mRNA_H-elongata_contig11027.842.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11027.842.1
Unique NamemRNA_H-elongata_contig11027.842.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11027.842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11027contigH-elongata_contig11027:6783..8324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1542
Cds size1512
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929629.2180452-CDS-H-elongata_contig11027:6782..82941622929629.2180452-CDS-H-elongata_contig11027:6782..8294Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11027 6783..8294 -
1691679097.768164-CDS-H-elongata_contig11027:6782..82941691679097.768164-CDS-H-elongata_contig11027:6782..8294Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11027 6783..8294 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929629.2346685-UTR-H-elongata_contig11027:8294..83241622929629.2346685-UTR-H-elongata_contig11027:8294..8324Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11027 8295..8324 -
1691679097.7766707-UTR-H-elongata_contig11027:8294..83241691679097.7766707-UTR-H-elongata_contig11027:8294..8324Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11027 8295..8324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11027.842.1prot_H-elongata_contig11027.842.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11027 6783..8294 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11027.842.1

>prot_H-elongata_contig11027.842.1 ID=prot_H-elongata_contig11027.842.1|Name=mRNA_H-elongata_contig11027.842.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=504bp
MVNVSKRVCADCGCYKIPSYGKAGSTKRQYCAEHALEGMVNISKKICAGG
KCCKGSSYGMPGSTKPDYCAEHALEGMINVLYKTCAGNGCFKTATDGVPG
SGKRAFCSEHALEGMVNVLKKVCAGDGCYKRATNGVADNRKRIYCSEHAL
ENMVHFSSQMCAGGGCSKLPSYGKAGSTKREYCAEHVLKGMVNVSKKVCA
GDGCSKRSSYGKAGSTKHEYCAEHALEGMVDLVSKMCVRDGCNKIATNGV
AGSTRREYCSKHALEGMVNVSKKKCVGDGCSKIPSYGKSGSKKPKYCAEH
SLEGMINVVSKICIVNGCHKRATIGVAGSRKRIYCSEHALKDTGMVIFSS
QICARDGCSRRSSYGKAGSRKRIYCSEHALEGMVNVSNSMCFGDGCSKQA
SYGKAGSTKREYCAEHALEGMINLKKRRCASDGCFKNSIYGKTGTTKPEY
CAEHALEGMVNVVSKICAGDGCYKTAANDVSGSRRQKYCSRHALEGMANV
SKKR
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mRNA from alignment at H-elongata_contig11027:6783..8324-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11027.842.1 ID=mRNA_H-elongata_contig11027.842.1|Name=mRNA_H-elongata_contig11027.842.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1542bp|location=Sequence derived from alignment at H-elongata_contig11027:6783..8324- (Himanthalia elongata Himel1 dioecious)
