mRNA_H-elongata_contig111023.907.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111023.907.1
Unique NamemRNA_H-elongata_contig111023.907.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111023.907.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.640e-33
Identity = 65/89 (73.03%), Postives = 72/89 (80.90%), Query Frame = 3 
Query:    3 CMDLGYYGPFLGAQLDLTTVTNEEYITFSVSYIPEGDATITRMGLATRAFPGTHTASDIQPWIEK--------LTTEFFVDMMGPDVKP 245
            C+ LGY GPFLGAQLDLTTV NEEYITFSVSYI E   TITR+GLATRAFPG+HTA+DI+PWIEK        LTTEFF DMMG +V+P
Sbjct:  258 CVKLGYVGPFLGAQLDLTTVANEEYITFSVSYIAEAATTITRVGLATRAFPGSHTAADIEPWIEKASFTTFKLLTTEFFADMMGENVQP 346
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BLAST of mRNA_H-elongata_contig111023.907.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.600e-29
Identity = 54/81 (66.67%), Postives = 64/81 (79.01%), Query Frame = 3 
Query:    3 CMDLGYYGPFLGAQLDLTTVTNEEYITFSVSYIPEGDATITRMGLATRAFPGTHTASDIQPWIEKLTTEFFVDMMGPDVKP 245
            C+ +GY G FLGAQLDLTTV  EEYITF+VSY+ +G   +TR+ LA RAFPGTHTA DI PWIE+LT E+F D MG DV+P
Sbjct:  276 CLGMGYSGAFLGAQLDLTTVAGEEYITFTVSYVEKGSTDVTRVALACRAFPGTHTADDISPWIEELTREYFADFMGEDVEP 356
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BLAST of mRNA_H-elongata_contig111023.907.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 2.390e-28
Identity = 52/80 (65.00%), Postives = 65/80 (81.25%), Query Frame = 3 
Query:    3 CMDLGYYGPFLGAQLDLTTVTNEEYITFSVSYIPEGDATITRMGLATRAFPGTHTASDIQPWIEKLTTEFFVDMMGPDVK 242
            C+ +GY G FLGAQLDLTTV  EEYITF+VSY+ +GD  ++R+ LATRAFPG+HTA DI+PWIE LT E+F D+MG  V+
Sbjct:   87 CLGMGYGGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWIEALTLEYFTDLMGGSVE 166
[Close]
BLAST of mRNA_H-elongata_contig111023.907.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.560e-27
Identity = 51/80 (63.75%), Postives = 64/80 (80.00%), Query Frame = 3 
Query:    3 CMDLGYYGPFLGAQLDLTTVTNEEYITFSVSYIPEGDATITRMGLATRAFPGTHTASDIQPWIEKLTTEFFVDMMGPDVK 242
            C+ +GY G FLGAQLDLTTV  EEYITF+VSY+ +GD  ++R+ LATRAFPG+HTA DI+PWIE LT E+  D+MG  V+
Sbjct:   87 CLGMGYGGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWIEALTLEYLTDLMGGSVE 166
[Close]
BLAST of mRNA_H-elongata_contig111023.907.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.960e-27
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 3 
Query:    6 MDLGYYGPFLGAQLDLTTVTNEEYITFSVSYIPEGDATITRMGLATRAFPGTHTASDIQPWIEKLTTEFFVDMMGPDVKP 245
            + +GY GPFLGAQLDLTT   EEYITF+V+++ +GD  +TR+ LA RAFPG+HTA DIQPWIEKLT E+F   MG  V+P
Sbjct:   84 LGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKLTLEYFSGFMGESVQP 163
[Close]
BLAST of mRNA_H-elongata_contig111023.907.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 3.170e-27
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 3 
Query:    6 MDLGYYGPFLGAQLDLTTVTNEEYITFSVSYIPEGDATITRMGLATRAFPGTHTASDIQPWIEKLTTEFFVDMMGPDVKP 245
            + +GY GPFLGAQLDLTT   EEYITF+V+++ +GD  +TR+ LA RAFPG+HTA DIQPWIEKLT E+F   MG  V+P
Sbjct:  279 LGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKLTLEYFSGFMGESVQP 358
[Close]
BLAST of mRNA_H-elongata_contig111023.907.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.510e-26
Identity = 52/81 (64.20%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:    6 MDLGYYGPFLGAQLDLTTVTNEEYITFSVSYIPEGDAT-ITRMGLATRAFPGTHTASDIQPWIEKLTTEFFVDMMGPDVKP 245
            + +GY G FLGA LDLTTV NEEYITF+VSY+ +G    +TR+ LATRAFPG+HTA DI+PWIE LT E+F D++GP V+P
Sbjct:   84 LGMGYGGAFLGAHLDLTTVANEEYITFTVSYVKKGKTDDVTRVALATRAFPGSHTAEDIKPWIEALTLEYFKDLIGPSVQP 164
[Close]
BLAST of mRNA_H-elongata_contig111023.907.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 9.170e-23
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 3 
Query:    3 CMDLGYYGPFLGAQLDLTTVTNEEYITFSVSYIPEGDATITRMGLATRAFPGTHTASDIQPWIEKLTTEF 212
            C+ +GY G FLGAQLDLTTV  EEYITF+VSY+ +G   +TR+ LA RAFPGTHTA DI+PWIE+L   F
Sbjct:  392 CLGMGYSGAFLGAQLDLTTVAGEEYITFTVSYVKKGSTDVTRVALACRAFPGTHTADDIRPWIEELRCLF 461
[Close]
BLAST of mRNA_H-elongata_contig111023.907.1 vs. uniprot
Match: A0A6H5KVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP4_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.120e-21
Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 3 
Query:    6 MDLGYYGPFLGAQLDLTTVTNEEYITFSVSYIPEGDATITRMGLATRAFPGTHTASDIQPWIEK 197
            + +GY GPFLGAQLDLTT   EEYITF+V+++ +GD  +TR+ LA RAFPG+HTA DIQPWIEK
