prot_H-elongata_contig111149.912.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig111149.912.1
Unique Nameprot_H-elongata_contig111149.912.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length118
Homology
BLAST of mRNA_H-elongata_contig111149.912.1 vs. uniprot
Match: W2WEK3_PHYPR (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora parasitica CJ01A1 TaxID=1317063 RepID=W2WEK3_PHYPR)

HSP 1 Score: 92.4 bits (228), Expect = 2.000e-19
Identity = 49/112 (43.75%), Postives = 73/112 (65.18%), Query Frame = 0
Query:    1 MWAATMTRPDISFAAHQLAKFNDTPGPTHWRATQKALQYLWRTRDLGITYGGEPGGGCKLSAWFDADYGTFPGTRRSVSGGAVMMAGGAISLFSRVQKVTAAASSESEYAAL 112
            ++  T TRPD+++   QL++F + PG  HW+A  + L+YL  TR+LGI Y G   G  KL+A+ DAD+G+ P  RRSVSG  V ++G  +   S+ Q+  A +S+E+EY AL
Sbjct: 1010 LYITTCTRPDVAYIVTQLSRFLENPGQQHWKAAIRVLRYLKGTRELGIVYSGTSSG-VKLTAYTDADWGSNPDDRRSVSGTMVTISGAPVIFKSKYQRTVALSSAEAEYMAL 1120          
BLAST of mRNA_H-elongata_contig111149.912.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 3.790e-19
Identity = 50/118 (42.37%), Postives = 72/118 (61.02%), Query Frame = 0
Query:    1 MWAATMTRPDISFAAHQLAKFNDTPGPTHWRATQKALQYLWRTRDLGITYGGEPGGGCKLSAWFDADYGTFPGTRRSVSGGAVMMAGGAISLFSRVQKVTAAASSESEYAALAEMVNE 118
            +W A +TRPDI+ +   +A+++  P   HW+A    L Y +RT  LGI++      G  L A+ DADY +    RRSVSGG VM AGGAI+ FS+ Q     ++++SEY A+A+M  E
Sbjct:  542 LWIALLTRPDIANSVRAVARYSSAPKLIHWKAALSILGYAFRTSSLGISFQRGTVSGFTLIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQTCVTLSTTQSEYVAMADMGKE 659          
BLAST of mRNA_H-elongata_contig111149.912.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.270e-18
Identity = 50/118 (42.37%), Postives = 69/118 (58.47%), Query Frame = 0
Query:    1 MWAATMTRPDISFAAHQLAKFNDTPGPTHWRATQKALQYLWRTRDLGITYGGEPGGGCKLSAWFDADYGTFPGTRRSVSGGAVMMAGGAISLFSRVQKVTAAASSESEYAALAEMVNE 118
            +W A +TRPDI+ A   +A++   P   HWRA    L Y  RT   GI++      G  L  + DADY +    RRSVSGG VM AGGAI+ FS+ QK    +++++EY A+A+M  E
Sbjct:  171 LWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKE 288          
BLAST of mRNA_H-elongata_contig111149.912.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 5.920e-18
Identity = 50/118 (42.37%), Postives = 69/118 (58.47%), Query Frame = 0
Query:    1 MWAATMTRPDISFAAHQLAKFNDTPGPTHWRATQKALQYLWRTRDLGITYGGEPGGGCKLSAWFDADYGTFPGTRRSVSGGAVMMAGGAISLFSRVQKVTAAASSESEYAALAEMVNE 118
            +W A +TRPDI+ A   +A++   P   HWRA    L Y  RT   GI++      G  L  + DADY +    RRSVSGG VM AGGAI+ FS+ QK    +++++EY A+A+M  E
Sbjct:  475 LWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKE 592          
BLAST of mRNA_H-elongata_contig111149.912.1 vs. uniprot
Match: A0A6H5KKT4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT4_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 8.180e-18
Identity = 47/115 (40.87%), Postives = 70/115 (60.87%), Query Frame = 0
Query:    1 MWAATMTRPDISFAAHQLAKFNDTPGPTHWRATQKALQYLWRTRDLGITYGGEPGGGCKLSAWFDADYGTFPGTRRSVSGGAVMMAGGAISLFSRVQKVTAAASSESEYAALAEM 115
            +W A +TRPDI+ +   +A++   P   HW+A +  L Y+ R   LG ++      G  L A+ DADY +    RRSVSGG VM AGGAI+ FS+ QK    +++++EY A+A+M
Sbjct:  693 LWIALLTRPDIANSVRAVARYCSAPTLIHWKAARSILGYVVRASSLGTSFQRGTVSGSSLIAFVDADYASRAAHRRSVSGGVVMYAGGAIAWFSKTQKCVTLSTTQAEYVAMADM 807          
BLAST of mRNA_H-elongata_contig111149.912.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.140e-17
Identity = 47/118 (39.83%), Postives = 70/118 (59.32%), Query Frame = 0
Query:    1 MWAATMTRPDISFAAHQLAKFNDTPGPTHWRATQKALQYLWRTRDLGITYGGEPGGGCKLSAWFDADYGTFPGTRRSVSGGAVMMAGGAISLFSRVQKVTAAASSESEYAALAEMVNE 118
            +W A +TRPDI+ +   +A+++  P   HW+A    L Y  RT   GI++      G  L  + +ADY +    RRSVSGG VM AGGAI+ FS+ QK    +++++EY A+A+M  E
Sbjct:  223 LWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGISFQSGTVSGFSLITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKE 340          
BLAST of mRNA_H-elongata_contig111149.912.1 vs. uniprot
Match: A0A6H5L6V8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6V8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.140e-17
