mRNA_H-elongata_contig109406.764.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109406.764.1
Unique NamemRNA_H-elongata_contig109406.764.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig109406.764.1 vs. uniprot
Match: A0A6H5L4D8_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4D8_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 2.170e-36
Identity = 66/106 (62.26%), Postives = 82/106 (77.36%), Query Frame = 1 
Query:   22 AHIGILTVTVARAQHLRSVSTLSTQDPYVRAKLLVDGYHTAEGRTAVHNNGGRNPDWTGRGNVITFRLPPSVPFSRLAVVLEIHDENIVQ-DNMIGTCGQIPLERV 336
            A +G LTV VA AQ+L+SVST+STQDPYV+AKLLVDGY  +E ++  HNNGGRNP W GR N  TF +P +VP  +LAVVLEI+D N +  D MIGTCG+IPL+ +
Sbjct:  136 AQVGGLTVNVACAQNLKSVSTMSTQDPYVKAKLLVDGYQVSEVKSGTHNNGGRNPSWAGRNNFFTFYVPSNVPLRKLAVVLEIYDYNTMSADKMIGTCGKIPLQGI 241
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BLAST of mRNA_H-elongata_contig109406.764.1 vs. uniprot
Match: D7G451_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G451_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 8.880e-36
Identity = 65/106 (61.32%), Postives = 81/106 (76.42%), Query Frame = 1 
Query:   22 AHIGILTVTVARAQHLRSVSTLSTQDPYVRAKLLVDGYHTAEGRTAVHNNGGRNPDWTGRGNVITFRLPPSVPFSRLAVVLEIHDENIVQ-DNMIGTCGQIPLERV 336
            A +G LTV VA AQ+L+SVST+STQDPYV+AKLLVDGY  +E ++  HNNGGRNP W  R N  TF +P +VP  +LAVVLEI+D N +  D MIGTCG+IPL+ +
Sbjct:  159 AQVGGLTVNVACAQNLKSVSTMSTQDPYVKAKLLVDGYQISEVKSGTHNNGGRNPSWARRNNFFTFYVPSNVPLRKLAVVLEIYDYNTMSADKMIGTCGKIPLQGI 264
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BLAST of mRNA_H-elongata_contig109406.764.1 vs. uniprot
Match: A0A6H5JZ55_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ55_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.760e-21
Identity = 47/104 (45.19%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:   22 AHIGILTVTVARAQHLRSVSTLSTQDPYVRAKLLVDGYHTAEGRTAVHNNGGRNPDWTGRG-NVITFRLPPSVPFSRLAVVLEIHDENIVQDNMIGTCGQIPLE 330
            A + ++TV V +AQ+L+ V  +  QDPYVRAKLL +G+   E R++ H +GGRNP W     +V TF +P +V    LAVVL++ ++N+V D++IGT G I L+
Sbjct:  183 APVNMVTVRVCQAQNLKKVQMIGKQDPYVRAKLLFNGHKIGECRSSTHTDGGRNPTWQNMAKSVFTFYVPATVTLDTLAVVLDVVNDNLVADSIIGTTGSIGLQ 286
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BLAST of mRNA_H-elongata_contig109406.764.1 vs. uniprot
Match: D8LMN7_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN7_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 3.030e-21
Identity = 47/104 (45.19%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:   22 AHIGILTVTVARAQHLRSVSTLSTQDPYVRAKLLVDGYHTAEGRTAVHNNGGRNPDWTGRG-NVITFRLPPSVPFSRLAVVLEIHDENIVQDNMIGTCGQIPLE 330
            A + ++TV V +AQ+L+ V  +  QDPYVRAKLL +G+   E R++ H +GGRNP W     +V TF +P +V    LAVVL++ ++N+V D++IGT G I L+
Sbjct:  165 APVNMVTVRVCQAQNLKKVQMIGKQDPYVRAKLLFNGHKIGECRSSTHTDGGRNPTWQNMARSVFTFYVPATVTLETLAVVLDVVNDNLVADSIIGTTGSIGLK 268
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BLAST of mRNA_H-elongata_contig109406.764.1 vs. uniprot
Match: A8JA57_CHLRE (Predicted protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8JA57_CHLRE)

