mRNA_H-elongata_contig110410.859.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110410.859.1
Unique NamemRNA_H-elongata_contig110410.859.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110410.859.1 vs. uniprot
Match: A0A6H5JS12_9PHAE (EH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS12_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 4.490e-36
Identity = 64/84 (76.19%), Postives = 72/84 (85.71%), Query Frame = 1 
Query:    1 PALFQKKPLQGSGVTGRVARGILRIADWDESGDLGLDEFALAMYLCRRYRLGEGVPSMLEASMIPPRLREARGCQDDGPSPAFP 252
            P L  ++PLQGSGV  R+AR IL+IADW   GDLGLDEF+LAMYLCRR RLGEGVPSMLEA MIPP LREARGC+D+GPSPA+P
Sbjct:  337 PCLVAREPLQGSGVNVRMARAILQIADWQHRGDLGLDEFSLAMYLCRRQRLGEGVPSMLEAWMIPPSLREARGCRDNGPSPAYP 420
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BLAST of mRNA_H-elongata_contig110410.859.1 vs. uniprot
Match: A0A7S2F4E5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F4E5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 5.080e-7
Identity = 25/61 (40.98%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:   16 KKPLQGSGVTGRVARGILRIADWDESGDLGLDEFALAMYLCRRYRLGEGVPSMLEASMIPP 198
            ++ L  +GV   V R I  ++D D+ G L +DEFA+AMYLCR+ + G+ +P  L + ++PP
Sbjct:  161 REALMATGVAQGVLRCIWELSDIDKDGQLDMDEFAVAMYLCRQAQRGQPMPQALPSQVVPP 221
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BLAST of mRNA_H-elongata_contig110410.859.1 vs. uniprot
Match: A0A4C1XRS6_EUMVA (Intersectin-1 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1XRS6_EUMVA)

HSP 1 Score: 51.2 bits (121), Expect = 1.920e-5
Identity = 24/48 (50.00%), Postives = 29/48 (60.42%), Query Frame = 1 
Query:   64 ILRIADWDESGDLGLDEFALAMYLCRRYRLGEGVPSMLEASMIPPRLR 207
            I  +AD D  G LG +EF LAMYLC +   GE VPS L   ++PP  R
Sbjct:  418 IWALADLDNDGKLGCEEFVLAMYLCEKATQGEPVPSKLPPELVPPTFR 465
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110410.859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JS12_9PHAE4.490e-3676.19EH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S2F4E5_9STRA5.080e-740.98Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4C1XRS6_EUMVA1.920e-550.00Intersectin-1 n=1 Tax=Eumeta variegata TaxID=15154... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110410contigH-elongata_contig110410:1391..1965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-18_002950.1
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929630.9780664-CDS-H-elongata_contig110410:1390..15261622929630.9780664-CDS-H-elongata_contig110410:1390..1526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110410 1391..1526 -
1691679098.5215998-CDS-H-elongata_contig110410:1390..15261691679098.5215998-CDS-H-elongata_contig110410:1390..1526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110410 1391..1526 -
1622929630.9978957-CDS-H-elongata_contig110410:1837..19651622929630.9978957-CDS-H-elongata_contig110410:1837..1965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110410 1838..1965 -
1691679098.5298686-CDS-H-elongata_contig110410:1837..19651691679098.5298686-CDS-H-elongata_contig110410:1837..1965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110410 1838..1965 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110410.859.1prot_H-elongata_contig110410.859.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110410 1391..1965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110410.859.1

>prot_H-elongata_contig110410.859.1 ID=prot_H-elongata_contig110410.859.1|Name=mRNA_H-elongata_contig110410.859.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
PALFQKKPLQGSGVTGRVARGILRIADWDESGDLGLDEFALAMYLCRRYR
LGEGVPSMLEASMIPPRLREARGCQDDGPSPAFPPRR*
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mRNA from alignment at H-elongata_contig110410:1391..1965-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110410.859.1 ID=mRNA_H-elongata_contig110410.859.1|Name=mRNA_H-elongata_contig110410.859.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=575bp|location=Sequence derived from alignment at H-elongata_contig110410:1391..1965- (Himanthalia elongata Himel1 dioecious)
CCCGCCTTGTTCCAAAAAAAGCCTCTGCAAGGCTCCGGAGTGACCGGACG
AGTCGCCCGGGGTATACTTCGTATAGCCGATTGGGATGAATCGGGCGACC
TCGGACTTGACGAGTTCGCGCTGGCCATGTGAGTCCCCAGATACGCTCGC
TAGATTCGTAGTGGAAGCTTCTCACGATTCTTGTGTGGCGGAGGGTTAGG
GGGGAGAGGGGAGGAGGCGGTACTCAATTTTTGCAAGCTTCGGCTGTTAA
TAACATTGACCACGCCCCCCTCTCCTCCGGGGGGCGAAAATAAGGGACCC
CATCAGAAAGAGCTGTCGTGTTATCGACGATGTTGCAGGAGGTGCCAAAT
GTGGTTTTGGGGGGCTTTGATGCCCGTCTCGTTGTAGGGTTGTCTCGGTC
GGCCTTGGCGAAAAACATCGCGTCTGTTTCGTCGGCCAGGTACCTCTGCC
GACGCTACCGGCTCGGGGAGGGTGTTCCATCGATGCTGGAGGCGTCGATG
ATTCCCCCGAGGCTGCGAGAGGCGCGAGGCTGCCAAGACGATGGCCCGTC
TCCCGCCTTCCCACCGCGGCGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig110410:1391..1965-

>mRNA_H-elongata_contig110410.859.1 ID=mRNA_H-elongata_contig110410.859.1|Name=mRNA_H-elongata_contig110410.859.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig110410:1391..1965- (Himanthalia elongata Himel1 dioecious)
CCCGCCTTGTTCCAAAAAAAGCCTCTGCAAGGCTCCGGAGTGACCGGACG
AGTCGCCCGGGGTATACTTCGTATAGCCGATTGGGATGAATCGGGCGACC
TCGGACTTGACGAGTTCGCGCTGGCCATCCCGCCTTGTTCCAAAAAAAGC
CTCTGCAAGGCTCCGGAGTGACCGGACGAGTCGCCCGGGGTATACTTCGT
ATAGCCGATTGGGATGAATCGGGCGACCTCGGACTTGACGAGTTCGCGCT
GGCCATGTACCTCTGCCGACGCTACCGGCTCGGGGAGGGTGTTCCATCGA
TGCTGGAGGCGTCGATGATTCCCCCGAGGCTGCGAGAGGCGCGAGGCTGC
CAAGACGATGGCCCGTCTCCCGCCTTCCCACCGCGGCGCTGAGTACCTCT
GCCGACGCTACCGGCTCGGGGAGGGTGTTCCATCGATGCTGGAGGCGTCG
ATGATTCCCCCGAGGCTGCGAGAGGCGCGAGGCTGCCAAGACGATGGCCC
GTCTCCCGCCTTCCCACCGCGGCGCTGA
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