mRNA_H-elongata_contig11023.837.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11023.837.1 vs. uniprot
Match: D8LP18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP18_ECTSI) HSP 1 Score: 244 bits (624), Expect = 1.190e-64 Identity = 265/726 (36.50%), Postives = 352/726 (48.48%), Query Frame = 1
Query: 13 EREKDEELRGVAREVLLELEDTLSRGLALVAAEQREHSGIRPQADSAIELLHELSEACSREGGSKALRGDQ---LVSDARKAVETAATRARILQRFLGVSARLVELRTKADEALRNGDPNTTGVXXXXXXXXXXXHDDIDKSMGNANASKPSLLSYGDEGAGASAGCSESGNCPDETYGSHGRCVLVSQLSLVDDLLGRELEKVSEDNMVVLVESAEEALDAGGRMLDTLRLVSSTSRRLADARAAMAAGDPLLKSSEGVIRLVAAAVISMGKAQREGITKDASAA------DPSRLLEAGARWERAAKAADSDVAAAEEEVERLAGEXXXXXXXXXXXXXXXXXXXERRLREEHNQRTERATRALGKEIDERRQMEARIFAMELRRKEMAAQVRNKRARERLYSWFKTRRPSI------KDSRA---------IPDRWKMKEGPEVKLSDAG------LVGNTAASAGAPAVPAT------------HNEGTAAGALPTLT----------------------DRWNLDDGISDLAQRGLKIVGAGFYTTTAATAAXXEAAAATNGNESVGRR--KRSRHIWTHEEEVE-WLDVVAKRIRSTIVGEVPAGNWAMEVDDDGD-DAMAL------GGTEGMDEAEGNASEGDERACFSIRDVASRRHAGAAPVTFKVEEERPDTDTPSLDVENSSRGEEATEGASGAGKTEAELRKRLLAAM-GRSK 1965
EREKD LR AR L++L ++LS+GLALVAAE R+H GI+PQAD A LL E+SEACS+EGGS+A G LV+DAR+A ETA TRA +LQR+LG ARL L KA A P G XXXXXXXXXX +K GN +L +Q+ +V+ +L R+LE +SE +++++ ESAEEAL +L++L+LV++ RLAD RAA+A GDPLL+SSEG++RL+AAAV+S +AQREG+ K +AA + E RW RAA +ADSDVAAA EVER++GE XXX I AMELRR EMA QVRNK AR+RL F+ ++ + KDS A + DRW ++EG V+++D G L +A APA +N+ A + DRW ++DG +DLA+RG+++ G G + G GRR KR+R +EE E WL++V+KR+RST+VG P G W ++DG+ DA+A+ G + SEG A+R +GA T V +V G G EAELR+RLLAAM GRSK
Sbjct: 503 EREKDRGLRDAARATLVQLRESLSQGLALVAAE-RQHRGIKPQADRAAALLDEVSEACSKEGGSEAFGGTAEGGLVADARRATETAITRACMLQRYLGTCARLKTL--KATVATTVDHPPADGGSXXXXXXXXXXXXXNNK-----------------------------GN------------LLAAQVEVVETVLSRDLEGLSEGDLLLMWESAEEALGVADGLLESLKLVNAARHRLADTRAAVANGDPLLRSSEGIMRLIAAAVMSTARAQREGVVKHPTAAATAGRHSVTSPAETADRWRRAAISADSDVAAAMREVERVSGELRDKHRREEEEKSWRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILAMELRRNEMAEQVRNKAARKRLQEQFRAQQAARDAAGRKKDSGASKKHAESPSMADRWTLEEG-LVQVADGGNHNSGTLTLTHGIAAAAPAXXXXXXXXXXXKSQGGNNKSERDSAKVSQAEASXXXXXXXXXXAVVPRDPADDRWGMNDGAADLAERGVELEGGGAGLYLPPPLDWPPDVSLLPGGAKGGRRGRKRNRQARAEKEEAEQWLEMVSKRVRSTVVGAAPPGTWGAANEEDGNGDAVAMDVVVDGGSLNAVGAVRVGGSEGG----------ANRAPSGAGSATGAV-----------ANV--------------GGGDVEAELRQRLLAAMIGRSK 1148
BLAST of mRNA_H-elongata_contig11023.837.1 vs. uniprot
Match: A0A6H5JML1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML1_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 1.140e-9 Identity = 63/189 (33.33%), Postives = 85/189 (44.97%), Query Frame = 1
Query: 1393 DRWNLDDGISDLAQRGLKIVGAGFYTTTAATAAXXEAAAATNGNESVGRRK--RSRHIWTHEEEVEWLDVVAKRIRSTIVGEVPAGNWAMEVDDDGDDAMALGGTEGMDEAEGNASEGDERACFSIRDVASRRHAGAAPVTFKVEEERPDTDTPSLDVENSSRGEEATEGASGAGKTEAELRKRLLAAM 1953
DRW ++DG +DLA+RG+++ G G A+ GRR R R +EEVEWL++V+KR+RS +VG P G+W +DDG+ G MD G G A ++R S A AP + G G+ G G EAELR+RLLAAM
Sbjct: 136 DRWGMNDGAADLAERGVELEGGGAGLYLPPPPDWPPDASLLPDGAKGGRRXXXRDRQASAEKEEVEWLEMVSKRVRSKVVGAAPPGSWGAANEDDGN-----GNAVPMDVVVGG---GSLNADGAVRVGGSEGGANRAP---------------------NGAGSATGAGSVGGGDVEAELRQRLLAAM 295 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11023.837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11023.837.1 >prot_H-elongata_contig11023.837.1 ID=prot_H-elongata_contig11023.837.1|Name=mRNA_H-elongata_contig11023.837.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=521bp MGNANASKPSLLSYGDEGAGASAGCSESGNCPDETYGSHGRCVLVSQLSLback to top mRNA from alignment at H-elongata_contig11023:1610..8286- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11023.837.1 ID=mRNA_H-elongata_contig11023.837.1|Name=mRNA_H-elongata_contig11023.837.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6677bp|location=Sequence derived from alignment at H-elongata_contig11023:1610..8286- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11023:1610..8286- >mRNA_H-elongata_contig11023.837.1 ID=mRNA_H-elongata_contig11023.837.1|Name=mRNA_H-elongata_contig11023.837.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3126bp|location=Sequence derived from alignment at H-elongata_contig11023:1610..8286- (Himanthalia elongata Himel1 dioecious)back to top |