mRNA_H-elongata_contig1106.878.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1106.878.1
Unique NamemRNA_H-elongata_contig1106.878.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1106.878.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 2.710e-12
Identity = 54/155 (34.84%), Postives = 71/155 (45.81%), Query Frame = 3 
Query:   36 GDYHASVTDAMLMECLDRRLTSAFKTFLAIRR*FSI------------------STTHRTTTASTRR*RCLKLTARRLGTEHLGKAQPTTPNVGVADFHFEVSQEPGSTFPGARS--AGGVSKEEDAIASRAFLQLHDPTKLVERVEAFMQSKGW 440
            GDYH ++TD M ME L+RRL  AFK     ++   +                  S +    TA  R+ +C K+T  R            T + GV    +        TFP A S    GVS  E A+A+RAF QL  PTKL+E+VE FM  +GW
Sbjct:  366 GDYHDAMTDKMFMEWLERRLAPAFKAKYGNKKMILVLDNASYHHGYDAEVGVPESNSKGYNTALLRKYKCRKITVER----------EVTSSAGVRSKKYTFQVPATGTFPQANSKCGKGVSGPEVALATRAFFQLKHPTKLMEKVETFMNGRGW 510
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BLAST of mRNA_H-elongata_contig1106.878.1 vs. uniprot
Match: A0A6H5KY58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY58_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 7.460e-6
Identity = 45/147 (30.61%), Postives = 70/147 (47.62%), Query Frame = 3 
Query:   30 SKGDYHASVTDAMLMECLDRRLTSAFKTFLAIRR*FSI-----STTHRTTTASTRR*RCLKLTARRLGTEHLGKAQPTTPNV-------GVADFHFEVSQEPGSTFPGARSAGGVSKEEDAIASRAFLQLHDPTKL--VERVEAFMQ 428
            +KGDYHA +TD MLME L+ RL+ A+           I     ++ H    A  +     +   ++   + L K    +  V       GV +++FEV  EPGS+FP     GGVS+ E A A+R ++ +  P  +   + +E F Q
Sbjct:   78 AKGDYHAVMTDLMLMEWLEHRLSPAYNAIPEFEGKQMILVLENASYHHGFDAEVKE---PETNTKKYNVDLLHKFGGKSIRVRRKEGEQGVVEYNFEVPTEPGSSFPARNREGGVSRAEVATATRGWVLIWTPPYMPSFQPIELFWQ 221
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BLAST of mRNA_H-elongata_contig1106.878.1 vs. uniprot
Match: A0A6H5K9W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9W3_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 3.860e-5
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 2 
Query:  101 SFQDVFGDKKMILDLYNASYHDGFDEEVKVPKTNSKTF 214
            +F   F +KKM L L NASYH  FDEEVKVP+TNSK +
Sbjct:   40 AFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKY 77
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BLAST of mRNA_H-elongata_contig1106.878.1 vs. uniprot
Match: A0A6H5JRA8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA8_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 5.950e-5
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 2 
Query:  101 SFQDVFGDKKMILDLYNASYHDGFDEEVKVPKTNSKTF 214
            +F   F +KKM L L NASYH  FDEEVKVP+TNSK +
Sbjct:  116 AFDPQFKNKKMFLVLNNASYHHCFDEEVKVPETNSKKY 153
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1106.878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LQ25_ECTSI2.710e-1234.84Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5KY58_9PHAE7.460e-630.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9W3_9PHAE3.860e-563.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRA8_9PHAE5.950e-563.16Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1106contigH-elongata_contig1106:15528..15968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size441
Cds size141
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1106.878.1prot_H-elongata_contig1106.878.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1106 15658..15798 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929633.1064527-UTR-H-elongata_contig1106:15527..156571622929633.1064527-UTR-H-elongata_contig1106:15527..15657Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1106 15528..15657 +
1691679099.3609629-UTR-H-elongata_contig1106:15527..156571691679099.3609629-UTR-H-elongata_contig1106:15527..15657Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1106 15528..15657 +
1622929633.1353226-UTR-H-elongata_contig1106:15798..159681622929633.1353226-UTR-H-elongata_contig1106:15798..15968Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1106 15799..15968 +
1691679099.3844905-UTR-H-elongata_contig1106:15798..159681691679099.3844905-UTR-H-elongata_contig1106:15798..15968Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1106 15799..15968 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929633.122714-CDS-H-elongata_contig1106:15657..157981622929633.122714-CDS-H-elongata_contig1106:15657..15798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1106 15658..15798 +
1691679099.3754778-CDS-H-elongata_contig1106:15657..157981691679099.3754778-CDS-H-elongata_contig1106:15657..15798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1106 15658..15798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1106.878.1

>prot_H-elongata_contig1106.878.1 ID=prot_H-elongata_contig1106.878.1|Name=mRNA_H-elongata_contig1106.878.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
MILDLYNASYHDGFDEEVKVPKTNSKTFGHRASREGTTNHAQRWSC*
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mRNA from alignment at H-elongata_contig1106:15528..15968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1106.878.1 ID=mRNA_H-elongata_contig1106.878.1|Name=mRNA_H-elongata_contig1106.878.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=441bp|location=Sequence derived from alignment at H-elongata_contig1106:15528..15968+ (Himanthalia elongata Himel1 dioecious)
TCGAGCTTCTCGTCTTTAATGGTGTCGGGTCAAAGGGCGATTACCACGCG
TCAGTGACCGATGCGATGCTAATGGAGTGTCTTGACCGCCGCCTCACATC
AGCTTTCAAGACGTTTTTGGCGATAAGAAGATGATTCTCGATCTCTACAA
CGCATCGTACCACGACGGCTTCGACGAGGAGGTAAAGGTGCCTAAAACTA
ACAGCAAGACGTTTGGGCACAGAGCATCTCGGGAAGGCACAACCAACCAC
GCCCAACGTTGGAGTTGCTGACTTTCACTTTGAAGTCTCACAAGAGCCTG
GGTCTACGTTTCCTGGGGCGAGATCCGCAGGTGGAGTAAGCAAAGAAGAG
GACGCAATCGCTTCTCGGGCGTTCTTGCAGCTTCACGACCCTACCAAACT
CGTTGAGCGGGTAGAGGCGTTCATGCAGAGTAAGGGGTGGG
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Coding sequence (CDS) from alignment at H-elongata_contig1106:15528..15968+

>mRNA_H-elongata_contig1106.878.1 ID=mRNA_H-elongata_contig1106.878.1|Name=mRNA_H-elongata_contig1106.878.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig1106:15528..15968+ (Himanthalia elongata Himel1 dioecious)
ATGATTCTCGATCTCTACAACGCATCGTACCACGACGGCTTCGACGAGGA
GGTAAAGGTGCCTAAAACTAACAGCAAGACGTTTGGGCACAGAGCATCTC
GGGAAGGCACAACCAACCACGCCCAACGTTGGAGTTGCTGAATGATTCTC
GATCTCTACAACGCATCGTACCACGACGGCTTCGACGAGGAGGTAAAGGT
GCCTAAAACTAACAGCAAGACGTTTGGGCACAGAGCATCTCGGGAAGGCA
CAACCAACCACGCCCAACGTTGGAGTTGCTGA
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