mRNA_H-elongata_contig100053.9.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100053.9.1
Unique NamemRNA_H-elongata_contig100053.9.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig100053.9.1 vs. uniprot
Match: D8LJD7_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD7_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.130e-42
Identity = 80/94 (85.11%), Postives = 87/94 (92.55%), Query Frame = 1 
Query:    1 KLAEGILRRKSFYFQQRTGKLDMRAIGRVDVDRVIKEVDIDTLQVYLENITFADVAEDDLRLYSDQCFLNLFRLGQLLLEYLLSVQDTLAASLE 282
            +L EGILRRKSFYFQQRTGKLDMRAIGRVD+  V+K+VD+DTLQ +LENITFA V+EDDLRLYSDQCFLNLFRL QLLLEYLLSVQDTLA SLE
Sbjct:   33 RLVEGILRRKSFYFQQRTGKLDMRAIGRVDIASVVKDVDVDTLQAHLENITFASVSEDDLRLYSDQCFLNLFRLSQLLLEYLLSVQDTLATSLE 126
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BLAST of mRNA_H-elongata_contig100053.9.1 vs. uniprot
Match: B8BW77_THAPS (Ubiquitin-like domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BW77_THAPS)

HSP 1 Score: 103 bits (257), Expect = 9.260e-24
Identity = 54/93 (58.06%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:    7 AEGILRRKSFYFQQRTG--KLDMRAIGRVDVDRVIKEVDIDTLQVYLENITFADVAEDDLRLYSDQCFLNLFRLGQLLLEYLLSVQDTLAASL 279
            AE +L +K F F  R G  ++D+R I RVD+ R++KEVDIDTLQ +LE IT+AD+ EDD  LYS+ CF+ LF++ QL LEYLL VQDTL+A+L
Sbjct:   26 AETLLYQKGFQFTARYGEDRIDLRDISRVDIHRIVKEVDIDTLQSFLEIITYADITEDDFDLYSNDCFVKLFQVSQLTLEYLLDVQDTLSANL 118
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BLAST of mRNA_H-elongata_contig100053.9.1 vs. uniprot
Match: A0A7R9YCD3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCD3_9STRA)

HSP 1 Score: 100 bits (249), Expect = 9.110e-23
Identity = 47/92 (51.09%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:    7 AEGILRRKSFYFQQRTGKLDMRAIGRVDVDRVIKEVDIDTLQVYLENITFADVAEDDLRLYSDQCFLNLFRLGQLLLEYLLSVQDTLAASLE 282
            AE +L+   FYFQQR+G+LD+R + R+D++RV++EVD+DTLQ++LEN+ ++D++E DL   SD   L + +L QL +EYLL VQDTLA +++
Sbjct:   27 AEPVLKGDGFYFQQRSGRLDLRRLSRIDLERVVREVDVDTLQMHLENLCYSDISEGDLAFASDAQVLQVLKLSQLTVEYLLHVQDTLAENVD 118
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BLAST of mRNA_H-elongata_contig100053.9.1 vs. uniprot
Match: A0A7S2S367_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S367_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.120e-22
Identity = 48/84 (57.14%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:   16 ILRRKSFYFQQRTGKLDMRAIGRVDVDRVIKEVDIDTLQVYLENITFADVAEDDLRLYSDQCFLNLFRLGQLLLEYLLSVQDTL 267
            I+ +KSFYFQQR GK+D+RAI RVD++ ++++VDI+TLQ +LENITF+++ + D++ Y+D  F+ LFRL QL +EYLL+VQ TL
Sbjct:   87 IVPQKSFYFQQRHGKIDLRAISRVDLEALVEQVDIETLQTHLENITFSELDDADMKTYTDDNFMKLFRLTQLTVEYLLNVQHTL 170
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BLAST of mRNA_H-elongata_contig100053.9.1 vs. uniprot
Match: A0A2R5FYZ7_9STRA (Zinc finger protein DZIP1L n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FYZ7_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.940e-22
Identity = 48/88 (54.55%), Postives = 69/88 (78.41%), Query Frame = 1 
Query:   10 EGILRRKSFYFQQRTGKLDMRAIGRVDVDRVIKEVDIDTLQVYLENITFADVAEDDLRLYSDQCFLNLFRLGQLLLEYLLSVQDTLAA 273
            E +   K+FYFQQR GKLD+R I R+D+++V+++VDI+TLQ YLEN+TF+++ + DL   +D+ FL LFR+ QL +EYLL+VQ TL A