Identity = 50/118 (42.37%), Postives = 67/118 (56.78%), Query Frame = 0
Query:    1 MWAATMTRPDISFAAHQLAKFNDTPGPTHWRATQKALQYLWRTRDLGITYGGEPGGGCKLSAWFDADYGTFPGTRRSVSGGAVMMAGGAISLFSRVQKVTAAASSESEYAALAEMVNE 118
            MW AT TRPDI+ A   +A++  +P   HW A    L Y  RT   GI+       G  L  + DAD+ +    RRSVSGG V   GGA+S FSR QK    +++E+EY AL ++VN+
Sbjct: 1119 MWLATQTRPDIANAVRAVARYCSSPKQVHWDAAIGILGYARRTSHFGISLQRRTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVND 1236          
BLAST of mRNA_H-elongata_contig111149.912.1 vs. uniprot
Match: UPI001E1BCD31 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BCD31)

HSP 1 Score: 84.3 bits (207), Expect = 2.190e-17
Identity = 47/118 (39.83%), Postives = 73/118 (61.86%), Query Frame = 0
Query:    1 MWAATMTRPDISFAAHQLAKFNDTPGPTHWRATQKALQYLWRTRDLGITYGGEPGGGCKLSAWFDADYGTFPGTRRSVSGGAVMMAGGAISLFSRVQKVTAAASSESEYAALAEMVNE 118
            ++ +T TRPDIS+A  Q+AKF+  PG  HW+A ++ ++Y+  TR  GI Y  E G    ++ + DADYG     R S SG  ++ + G+IS FSR Q+ T+ +++ESE+   +E   E
Sbjct:   45 LYLSTTTRPDISYAVGQVAKFSQNPGIQHWKAVKRIIRYIAGTRTYGILYSQEKGE--MVTGYTDADYGGDLDDRTSTSGCVLLCSSGSISWFSRKQECTSLSTTESEFVTASEAAKE 160          
BLAST of mRNA_H-elongata_contig111149.912.1 vs. uniprot
Match: A0A6H5JLU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU1_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.990e-17
Identity = 48/118 (40.68%), Postives = 69/118 (58.47%), Query Frame = 0
Query:    1 MWAATMTRPDISFAAHQLAKFNDTPGPTHWRATQKALQYLWRTRDLGITYGGEPGGGCKLSAWFDADYGTFPGTRRSVSGGAVMMAGGAISLFSRVQKVTAAASSESEYAALAEMVNE 118
            +W A +TRP I+ +   +A++   P   HW+A    L Y  R   LGI++      G  L A+ DADY +    RRSVSGG VM AGGAI+ FS+ QK    +++++EY A+A+M  E
Sbjct: 1366 LWTALLTRPGIANSVRAVARYCSAPKLIHWKAALSILGYAVRNSSLGISFQRGTVSGFSLIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKE 1483          
BLAST of mRNA_H-elongata_contig111149.912.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.630e-17
Identity = 52/118 (44.07%), Postives = 68/118 (57.63%), Query Frame = 0
Query:    1 MWAATMTRPDISFAAHQLAKFNDTPGPTHWRATQKALQYLWRTRDLGITYGGEPGGGCKLSAWFDADYGTFPGTRRSVSGGAVMMAGGAISLFSRVQKVTAAASSESEYAALAEMVNE 118
            MW +T +RPD+SFA   +A+    P   HW A QK L YL  TRDLGITY  + G G  L+ + DA Y      RRSVSG A  + G  +S  S+ Q + + +S+E+EY A  E V E
Sbjct:  322 MWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVEE 436          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111149.912.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W2WEK3_PHYPR2.000e-1943.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JWA6_9PHAE3.790e-1942.37Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JWK8_9PHAE3.270e-1842.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JR13_9PHAE5.920e-1842.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKT4_9PHAE8.180e-1840.87Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRZ9_9PHAE1.140e-1739.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6V8_9PHAE1.140e-1742.37Integrase catalytic domain-containing protein n=1 ... [more]
UPI001E1BCD312.190e-1739.83secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
A0A6H5JLU1_9PHAE3.990e-1740.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTL3_9PHAE4.630e-1744.07Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 5..118
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 5..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111149contigH-elongata_contig111149:88..441 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111149.912.1mRNA_H-elongata_contig111149.912.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig111149 88..696 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig111149.912.1 ID=prot_H-elongata_contig111149.912.1|Name=mRNA_H-elongata_contig111149.912.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
MWAATMTRPDISFAAHQLAKFNDTPGPTHWRATQKALQYLWRTRDLGITY
GGEPGGGCKLSAWFDADYGTFPGTRRSVSGGAVMMAGGAISLFSRVQKVT
AAASSESEYAALAEMVNE
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like