mRNA_H-elongata_contig109257.748.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109257.748.1
Unique NamemRNA_H-elongata_contig109257.748.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig109257.748.1 vs. uniprot
Match: D7FT17_ECTSI (RED_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT17_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 5.020e-35
Identity = 88/136 (64.71%), Postives = 96/136 (70.59%), Query Frame = 1 
Query:    1 RYVPPSSGASAAA--ANAKGATAGYFSGLRAQKGGEAGRAGTGAVGSLPTRAEMSATVKAAARAAAARLASDKKPSAPAARGGDGARMDRGGEGGSKIERDIFAKRPSRGQALGVASGGYDVYPETGDFETYDSDE 402
            RYVPP S  SA+     A GA  GYFSGLRA+    AG +       LPTRAEMSATVKAAARAAAAR++ DKK S+     G GAR      G  KIERDIFA RPSRGQALGV++GGYDVYPETGDFETYDSDE
Sbjct:  223 RYVPPGSAGSASQPPVGAAGAAKGYFSGLRAKN---AGDSADNKADVLPTRAEMSATVKAAARAAAARVSGDKKASS-----GAGARETGKSGGRDKIERDIFAARPSRGQALGVSAGGYDVYPETGDFETYDSDE 350
[Close]
BLAST of mRNA_H-elongata_contig109257.748.1 vs. uniprot
Match: A0A6H5L4J3_9PHAE (RED_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J3_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 4.200e-34
Identity = 87/136 (63.97%), Postives = 96/136 (70.59%), Query Frame = 1 
Query:    1 RYVPPSSGASAAA--ANAKGATAGYFSGLRAQKGGEAGRAGTGAVGSLPTRAEMSATVKAAARAAAARLASDKKPSAPAARGGDGARMDRGGEGGSKIERDIFAKRPSRGQALGVASGGYDVYPETGDFETYDSDE 402
            RYVPP S  SA+     A GA  GYFSGLRA+  G++          LPTRAEMSATVKAAARAAAAR++ DKK S+ A     GAR      G  KIERDIFA RPSRGQALGV++GGYDVYPETGDFETYDSDE
Sbjct:  353 RYVPPGSAGSASQPPVGAAGAAKGYFSGLRAKNAGDS----DNKADVLPTRAEMSATVKAAARAAAARVSGDKKTSSEA-----GARETGKSGGRDKIERDIFAARPSRGQALGVSAGGYDVYPETGDFETYDSDE 479
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109257.748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FT17_ECTSI5.020e-3564.71RED_N domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L4J3_9PHAE4.200e-3463.97RED_N domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109257contigH-elongata_contig109257:43..448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.0
Seed ortholog evalue1.3e-29
Seed eggNOG ortholog2880.D7FT17
Preferred nameIK
KEGG koko:K13109
GOsGO:0000075,GO:0000278,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0002119,GO:0002164,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005730,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007346,GO:0007399,GO:0007517,GO:0007528,GO:0007610,GO:0007638,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009987,GO:0010467,GO:0010468,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022008,GO:0022402,GO:0023052,GO:0030071,GO:0030154,GO:0030182,GO:0031323,GO:0031577,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033365,GO:0034501,GO:0034502,GO:0034613,GO:0034641,GO:0040011,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0046483,GO:0048024,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048644,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051179,GO:0051252,GO:0051641,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060255,GO:0061061,GO:0065007,GO:0070013,GO:0070727,GO:0071005,GO:0071011,GO:0071173,GO:0071174,GO:0071459,GO:0071704,GO:0071840,GO:0072553,GO:0080090,GO:0090304,GO:0098916,GO:0099172,GO:0099536,GO:0099537,GO:1901360,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1903311,GO:1905818,GO:1905819,GO:1990904,GO:2000816,GO:2001251
EggNOG free text desc.protein localization to kinetochore
EggNOG OGsKOG2498@1,KOG2498@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_002410.1
Exons1
Model size406
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929619.904128-CDS-H-elongata_contig109257:42..4471622929619.904128-CDS-H-elongata_contig109257:42..447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109257 43..447 +
1691679093.9559567-CDS-H-elongata_contig109257:42..4471691679093.9559567-CDS-H-elongata_contig109257:42..447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109257 43..447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109257.748.1prot_H-elongata_contig109257.748.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109257 43..447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109257.748.1