HSP 1 Score: 50.4 bits (119), Expect = 5.680e-5
Identity = 36/96 (37.50%), Postives = 51/96 (53.12%), Query Frame = 1 
Query:   31 GILTVTVARAQHLRSVSTLSTQDPYVRAKLLVDGYHTAEGRTAVHNNGGRNPDW--TGRGNVITFRLPPSVPFSRLAVVLEIHDENIVQDNMIGTC 312
            G+++VT+  A+ L+       QDPY   ++   G  T   RTAV  +GGRNP W  T R NVI              V +EI DE++ +D++IGTC
Sbjct:    6 GVMSVTLEFAKDLKDADWFGKQDPYCIIRI---GGQTFRTRTAV--DGGRNPVWNDTFRFNVINENN----------VEVEIKDEDVGKDDLIGTC 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109406.764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L4D8_9PHAE2.170e-3662.26C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7G451_ECTSI8.880e-3661.32C2 domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JZ55_9PHAE2.760e-2145.19C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LMN7_ECTSI3.030e-2145.19C2 domain-containing protein n=1 Tax=Ectocarpus si... [more]
A8JA57_CHLRE5.680e-537.50Predicted protein n=2 Tax=Chlamydomonas reinhardti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109406contigH-elongata_contig109406:440..1099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-02_002190.1
Exons2
Model size345
Cds size345
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929621.6777813-CDS-H-elongata_contig109406:439..6461622929621.6777813-CDS-H-elongata_contig109406:439..646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109406 440..646 -
1691679094.8075092-CDS-H-elongata_contig109406:439..6461691679094.8075092-CDS-H-elongata_contig109406:439..646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109406 440..646 -
1622929621.6933239-CDS-H-elongata_contig109406:961..10991622929621.6933239-CDS-H-elongata_contig109406:961..1099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109406 962..1099 -
1691679094.815261-CDS-H-elongata_contig109406:961..10991691679094.815261-CDS-H-elongata_contig109406:961..1099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109406 962..1099 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109406.764.1prot_H-elongata_contig109406.764.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109406 440..1099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109406.764.1

>prot_H-elongata_contig109406.764.1 ID=prot_H-elongata_contig109406.764.1|Name=mRNA_H-elongata_contig109406.764.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MFGTFQQAHIGILTVTVARAQHLRSVSTLSTQDPYVRAKLLVDGYHTAEG
RTAVHNNGGRNPDWTGRGNVITFRLPPSVPFSRLAVVLEIHDENIVQDNM
IGTCGQIPLERVRS*
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mRNA from alignment at H-elongata_contig109406:440..1099-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109406.764.1 ID=mRNA_H-elongata_contig109406.764.1|Name=mRNA_H-elongata_contig109406.764.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=660bp|location=Sequence derived from alignment at H-elongata_contig109406:440..1099- (Himanthalia elongata Himel1 dioecious)
ATGTTTGGTACGTTCCAACAGGCGCACATCGGCATTCTAACGGTAACTGT
TGCCCGCGCTCAGCATCTGAGGAGCGTATCGACATTAAGCACACAGGATC
CGTACGTCAGGGCCAAGCTACTTGTAGATGGCTACCATGTGAGGTCACTG
AACGTTCAAGAAAGCCTGGTATTTCACAGGATTAATTGAAAATGGCCGTG
GGAACCCAGAAAAGGAGTGAAGGTTCCCCGACGAAGATGGGGCCTCTCAC
CACGGCAATGCGTGTTACGTGCTAGGTTGCTCTCAGTTTTCTTGAAGTTT
TTGCCAGCTCTAGAAAATATGTAGGTCTATCTTTCTTTCCAGCTGATTAT
TGTATTCCTTAGAGTATCATCCACATAGCTGCTGCACGTAGGCAACTATG
TCGTTGTTCTGCACCATCGCCAATTCCTTCCCCCGTTTCCATCTCCGACG
TAGACCGCTGAAGGAAGAACCGCCGTTCACAACAACGGTGGGAGAAACCC
GGACTGGACAGGGCGCGGGAATGTGATCACTTTTCGATTGCCGCCTTCCG
TACCATTCTCGAGACTGGCTGTGGTCCTAGAGATCCACGATGAAAACATC
GTTCAAGACAACATGATCGGCACCTGCGGCCAAATCCCTCTGGAAAGGGT
GAGATCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig109406:440..1099-

>mRNA_H-elongata_contig109406.764.1 ID=mRNA_H-elongata_contig109406.764.1|Name=mRNA_H-elongata_contig109406.764.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig109406:440..1099- (Himanthalia elongata Himel1 dioecious)
ATGTTTGGTACGTTCCAACAGGCGCACATCGGCATTCTAACGGTAACTGT
TGCCCGCGCTCAGCATCTGAGGAGCGTATCGACATTAAGCACACAGGATC
CGTACGTCAGGGCCAAGCTACTTGTAGATGGCTACCATATGTTTGGTACG
TTCCAACAGGCGCACATCGGCATTCTAACGGTAACTGTTGCCCGCGCTCA
GCATCTGAGGAGCGTATCGACATTAAGCACACAGGATCCGTACGTCAGGG
CCAAGCTACTTGTAGATGGCTACCATACCGCTGAAGGAAGAACCGCCGTT
CACAACAACGGTGGGAGAAACCCGGACTGGACAGGGCGCGGGAATGTGAT
CACTTTTCGATTGCCGCCTTCCGTACCATTCTCGAGACTGGCTGTGGTCC
TAGAGATCCACGATGAAAACATCGTTCAAGACAACATGATCGGCACCTGC
GGCCAAATCCCTCTGGAAAGGGTGAGATCCTGAACCGCTGAAGGAAGAAC
CGCCGTTCACAACAACGGTGGGAGAAACCCGGACTGGACAGGGCGCGGGA
ATGTGATCACTTTTCGATTGCCGCCTTCCGTACCATTCTCGAGACTGGCT
GTGGTCCTAGAGATCCACGATGAAAACATCGTTCAAGACAACATGATCGG
CACCTGCGGCCAAATCCCTCTGGAAAGGGTGAGATCCTGA
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