prot_H-elongata_contig110521.871.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig110521.871.1
Unique Nameprot_H-elongata_contig110521.871.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length68
Homology
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BLAST of mRNA_H-elongata_contig110521.871.1 vs. uniprot
Match: D7FSH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSH6_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.050e-22
Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = 0 
Query:    1 MVTRSLPRAGGGHDDDHPHLVFDTPTKGPFTRTQAGVVVGGGVFLAIAIVVGAISHQQIKHG 62
            +V+RS+PRAGGGHDD HPHLVF+T  K PFT+  AG++VGGGVF  I IVVGAI+HQ  KHG
Sbjct:    4 IVSRSMPRAGGGHDD-HPHLVFET-AKEPFTKFSAGLIVGGGVFAGIGIVVGAITHQNYKHG 63
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BLAST of mRNA_H-elongata_contig110521.871.1 vs. uniprot
Match: A0A6H5JHE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHE0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.370e-21
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 0 
Query:    1 MVTRSLPRAGGGHDDDHPHLVFDTPTKGPFTRTQAGVVVGGGVFLAIAIVVGAISHQQIKHG 62
            +VTRS+PRAGGGHDD HPHLVFDT  K PFT+  AG++VGG VF  I IVVGA++HQ  KHG
Sbjct:   21 IVTRSMPRAGGGHDD-HPHLVFDT-AKEPFTKFSAGLLVGGLVFSGIGIVVGAVTHQNYKHG 80
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BLAST of mRNA_H-elongata_contig110521.871.1 vs. uniprot
Match: A0A836CJR8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJR8_9STRA)

HSP 1 Score: 46.6 bits (109), Expect = 5.490e-5
Identity = 27/68 (39.71%), Postives = 38/68 (55.88%), Query Frame = 0 
Query:    1 MVTRSLPRAGGGHDDDHP-------HLVFDTPTKGPFTRTQAGVVVGGGVFLAIAIVVGAISHQQIKH 61
            + TR+LPR GGG             HLVF+   KGPFT+ Q  ++VGGG+ + I +V+ A   Q  K+
Sbjct:   25 IATRTLPRNGGGXXXXXXXXXXXXXHLVFE---KGPFTKRQGLILVGGGLTVGIGVVMLAFKLQLAKN 89
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110521.871.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSH6_ECTSI1.050e-2269.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHE0_9PHAE1.370e-2169.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJR8_9STRA5.490e-539.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..34
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 35..56
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 57..67
NoneNo IPR availableTMHMMTMhelixcoord: 33..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110521contigH-elongata_contig110521:1272..2175 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110521.871.1mRNA_H-elongata_contig110521.871.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig110521 1266..2175 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig110521.871.1 ID=prot_H-elongata_contig110521.871.1|Name=mRNA_H-elongata_contig110521.871.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
MVTRSLPRAGGGHDDDHPHLVFDTPTKGPFTRTQAGVVVGGGVFLAIAIV
VGAISHQQIKHGEARRG*
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