>prot_H-elongata_contig109257.748.1 ID=prot_H-elongata_contig109257.748.1|Name=mRNA_H-elongata_contig109257.748.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
RYVPPSSGASAAAANAKGATAGYFSGLRAQKGGEAGRAGTGAVGSLPTRA
EMSATVKAAARAAAARLASDKKPSAPAARGGDGARMDRGGEGGSKIERDI
FAKRPSRGQALGVASGGYDVYPETGDFETYDSDEA
back to top

mRNA from alignment at H-elongata_contig109257:43..448+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109257.748.1 ID=mRNA_H-elongata_contig109257.748.1|Name=mRNA_H-elongata_contig109257.748.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=406bp|location=Sequence derived from alignment at H-elongata_contig109257:43..448+ (Himanthalia elongata Himel1 dioecious)
AGGTACGTGCCGCCCTCCTCAGGGGCGTCGGCCGCTGCTGCAAACGCGAA
GGGGGCCACCGCCGGGTACTTTTCTGGACTCCGCGCTCAGAAGGGCGGCG
AGGCTGGCCGGGCAGGCACGGGCGCCGTGGGATCATTACCCACGAGGGCG
GAGATGAGCGCCACCGTTAAGGCCGCGGCGCGCGCTGCCGCGGCCCGACT
GGCGTCCGATAAAAAACCGTCTGCCCCCGCCGCTCGGGGTGGGGACGGGG
CGAGGATGGACCGGGGTGGCGAAGGAGGGTCGAAAATCGAACGAGATATA
TTTGCCAAGAGGCCGAGCCGCGGGCAGGCGTTGGGGGTCGCATCCGGGGG
CTATGACGTGTACCCGGAGACGGGAGACTTCGAGACGTACGACAGCGACG
AGGCGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig109257:43..448+

>mRNA_H-elongata_contig109257.748.1 ID=mRNA_H-elongata_contig109257.748.1|Name=mRNA_H-elongata_contig109257.748.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig109257:43..448+ (Himanthalia elongata Himel1 dioecious)
AGGTACGTGCCGCCCTCCTCAGGGGCGTCGGCCGCTGCTGCAAACGCGAA
GGGGGCCACCGCCGGGTACTTTTCTGGACTCCGCGCTCAGAAGGGCGGCG
AGGCTGGCCGGGCAGGCACGGGCGCCGTGGGATCATTACCCACGAGGGCG
GAGATGAGCGCCACCGTTAAGGCCGCGGCGCGCGCTGCCGCGGCCCGACT
GGCGTCCGATAAAAAACCGTCTGCCCCCGCCGCTCGGGGTGGGGACGGGG
CGAGGATGGACCGGGGTGGCGAAGGAGGGTCGAAAATCGAACGAGATATA
TTTGCCAAGAGGCCGAGCCGCGGGCAGGCGTTGGGGGTCGCATCCGGGGG
CTATGACGTGTACCCGGAGACGGGAGACTTCGAGACGTACGACAGCGACG
AGGCGAGGTACGTGCCGCCCTCCTCAGGGGCGTCGGCCGCTGCTGCAAAC
GCGAAGGGGGCCACCGCCGGGTACTTTTCTGGACTCCGCGCTCAGAAGGG
CGGCGAGGCTGGCCGGGCAGGCACGGGCGCCGTGGGATCATTACCCACGA
GGGCGGAGATGAGCGCCACCGTTAAGGCCGCGGCGCGCGCTGCCGCGGCC
CGACTGGCGTCCGATAAAAAACCGTCTGCCCCCGCCGCTCGGGGTGGGGA
CGGGGCGAGGATGGACCGGGGTGGCGAAGGAGGGTCGAAAATCGAACGAG
ATATATTTGCCAAGAGGCCGAGCCGCGGGCAGGCGTTGGGGGTCGCATCC
GGGGGCTATGACGTGTACCCGGAGACGGGAGACTTCGAGACGTACGACAG
CGACGAGGCG
back to top