Sbjct:   59 ENVRPEKNFYFQQRHGKLDLRGIARLDLEQVVEDVDIETLQTYLENLTFSELEDRDLHTCTDETFLKLFRVTQLTIEYLLNVQHTLYA 146
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BLAST of mRNA_H-elongata_contig100053.9.1 vs. uniprot
Match: A0A485LAG3_9STRA (Aste57867_18047 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAG3_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.080e-20
Identity = 45/82 (54.88%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:   28 KSFYFQQRTGKLDMRAIGRVDVDRVIKEVDIDTLQVYLENITFADVAEDDLRLYSDQCFLNLFRLGQLLLEYLLSVQDTLAA 273
            +SF F+QR GK+D RAI ++D++RV++E DIDT+Q  LEN+ F+DV   D   YSD+ FL LF++ QL +EYLLSVQ++L A
Sbjct:   63 RSFSFRQRRGKIDSRAIAQIDLNRVVRETDIDTIQCQLENLAFSDVTLQDFNQYSDEYFLKLFQVAQLTVEYLLSVQESLVA 144
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BLAST of mRNA_H-elongata_contig100053.9.1 vs. uniprot
Match: K3XA98_GLOUD (C2H2-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XA98_GLOUD)

HSP 1 Score: 92.4 bits (228), Expect = 7.910e-20
Identity = 45/85 (52.94%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:   28 KSFYFQQRTGKLDMRAIGRVDVDRVIKEVDIDTLQVYLENITFADVAEDDLRLYSDQCFLNLFRLGQLLLEYLLSVQDTLAASLE 282
            +SF F+QR GKLD+RAI R+D+++++   DID +Q +LEN+ FADV  +D++ YSD  FL LF++ QL LEYLL+VQD+L    E
Sbjct:  128 RSFSFRQRAGKLDVRAIARLDLEKIVATTDIDAIQRHLENLAFADVTLEDVQRYSDAYFLKLFQIAQLTLEYLLNVQDSLVTHSE 212
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BLAST of mRNA_H-elongata_contig100053.9.1 vs. uniprot
Match: A0A7S3HAZ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HAZ7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.030e-19
Identity = 41/89 (46.07%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:   13 GILRRKSFYFQQRTGKLDMRAIGRVDVDRVIKEVDIDTLQVYLENITFADVAEDDLRLYSDQCFLNLFRLGQLLLEYLLSVQDTLAASL 279
            G+   + F+FQQR G LD+R+I  ++++++++EVD+D LQ+++ENITF ++ E+DLR  +D   + LFR+ QL+LEYLL  QD L  +L
Sbjct:   55 GLFGSEGFFFQQRRGHLDLRSIAAINLEKLVREVDVDVLQIHIENITFCNLREEDLRYLTDPQIVKLFRISQLMLEYLLYSQDKLVDNL 143
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BLAST of mRNA_H-elongata_contig100053.9.1 vs. uniprot
Match: A0A024UCD6_9STRA (C2H2-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UCD6_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.460e-19
Identity = 44/85 (51.76%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:   28 KSFYFQQRTGKLDMRAIGRVDVDRVIKEVDIDTLQVYLENITFADVAEDDLRLYSDQCFLNLFRLGQLLLEYLLSVQDTLAASLE 282
            +SF F+QR GKLD RAI ++D++RV++E DIDT+Q  LEN+ F+D+   D   YSD+ FL LF++ QL +EYLL+VQ++L    E
Sbjct:   82 RSFSFRQRRGKLDTRAIAQIDLNRVVRETDIDTIQNQLENLAFSDITLQDFNQYSDEYFLKLFQIAQLTVEYLLNVQESLVVHAE 166
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BLAST of mRNA_H-elongata_contig100053.9.1 vs. uniprot
Match: W4FDC5_9STRA (C2H2-type domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FDC5_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.000e-19
Identity = 44/85 (51.76%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:   28 KSFYFQQRTGKLDMRAIGRVDVDRVIKEVDIDTLQVYLENITFADVAEDDLRLYSDQCFLNLFRLGQLLLEYLLSVQDTLAASLE 282
            +SF F+QR GKLD RAI ++D++RV++E DIDT+Q  LEN+ F+D+   D   YSD+ FL LF++ QL +EYLL+VQ++L    E
Sbjct:   78 RSFSFRQRRGKLDTRAIAQIDLNRVVRETDIDTIQNQLENLAFSDITLQDFNQYSDEYFLKLFQIAQLTVEYLLNVQESLVMHTE 162
