACAACAACATGAGCTTGCCAGTGGCGAACCCCACCAACGAGCCACA
CGTGCCTCAGGCGACTGGAACCGCTAGCCCTAGGGACCAGTTTTGCGTGT
ACTGCAAGAGCGAATTTCGCGGTGTCGCGATCTGCCAGCTTTGCAAGGAG
ACGTACCCACATGCCGCGGAGGTTAAGTACAACGATGGCTCCCCCTCTAA
CTTGATGCATCATCTCAATGCCGAGAAGCCGGAACATAAGGAACTCTACC
GGGAGTTACGGTGGGAGCAGCAAGAGGGAGAACAGAAGGTGCAGGGTGCG
GGTTCAATCGAGTCATTTATCGTATGATCCAAGATGACGTGGAAGCAATC
GTTTGTCCAGTGCATGTCGCATAACAATCTACTTTTTTCGGTGAGTCTCT
CGAGAGATGCAGACATCAGTAGCGCGTGCATATTATACAAACACAACAGT
AGACAGTAGTACTGTACTACTGTACTGTTATATTGTATTATACATTGGAC
AAGAGTAGTAGTACGCGGAACGTACACAAATGCGTGAAGCATGAGGCGTG
AAACACACGATACACGATACAACAGCAGTGCAACAACGCTCGTTTTCCAG
CGATTTATTTGCACGACACTACTGTAGTACTGTAGTAGTGGCCATTTTGC
CACGCTACATCGCTGTGGCCCATGTATAGTAGTACAACCTCGTAGCGGTA
CTACTGTGCGTAGCATGACAACAACAGTACAGCCGTACTGTACACTCAAG
TTGGTTGCAGTGCTACTGCATTTAACAGTGTAGTCTCAAGTGTGGAGCGT
ACCTTTTTTCGAAATTATATACGCATGACCAATGCGTCCTTAGTACAGCA
GTTGGTAGCACGATCGACGATCGACCATGGGTATTATAGTACACGCTACA
CAGTACGGGTGCTACAGTAGTAGTAGTACCGCCCAGTATCTCGTGACCAG
GTAGCTGTACCGAATGCAACGACACACGACATTGTAGTACCATAACCGGT
GATCAACAACAAGAATAACAACAACACACTTAGTTTATGTCTCACACGAA
TCATGCGAACAATCAGCTGATCAGTCGACCCCATTGTCCTCTCTACCTGT
CATTTATCTGCAGCTGGTGGAATGCGAATACTTCAAAGAGTTTTTCATGC
AGGTCAGCAAAGTAAAAGATCCTAAGCTACCCACCTGGCGCCAGCTTCTC
GATCACTTTGAGGAAACACGTGATGATTTGTATCAGGCGCCAGGGAGGTG
ATGAAATGACGCCAAAATGCATAATTTTTCTGCCTCCGGCGGCTTTCCGG
CGATTCCCTCACCAGCCGGGGGAGGCTGATGGCGAACTTGCTGCTCGAGT
TCGTACATCGTGCAAAAACATCGGACATCGACTACGCCGATATCCGACGT
TTTTTACATCGGAAAACACAGCAGATGCACAACACTAAAAACAAGCATTC
AAGCGCTTTATGATACTATTCCGGGTTGTTGTTGGTTTTTGCTTATTTAT
ATGGCGGCCTAAACCTGGCCTCATTTTGTCAAATAGTGTGTTATCGGTAT
TTGATAAAGTGATGTCG
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Coding sequence (CDS) from alignment at H-elongata_contig111342:202..1768+

>mRNA_H-elongata_contig111342.931.1 ID=mRNA_H-elongata_contig111342.931.1|Name=mRNA_H-elongata_contig111342.931.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig111342:202..1768+ (Himanthalia elongata Himel1 dioecious)
ATGAGCTTGCCAGTGGCGAACCCCACCAACGAGCCACACGTGCCTCAGGC
GACTGGAACCGCTAGCCCTAGGGACCAGTTTTGCGTGTACTGCAAGAGCG
AATTTCGCGGTGTCGCGATCTGCCAGCTTTGCAAGGAGACGTACCCACAT
GCCGCGGAGGTTAAGTACAACGATGGCTCCCCCTCTAACTTGATGCATCA
TCTCAATGCCGAGAAGCCGGAACATAAGGAACTCTACCGGGAGTTACGGT
GGGAGCAGCAAGAGGGAGAACAGAAGATGAGCTTGCCAGTGGCGAACCCC
ACCAACGAGCCACACGTGCCTCAGGCGACTGGAACCGCTAGCCCTAGGGA
CCAGTTTTGCGTGTACTGCAAGAGCGAATTTCGCGGTGTCGCGATCTGCC
AGCTTTGCAAGGAGACGTACCCACATGCCGCGGAGGTTAAGTACAACGAT
GGCTCCCCCTCTAACTTGATGCATCATCTCAATGCCGAGAAGCCGGAACA
TAAGGAACTCTACCGGGAGTTACGGTGGGAGCAGCAAGAGGGAGAACAGA
AGCTGGTGGAATGCGAATACTTCAAAGAGTTTTTCATGCAGGTCAGCAAA
GTAAAAGATCCTAAGCTACCCACCTGGCGCCAGCTTCTCGATCACTTTGA
GGAAACACGTGATGATTTGTATCAGGCGCCAGGGAGGTGACTGGTGGAAT
GCGAATACTTCAAAGAGTTTTTCATGCAGGTCAGCAAAGTAAAAGATCCT
AAGCTACCCACCTGGCGCCAGCTTCTCGATCACTTTGAGGAAACACGTGA
TGATTTGTATCAGGCGCCAGGGAGGTGA
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