GAATTCTGCTCCGAGCATGCCCTAAAAGGGATGGTCAACGTTTCGAAGAG
AGTATGCGCCGATTGTGGGTGCTATAAGATACCAAGCTACGGCAAGGCTG
GCAGCACGAAACGGCAGTACTGCGCCGAGCATGCCTTAGAAGGGATGGTC
AATATTTCGAAGAAAATATGTGCTGGTGGTAAATGTTGTAAGGGCTCGAG
CTACGGGATGCCCGGAAGCACGAAACCCGATTACTGCGCCGAGCATGCAT
TGGAAGGAATGATCAACGTTCTCTACAAGACCTGCGCGGGTAATGGATGT
TTTAAAACAGCGACAGATGGCGTGCCCGGCAGCGGAAAACGGGCGTTCTG
CTCCGAACATGCCCTAGAGGGAATGGTCAACGTTTTGAAGAAGGTATGTG
CCGGTGATGGGTGCTATAAAAGAGCGACCAACGGTGTCGCCGACAACAGA
AAGAGAATTTACTGCTCCGAGCATGCCTTAGAAAACATGGTCCATTTTTC
AAGTCAAATGTGTGCCGGCGGCGGATGCTCAAAGTTACCAAGCTACGGAA
AAGCTGGCAGCACAAAACGGGAGTACTGCGCTGAGCATGTCTTAAAAGGG
ATGGTCAATGTTTCGAAGAAAGTATGTGCTGGTGATGGATGTTCTAAGAG
ATCGAGCTACGGGAAGGCCGGAAGCACAAAACACGAGTACTGCGCCGAGC
ATGCATTGGAGGGGATGGTCGACCTTGTTTCCAAGATGTGTGTTCGTGAT
GGGTGTAATAAAATAGCGACCAACGGCGTAGCTGGCAGCACACGGCGCGA
ATACTGCTCGAAGCATGCTTTGGAGGGGATGGTCAATGTTTCCAAAAAGA
AGTGTGTCGGTGATGGGTGCTCCAAAATACCTAGCTATGGGAAGTCCGGA
AGCAAGAAACCCAAGTACTGCGCCGAGCATTCTTTGGAAGGGATGATCAA
CGTTGTTTCGAAAATATGTATCGTTAATGGGTGCCATAAAAGAGCTACCA
TAGGCGTCGCCGGCAGCAGAAAGCGTATTTACTGCTCCGAGCATGCGTTG
AAAGATACCGGTATGGTAATTTTTTCAAGCCAAATTTGTGCCCGCGATGG
ATGCTCTAGGCGATCAAGCTACGGGAAGGCTGGCAGCAGAAAGCGTATTT
ACTGCTCCGAGCATGCATTGGAGGGGATGGTCAATGTTTCAAACAGTATG
TGTTTCGGTGATGGATGTTCTAAGCAAGCGAGCTATGGAAAGGCCGGAAG
CACGAAACGAGAGTACTGCGCTGAGCATGCCTTGGAGGGGATGATTAACC
TTAAGAAAAGAAGGTGTGCTAGTGATGGATGTTTTAAGAATTCGATCTAC
GGGAAGACCGGCACCACGAAACCCGAATACTGCGCGGAGCATGCATTGGA
AGGGATGGTCAACGTTGTTTCCAAGATATGTGCCGGTGATGGGTGTTATA
AAACAGCGGCCAACGACGTGTCCGGCAGCAGAAGGCAAAAGTATTGCTCC
CGGCATGCCTTGGAGGGGATGGCCAATGTCTCGAAGAAAAGA
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Coding sequence (CDS) from alignment at H-elongata_contig11027:6783..8324-

>mRNA_H-elongata_contig11027.842.1 ID=mRNA_H-elongata_contig11027.842.1|Name=mRNA_H-elongata_contig11027.842.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3024bp|location=Sequence derived from alignment at H-elongata_contig11027:6783..8324- (Himanthalia elongata Himel1 dioecious)
ATGGTCAACGTTTCGAAGAGAGTATGCGCCGATTGTGGGTGCTATAAGAT
ACCAAGCTACGGCAAGGCTGGCAGCACGAAACGGCAGTACTGCGCCGAGC
ATGCCTTAGAAGGGATGGTCAATATTTCGAAGAAAATATGTGCTGGTGGT
AAATGTTGTAAGGGCTCGAGCTACGGGATGCCCGGAAGCACGAAACCCGA
TTACTGCGCCGAGCATGCATTGGAAGGAATGATCAACGTTCTCTACAAGA
CCTGCGCGGGTAATGGATGTTTTAAAACAGCGACAGATGGCGTGCCCGGC
AGCGGAAAACGGGCGTTCTGCTCCGAACATGCCCTAGAGGGAATGGTCAA
CGTTTTGAAGAAGGTATGTGCCGGTGATGGGTGCTATAAAAGAGCGACCA
ACGGTGTCGCCGACAACAGAAAGAGAATTTACTGCTCCGAGCATGCCTTA
GAAAACATGGTCCATTTTTCAAGTCAAATGTGTGCCGGCGGCGGATGCTC
AAAGTTACCAAGCTACGGAAAAGCTGGCAGCACAAAACGGGAGTACTGCG