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100053.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJD7_ECTSI1.130e-4285.11C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
B8BW77_THAPS9.260e-2458.06Ubiquitin-like domain-containing protein n=1 Tax=T... [more]
A0A7R9YCD3_9STRA9.110e-2351.09Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2S367_9STRA2.120e-2257.14Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A2R5FYZ7_9STRA3.940e-2254.55Zinc finger protein DZIP1L n=1 Tax=Hondaea ferment... [more]
A0A485LAG3_9STRA3.080e-2054.88Aste57867_18047 protein n=1 Tax=Aphanomyces stella... [more]
K3XA98_GLOUD7.910e-2052.94C2H2-type domain-containing protein n=1 Tax=Globis... [more]
A0A7S3HAZ7_9STRA1.030e-1946.07Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A024UCD6_9STRA1.460e-1951.76C2H2-type domain-containing protein n=1 Tax=Aphano... [more]
W4FDC5_9STRA2.000e-1951.76C2H2-type domain-containing protein n=3 Tax=Aphano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100053contigH-elongata_contig100053:1506..2150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.7
Seed ortholog evalue1.3e-36
Seed eggNOG ortholog2880.D8LJD7
Preferred nameDZIP1
KEGG koko:K16470
GOsGO:0000003,GO:0000226,GO:0000902,GO:0000904,GO:0001568,GO:0001578,GO:0001944,GO:0001947,GO:0002009,GO:0003006,GO:0003007,GO:0003143,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006355,GO:0006357,GO:0006606,GO:0006607,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006935,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007276,GO:0007281,GO:0007368,GO:0007389,GO:0007399,GO:0007409,GO:0007411,GO:0007417,GO:0007420,GO:0007507,GO:0008104,GO:0008150,GO:0008589,GO:0009605,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009889,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010638,GO:0010646,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019222,GO:0019953,GO:0021536,GO:0021983,GO:0021984,GO:0022008,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030510,GO:0030900,GO:0031175,GO:0031290,GO:0031323,GO:0031326,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034451,GO:0034504,GO:0034613,GO:0035050,GO:0035082,GO:0035239,GO:0035270,GO:0035295,GO:0036064,GO:0040011,GO:0042221,GO:0042330,GO:0042886,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045184,GO:0045185,GO:0045724,GO:0045995,GO:0046907,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048568,GO:0048583,GO:0048598,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048729,GO:0048731,GO:0048732,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051098,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051220,GO:0051234,GO:0051235,GO:0051239,GO:0051252,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0060255,GO:0060271,GO:0060322,GO:0060429,GO:0060491,GO:0060562,GO:0061371,GO:0061512,GO:0061564,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0072358,GO:0072359,GO:0072594,GO:0080090,GO:0090092,GO:0090287,GO:0097485,GO:0097539,GO:0097730,GO:0120025,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:1902017,GO:1902115,GO:1902117,GO:1903506,GO:1905330,GO:2000026,GO:2000027,GO:2000112,GO:2000223,GO:2000826,GO:2001141
EggNOG free text desc.Zinc finger protein