Sbjct: 1363 LGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEK 1426
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111023.907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KJ52_9PHAE2.640e-3373.03Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JRT6_9PHAE1.600e-2966.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE2.390e-2865.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU3_9PHAE1.560e-2763.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB8_9PHAE2.960e-2763.75Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE3.170e-2763.75Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JXV5_9PHAE1.510e-2664.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFJ9_9PHAE9.170e-2365.71Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
A0A6H5KVP4_9PHAE1.120e-2167.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111023contigH-elongata_contig111023:998..1420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size245
Cds size240
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111023.907.1prot_H-elongata_contig111023.907.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111023 998..1415 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929635.7254763-CDS-H-elongata_contig111023:997..10451622929635.7254763-CDS-H-elongata_contig111023:997..1045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111023 998..1045 -
1691679100.3170054-CDS-H-elongata_contig111023:997..10451691679100.3170054-CDS-H-elongata_contig111023:997..1045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111023 998..1045 -
1622929635.7376907-CDS-H-elongata_contig111023:1223..14151622929635.7376907-CDS-H-elongata_contig111023:1223..1415Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111023 1224..1415 -
1691679100.324624-CDS-H-elongata_contig111023:1223..14151691679100.324624-CDS-H-elongata_contig111023:1223..1415Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111023 1224..1415 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929635.7499068-UTR-H-elongata_contig111023:1415..14201622929635.7499068-UTR-H-elongata_contig111023:1415..1420Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig111023 1416..1420 -
1691679100.332445-UTR-H-elongata_contig111023:1415..14201691679100.332445-UTR-H-elongata_contig111023:1415..1420Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig111023 1416..1420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111023.907.1

>prot_H-elongata_contig111023.907.1 ID=prot_H-elongata_contig111023.907.1|Name=mRNA_H-elongata_contig111023.907.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MDLGYYGPFLGAQLDLTTVTNEEYITFSVSYIPEGDATITRMGLATRAFP
GTHTASDIQPWIEKLTTEFFVDMMGPDVKP
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mRNA from alignment at H-elongata_contig111023:998..1420-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111023.907.1 ID=mRNA_H-elongata_contig111023.907.1|Name=mRNA_H-elongata_contig111023.907.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=423bp|location=Sequence derived from alignment at H-elongata_contig111023:998..1420- (Himanthalia elongata Himel1 dioecious)
CATGCATGGATCTCGGGTACTACGGCCCTTTCCTTGGTGCCCAGCTGGAC
CTCACCACCGTTACAAACGAGGAGTACATCACATTCTCCGTGTCCTACAT
TCCCGAAGGCGACGCAACGATCACGCGCATGGGCCTGGCGACACGAGCTT
TTCCTGGCACCCACACTGCTTCTGACATACAGCCATGGATCGAGAAGGCG
AGTTGTGCATATTGTTTCGAGTGTGCGTGTTTTTGGAACGTAGACTGGTA
CAGTCTTTGTTTCTCCAAACTGAAGACTTTGTTTATCGAACGACGGTCTA
TGGCGTCTTGTCTAATATAGGGCGTGTCTATTTTTCTTTTTCCTTCTTGT
GTTTAATCGGCCTTTTTACACGCAGCTGACGACGGAGTTTTTCGTGGACA
TGATGGGACCAGACGTCAAGCCG
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Coding sequence (CDS) from alignment at H-elongata_contig111023:998..1420-

>mRNA_H-elongata_contig111023.907.1 ID=mRNA_H-elongata_contig111023.907.1|Name=mRNA_H-elongata_contig111023.907.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig111023:998..1420- (Himanthalia elongata Himel1 dioecious)
ATGGATCTCGGGTACTACGGCCCTTTCCTTGGTGCCCAGCTGGACCTCAC
CACCGTTACAAACGAGGAGTACATCACATTCTCCGTGTCCTACATTCCCG
AAGGCGACGCAACGATCACGCGCATGGGCCTGGCGACACGAGCTTTTCCT
GGCACCCACACTGCTTCTGACATACAGCCATGGATCGAGAAGATGGATCT
CGGGTACTACGGCCCTTTCCTTGGTGCCCAGCTGGACCTCACCACCGTTA
CAAACGAGGAGTACATCACATTCTCCGTGTCCTACATTCCCGAAGGCGAC
GCAACGATCACGCGCATGGGCCTGGCGACACGAGCTTTTCCTGGCACCCA
CACTGCTTCTGACATACAGCCATGGATCGAGAAGCTGACGACGGAGTTTT
TCGTGGACATGATGGGACCAGACGTCAAGCCGCTGACGACGGAGTTTTTC
GTGGACATGATGGGACCAGACGTCAAGCCG
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