mRNA_H-elongata_contig111178.917.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111178.917.1
Unique NamemRNA_H-elongata_contig111178.917.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111178.917.1 vs. uniprot
Match: D7FH49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH49_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 5.250e-10
Identity = 39/74 (52.70%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:    1 LGAYVNDKQFLFVALVSRSWRIAWGQRPTFTRRVTPHSSASQLVESLKSGLPRER-SICSQAARLGNLRALQFA 219
            L  +V DKQFLF A VSRSWR AWG+R T T  VTPH++  QL  S   GL R+    C   AR GNL  L++A
Sbjct:   29 LAQFVLDKQFLFFAAVSRSWRDAWGERATVTSWVTPHTTPFQLQYSFACGLARDGVDWCLTTARAGNLDLLRWA 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111178.917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH49_ECTSI5.250e-1052.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111178contigH-elongata_contig111178:963..1874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size912
Cds size912
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.4310257-CDS-H-elongata_contig111178:962..18741622929636.4310257-CDS-H-elongata_contig111178:962..1874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111178 963..1874 +
1691679100.5227735-CDS-H-elongata_contig111178:962..18741691679100.5227735-CDS-H-elongata_contig111178:962..1874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111178 963..1874 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111178.917.1prot_H-elongata_contig111178.917.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111178 963..1874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111178.917.1

>prot_H-elongata_contig111178.917.1 ID=prot_H-elongata_contig111178.917.1|Name=mRNA_H-elongata_contig111178.917.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=304bp
LGAYVNDKQFLFVALVSRSWRIAWGQRPTFTRRVTPHSSASQLVESLKSG
LPRERSICSQAARLGNLRALQFALENGCPWNESTCAGAAAGGHLEVLQWA
RTEGCPWDSMTCAEAAGGGHLAILQWARANGCDWYDHTCSRAAAGGHLDI
LQWARANGCPWDLKTCSEAARGGHLELLKWARAHDCPWNGETCSRAARNG
HLDVLMWARANGCSWNKWTCSKAAEGGHLRLLRWARLNDCPWDTWTCAEA
AAGGHLDVLLWARANGCPWDGWTYALAKKGGHDHVLEWASCNGCPAGEIF
LRE*
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mRNA from alignment at H-elongata_contig111178:963..1874+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111178.917.1 ID=mRNA_H-elongata_contig111178.917.1|Name=mRNA_H-elongata_contig111178.917.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=912bp|location=Sequence derived from alignment at H-elongata_contig111178:963..1874+ (Himanthalia elongata Himel1 dioecious)
CTTGGGGCATACGTGAACGACAAGCAGTTCCTCTTCGTCGCTCTCGTGTC
GAGATCCTGGAGGATCGCGTGGGGACAACGGCCGACATTTACGCGCCGCG
TCACTCCTCACTCTTCGGCATCCCAGCTTGTCGAGAGCTTAAAAAGTGGT
TTGCCTCGGGAGCGATCCATTTGTAGTCAAGCCGCTCGCCTTGGAAACCT
AAGAGCCCTTCAATTCGCGCTTGAGAACGGTTGCCCTTGGAATGAATCAA
CGTGTGCTGGGGCCGCCGCAGGGGGGCACTTGGAAGTCCTCCAATGGGCC