EggNOG OGs28IYV@1,2QRAI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929543.3579075-CDS-H-elongata_contig100053:1505..16551622929543.3579075-CDS-H-elongata_contig100053:1505..1655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100053 1506..1655 -
1691679061.9459863-CDS-H-elongata_contig100053:1505..16551691679061.9459863-CDS-H-elongata_contig100053:1505..1655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100053 1506..1655 -
1622929543.3777604-CDS-H-elongata_contig100053:2018..21501622929543.3777604-CDS-H-elongata_contig100053:2018..2150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100053 2019..2150 -
1691679061.9682086-CDS-H-elongata_contig100053:2018..21501691679061.9682086-CDS-H-elongata_contig100053:2018..2150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100053 2019..2150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100053.9.1prot_H-elongata_contig100053.9.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100053 1506..2150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100053.9.1

>prot_H-elongata_contig100053.9.1 ID=prot_H-elongata_contig100053.9.1|Name=mRNA_H-elongata_contig100053.9.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
KLAEGILRRKSFYFQQRTGKLDMRAIGRVDVDRVIKEVDIDTLQVYLENI
TFADVAEDDLRLYSDQCFLNLFRLGQLLLEYLLSVQDTLAASLE
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mRNA from alignment at H-elongata_contig100053:1506..2150-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100053.9.1 ID=mRNA_H-elongata_contig100053.9.1|Name=mRNA_H-elongata_contig100053.9.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=645bp|location=Sequence derived from alignment at H-elongata_contig100053:1506..2150- (Himanthalia elongata Himel1 dioecious)
AAACTGGCAGAAGGCATCCTGAGACGCAAGTCGTTCTACTTTCAACAAAG
AACCGGGAAGCTGGACATGAGGGCAATCGGGCGCGTTGATGTGGACAGAG
TGATCAAGGAAGTTGACATCGATACCCTGCAGGTGCCGGTTGCTGGGATA
CTTTCGAACGTCGAGATAAGACTCGCTAGCGCTGCTGCATGAAACAGCAG
TGTAAGCAGGAATGTGCCTTGCTCTGCTGAAACCACACTCTATTATAGAA
AGTACCGTAACAATATTTAATGTGGTTGTGTTACCTCCGCTTGTGCTCGT
CCGCGAACCCCACGCTACTACTAATATTATTTTCCCTATGACGTCACCTT
TTTGCCACATTCTCGAGCGATTGTCAGGCCGATAGATCTTTTCACGATGT
TCCGCTTTCGGCAGCGTTAAAAAAACGACATATCTCCTCCCCGCCCACAA
ATAAATATGGCTGCTCGTGTTCTTGTCTGGGCTTCGACCCACAAGGTTTA
CCTGGAGAACATTACCTTCGCCGACGTCGCTGAAGACGATCTGAGACTCT
ATTCCGACCAGTGCTTCCTCAACCTTTTTCGCCTCGGTCAATTGCTTCTT
GAATATTTGCTCAGTGTCCAAGACACGCTCGCCGCCAGCCTTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig100053:1506..2150-

>mRNA_H-elongata_contig100053.9.1 ID=mRNA_H-elongata_contig100053.9.1|Name=mRNA_H-elongata_contig100053.9.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig100053:1506..2150- (Himanthalia elongata Himel1 dioecious)
AAACTGGCAGAAGGCATCCTGAGACGCAAGTCGTTCTACTTTCAACAAAG
AACCGGGAAGCTGGACATGAGGGCAATCGGGCGCGTTGATGTGGACAGAG
TGATCAAGGAAGTTGACATCGATACCCTGCAGAAACTGGCAGAAGGCATC
CTGAGACGCAAGTCGTTCTACTTTCAACAAAGAACCGGGAAGCTGGACAT
GAGGGCAATCGGGCGCGTTGATGTGGACAGAGTGATCAAGGAAGTTGACA
TCGATACCCTGCAGGTTTACCTGGAGAACATTACCTTCGCCGACGTCGCT
GAAGACGATCTGAGACTCTATTCCGACCAGTGCTTCCTCAACCTTTTTCG
CCTCGGTCAATTGCTTCTTGAATATTTGCTCAGTGTCCAAGACACGCTCG
CCGCCAGCCTTGAGGTTTACCTGGAGAACATTACCTTCGCCGACGTCGCT
GAAGACGATCTGAGACTCTATTCCGACCAGTGCTTCCTCAACCTTTTTCG
CCTCGGTCAATTGCTTCTTGAATATTTGCTCAGTGTCCAAGACACGCTCG
CCGCCAGCCTTGAG
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