CTGAGCATGTCTTAAAAGGGATGGTCAATGTTTCGAAGAAAGTATGTGCT
GGTGATGGATGTTCTAAGAGATCGAGCTACGGGAAGGCCGGAAGCACAAA
ACACGAGTACTGCGCCGAGCATGCATTGGAGGGGATGGTCGACCTTGTTT
CCAAGATGTGTGTTCGTGATGGGTGTAATAAAATAGCGACCAACGGCGTA
GCTGGCAGCACACGGCGCGAATACTGCTCGAAGCATGCTTTGGAGGGGAT
GGTCAATGTTTCCAAAAAGAAGTGTGTCGGTGATGGGTGCTCCAAAATAC
CTAGCTATGGGAAGTCCGGAAGCAAGAAACCCAAGTACTGCGCCGAGCAT
TCTTTGGAAGGGATGATCAACGTTGTTTCGAAAATATGTATCGTTAATGG
GTGCCATAAAAGAGCTACCATAGGCGTCGCCGGCAGCAGAAAGCGTATTT
ACTGCTCCGAGCATGCGTTGAAAGATACCGGTATGGTAATTTTTTCAAGC
CAAATTTGTGCCCGCGATGGATGCTCTAGGCGATCAAGCTACGGGAAGGC
TGGCAGCAGAAAGCGTATTTACTGCTCCGAGCATGCATTGGAGGGGATGG
TCAATGTTTCAAACAGTATGTGTTTCGGTGATGGATGTTCTAAGCAAGCG
AGCTATGGAAAGGCCGGAAGCACGAAACGAGAGTACTGCGCTGAGCATGC
CTTGGAGGGGATGATTAACCTTAAGAAAAGAAGGTGTGCTAGTGATGGAT
GTTTTAAGAATTCGATCTACGGGAAGACCGGCACCACGAAACCCGAATAC
TGCGCGGAGCATGCATTGGAAGGGATGGTCAACGTTGTTTCCAAGATATG
TGCCGGTGATGGGTGTTATAAAACAGCGGCCAACGACGTGTCCGGCAGCA
GAAGGCAAAAGTATTGCTCCCGGCATGCCTTGGAGGGGATGGCCAATGTC
TCGAAGAAAAGAATGGTCAACGTTTCGAAGAGAGTATGCGCCGATTGTGG
GTGCTATAAGATACCAAGCTACGGCAAGGCTGGCAGCACGAAACGGCAGT
ACTGCGCCGAGCATGCCTTAGAAGGGATGGTCAATATTTCGAAGAAAATA
TGTGCTGGTGGTAAATGTTGTAAGGGCTCGAGCTACGGGATGCCCGGAAG
CACGAAACCCGATTACTGCGCCGAGCATGCATTGGAAGGAATGATCAACG
TTCTCTACAAGACCTGCGCGGGTAATGGATGTTTTAAAACAGCGACAGAT
GGCGTGCCCGGCAGCGGAAAACGGGCGTTCTGCTCCGAACATGCCCTAGA
GGGAATGGTCAACGTTTTGAAGAAGGTATGTGCCGGTGATGGGTGCTATA
AAAGAGCGACCAACGGTGTCGCCGACAACAGAAAGAGAATTTACTGCTCC
GAGCATGCCTTAGAAAACATGGTCCATTTTTCAAGTCAAATGTGTGCCGG
CGGCGGATGCTCAAAGTTACCAAGCTACGGAAAAGCTGGCAGCACAAAAC
GGGAGTACTGCGCTGAGCATGTCTTAAAAGGGATGGTCAATGTTTCGAAG
AAAGTATGTGCTGGTGATGGATGTTCTAAGAGATCGAGCTACGGGAAGGC
CGGAAGCACAAAACACGAGTACTGCGCCGAGCATGCATTGGAGGGGATGG
TCGACCTTGTTTCCAAGATGTGTGTTCGTGATGGGTGTAATAAAATAGCG
ACCAACGGCGTAGCTGGCAGCACACGGCGCGAATACTGCTCGAAGCATGC
TTTGGAGGGGATGGTCAATGTTTCCAAAAAGAAGTGTGTCGGTGATGGGT
GCTCCAAAATACCTAGCTATGGGAAGTCCGGAAGCAAGAAACCCAAGTAC
TGCGCCGAGCATTCTTTGGAAGGGATGATCAACGTTGTTTCGAAAATATG
TATCGTTAATGGGTGCCATAAAAGAGCTACCATAGGCGTCGCCGGCAGCA
GAAAGCGTATTTACTGCTCCGAGCATGCGTTGAAAGATACCGGTATGGTA
ATTTTTTCAAGCCAAATTTGTGCCCGCGATGGATGCTCTAGGCGATCAAG
CTACGGGAAGGCTGGCAGCAGAAAGCGTATTTACTGCTCCGAGCATGCAT
TGGAGGGGATGGTCAATGTTTCAAACAGTATGTGTTTCGGTGATGGATGT
TCTAAGCAAGCGAGCTATGGAAAGGCCGGAAGCACGAAACGAGAGTACTG
CGCTGAGCATGCCTTGGAGGGGATGATTAACCTTAAGAAAAGAAGGTGTG
CTAGTGATGGATGTTTTAAGAATTCGATCTACGGGAAGACCGGCACCACG
AAACCCGAATACTGCGCGGAGCATGCATTGGAAGGGATGGTCAACGTTGT
TTCCAAGATATGTGCCGGTGATGGGTGTTATAAAACAGCGGCCAACGACG
TGTCCGGCAGCAGAAGGCAAAAGTATTGCTCCCGGCATGCCTTGGAGGGG
ATGGCCAATGTCTCGAAGAAAAGA
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