CGAACCGAAGGCTGTCCGTGGGACTCTATGACTTGCGCTGAGGCTGCCGG
CGGAGGTCATTTGGCTATTCTCCAATGGGCGCGGGCAAATGGCTGCGACT
GGTATGATCATACGTGCAGTCGGGCAGCTGCTGGAGGGCACCTGGATATT
CTGCAATGGGCCCGGGCAAACGGGTGCCCTTGGGATCTTAAAACCTGCAG
TGAGGCTGCCAGAGGAGGGCACCTTGAGCTTCTTAAGTGGGCGCGGGCTC
ATGATTGTCCCTGGAACGGTGAAACGTGCAGCAGAGCAGCCCGAAATGGG
CACCTGGATGTTCTCATGTGGGCGCGGGCAAATGGCTGCTCGTGGAATAA
GTGGACATGCAGCAAGGCTGCGGAAGGTGGGCATCTGCGACTGCTTCGGT
GGGCGCGCTTGAATGACTGCCCGTGGGATACATGGACGTGCGCCGAGGCC
GCGGCCGGAGGCCACCTCGATGTCCTTCTATGGGCGAGAGCGAATGGATG
TCCCTGGGATGGCTGGACGTACGCTCTGGCCAAGAAAGGGGGGCACGACC
ACGTGCTTGAATGGGCGAGCTGCAATGGATGCCCAGCGGGTGAAATTTTT
CTCAGGGAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig111178:963..1874+

>mRNA_H-elongata_contig111178.917.1 ID=mRNA_H-elongata_contig111178.917.1|Name=mRNA_H-elongata_contig111178.917.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1824bp|location=Sequence derived from alignment at H-elongata_contig111178:963..1874+ (Himanthalia elongata Himel1 dioecious)
CTTGGGGCATACGTGAACGACAAGCAGTTCCTCTTCGTCGCTCTCGTGTC
GAGATCCTGGAGGATCGCGTGGGGACAACGGCCGACATTTACGCGCCGCG
TCACTCCTCACTCTTCGGCATCCCAGCTTGTCGAGAGCTTAAAAAGTGGT
TTGCCTCGGGAGCGATCCATTTGTAGTCAAGCCGCTCGCCTTGGAAACCT
AAGAGCCCTTCAATTCGCGCTTGAGAACGGTTGCCCTTGGAATGAATCAA
CGTGTGCTGGGGCCGCCGCAGGGGGGCACTTGGAAGTCCTCCAATGGGCC
CGAACCGAAGGCTGTCCGTGGGACTCTATGACTTGCGCTGAGGCTGCCGG
CGGAGGTCATTTGGCTATTCTCCAATGGGCGCGGGCAAATGGCTGCGACT
GGTATGATCATACGTGCAGTCGGGCAGCTGCTGGAGGGCACCTGGATATT
CTGCAATGGGCCCGGGCAAACGGGTGCCCTTGGGATCTTAAAACCTGCAG
TGAGGCTGCCAGAGGAGGGCACCTTGAGCTTCTTAAGTGGGCGCGGGCTC
ATGATTGTCCCTGGAACGGTGAAACGTGCAGCAGAGCAGCCCGAAATGGG
CACCTGGATGTTCTCATGTGGGCGCGGGCAAATGGCTGCTCGTGGAATAA
GTGGACATGCAGCAAGGCTGCGGAAGGTGGGCATCTGCGACTGCTTCGGT
GGGCGCGCTTGAATGACTGCCCGTGGGATACATGGACGTGCGCCGAGGCC
GCGGCCGGAGGCCACCTCGATGTCCTTCTATGGGCGAGAGCGAATGGATG
TCCCTGGGATGGCTGGACGTACGCTCTGGCCAAGAAAGGGGGGCACGACC
ACGTGCTTGAATGGGCGAGCTGCAATGGATGCCCAGCGGGTGAAATTTTT
CTCAGGGAATAACTTGGGGCATACGTGAACGACAAGCAGTTCCTCTTCGT
CGCTCTCGTGTCGAGATCCTGGAGGATCGCGTGGGGACAACGGCCGACAT
TTACGCGCCGCGTCACTCCTCACTCTTCGGCATCCCAGCTTGTCGAGAGC
TTAAAAAGTGGTTTGCCTCGGGAGCGATCCATTTGTAGTCAAGCCGCTCG
CCTTGGAAACCTAAGAGCCCTTCAATTCGCGCTTGAGAACGGTTGCCCTT
GGAATGAATCAACGTGTGCTGGGGCCGCCGCAGGGGGGCACTTGGAAGTC
CTCCAATGGGCCCGAACCGAAGGCTGTCCGTGGGACTCTATGACTTGCGC
TGAGGCTGCCGGCGGAGGTCATTTGGCTATTCTCCAATGGGCGCGGGCAA
ATGGCTGCGACTGGTATGATCATACGTGCAGTCGGGCAGCTGCTGGAGGG
CACCTGGATATTCTGCAATGGGCCCGGGCAAACGGGTGCCCTTGGGATCT
TAAAACCTGCAGTGAGGCTGCCAGAGGAGGGCACCTTGAGCTTCTTAAGT
GGGCGCGGGCTCATGATTGTCCCTGGAACGGTGAAACGTGCAGCAGAGCA
GCCCGAAATGGGCACCTGGATGTTCTCATGTGGGCGCGGGCAAATGGCTG
CTCGTGGAATAAGTGGACATGCAGCAAGGCTGCGGAAGGTGGGCATCTGC
GACTGCTTCGGTGGGCGCGCTTGAATGACTGCCCGTGGGATACATGGACG
TGCGCCGAGGCCGCGGCCGGAGGCCACCTCGATGTCCTTCTATGGGCGAG
AGCGAATGGATGTCCCTGGGATGGCTGGACGTACGCTCTGGCCAAGAAAG
GGGGGCACGACCACGTGCTTGAATGGGCGAGCTGCAATGGATGCCCAGCG
GGTGAAATTTTTCTCAGGGAATAA
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