mRNA_H-elongata_contig109124.738.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109124.738.1
Unique NamemRNA_H-elongata_contig109124.738.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig109124.738.1 vs. uniprot
Match: A0A6H5KQD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD8_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 1.280e-80
Identity = 119/123 (96.75%), Postives = 121/123 (98.37%), Query Frame = 1 
Query:    1 MIHEDSSDDLRTKSKRALKAILAKCTHLQALQPLLRDSPVKVQKYVLRQFAQLLPHDVEARRAFVQSGGLQFLQELNETVGGKLEEYIHAINGCYPPEIVEYYSPNYSKTLLEKIDEFQPMVA 369
            MIH DSSDDLRTKSKRALKAILAKCTHLQALQPLLRDSPVKVQKYVLRQFAQLLPHDVEARRAFVQ+GGLQFLQELNETVGGKLEEYIHAINGCYPPEIVEYYSPNYSK LL+KIDEFQPMVA
Sbjct:    1 MIHHDSSDDLRTKSKRALKAILAKCTHLQALQPLLRDSPVKVQKYVLRQFAQLLPHDVEARRAFVQNGGLQFLQELNETVGGKLEEYIHAINGCYPPEIVEYYSPNYSKVLLDKIDEFQPMVA 123
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BLAST of mRNA_H-elongata_contig109124.738.1 vs. uniprot
Match: D7G791_ECTSI (Putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G791_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 7.260e-76
Identity = 119/123 (96.75%), Postives = 122/123 (99.19%), Query Frame = 1 
Query:    1 MIHEDSSDDLRTKSKRALKAILAKCTHLQALQPLLRDSPVKVQKYVLRQFAQLLPHDVEARRAFVQSGGLQFLQELNETVGGKLEEYIHAINGCYPPEIVEYYSPNYSKTLLEKIDEFQPMVA 369
            MIH+DSSDDLRTKSKRALKAILAKCTHLQALQPLLRDSPVKVQKYVLRQFAQLLPHDVEARRAFVQ+GGLQFLQELNETVGGKLEEYIHAINGCYPPEIVEYYSPNYSK LL+KIDEFQPMVA
Sbjct:  387 MIHDDSSDDLRTKSKRALKAILAKCTHLQALQPLLRDSPVKVQKYVLRQFAQLLPHDVEARRAFVQNGGLQFLQELNETVGGKLEEYIHAINGCYPPEIVEYYSPNYSKVLLDKIDEFQPMVA 509
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BLAST of mRNA_H-elongata_contig109124.738.1 vs. uniprot
Match: A0A482STX6_9ARCH (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A482STX6_9ARCH)

HSP 1 Score: 218 bits (554), Expect = 9.170e-68
Identity = 106/122 (86.89%), Postives = 115/122 (94.26%), Query Frame = 1 
Query:    1 MIHEDSSDDLRTKSKRALKAILAKCTHLQALQPLLRDSPVKVQKYVLRQFAQLLPHDVEARRAFVQSGGLQFLQELNETVGGKLEEYIHAINGCYPPEIVEYYSPNYSKTLLEKIDEFQPMV 366
            M+HEDSS+DL+TKSKRALKAILAKCTHLQALQPLLRDSPVKVQKYVLRQFAQLLPHDV ARRAFVQSGGLQFLQELNETVGGKL E+I  IN CYP E+VE+YSPNYSKTLL+K+DE+QP V
Sbjct:  266 MVHEDSSEDLKTKSKRALKAILAKCTHLQALQPLLRDSPVKVQKYVLRQFAQLLPHDVAARRAFVQSGGLQFLQELNETVGGKLSEFIIQINNCYPQEVVEFYSPNYSKTLLQKVDEYQPEV 387
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BLAST of mRNA_H-elongata_contig109124.738.1 vs. uniprot
Match: T0QM12_SAPDV (Sperm-associated antigen 6 n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0QM12_SAPDV)

HSP 1 Score: 209 bits (531), Expect = 4.860e-63
Identity = 98/122 (80.33%), Postives = 114/122 (93.44%), Query Frame = 1 
Query:    1 MIHEDSSDDLRTKSKRALKAILAKCTHLQALQPLLRDSPVKVQKYVLRQFAQLLPHDVEARRAFVQSGGLQFLQELNETVGGKLEEYIHAINGCYPPEIVEYYSPNYSKTLLEKIDEFQPMV 366
            MIH +SSDDL+TK+KRALK+ILAKCTHLQALQPLLRD+P+KVQKY+L+QFAQ+LPHD+EARR+FVQ+GGLQFLQEL+E  GGKL EYI  IN CYPPEIVEYYSPNYSKTLL+K+DE+QP V
Sbjct:  387 MIHPNSSDDLKTKAKRALKSILAKCTHLQALQPLLRDAPMKVQKYILKQFAQMLPHDLEARRSFVQNGGLQFLQELSEAAGGKLTEYIMEINNCYPPEIVEYYSPNYSKTLLDKLDEYQPQV 508
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BLAST of mRNA_H-elongata_contig109124.738.1 vs. uniprot
Match: A0A3R6WK16_9STRA (Uncharacterized protein (Fragment) n=15 Tax=Oomycota TaxID=4762 RepID=A0A3R6WK16_9STRA)

HSP 1 Score: 207 bits (528), Expect = 5.940e-63
Identity = 98/122 (80.33%), Postives = 113/122 (92.62%), Query Frame = 1 
Query:    1 MIHEDSSDDLRTKSKRALKAILAKCTHLQALQPLLRDSPVKVQKYVLRQFAQLLPHDVEARRAFVQSGGLQFLQELNETVGGKLEEYIHAINGCYPPEIVEYYSPNYSKTLLEKIDEFQPMV 366
            M H +SSDDL+TK+KRALK+ILAKCTHLQALQPLLRD+P+KVQKY+L+QFAQ+LPHD+EARR+FVQ+GGLQFLQEL+E  GGKL EYI  IN CYPPEIVEYYSPNYSKTLL+K+DEFQP V
Sbjct:  350 MTHPNSSDDLKTKAKRALKSILAKCTHLQALQPLLRDAPMKVQKYILKQFAQMLPHDLEARRSFVQNGGLQFLQELSEAAGGKLTEYILEINNCYPPEIVEYYSPNYSKTLLDKLDEFQPQV 471
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BLAST of mRNA_H-elongata_contig109124.738.1 vs. uniprot
Match: H3G9L6_PHYRM (Uncharacterized protein n=44 Tax=Oomycota TaxID=4762 RepID=H3G9L6_PHYRM)

HSP 1 Score: 201 bits (510), Expect = 6.350e-60
Identity = 94/122 (77.05%), Postives = 112/122 (91.80%), Query Frame = 1 
Query:    1 MIHEDSSDDLRTKSKRALKAILAKCTHLQALQPLLRDSPVKVQKYVLRQFAQLLPHDVEARRAFVQSGGLQFLQELNETVGGKLEEYIHAINGCYPPEIVEYYSPNYSKTLLEKIDEFQPMV 366
            MIH +SSDDLR KSKRALK+ILAKCTHLQALQPLLRD+P+KVQKY+L+QFAQ+LPHD+EARR+FVQ+GGL+ LQ+L+E  GGKL EYI  IN CYPPEIVEYYSP+YSKTLL+K+D++QP V
Sbjct:  387 MIHPNSSDDLRIKSKRALKSILAKCTHLQALQPLLRDAPLKVQKYILKQFAQMLPHDLEARRSFVQNGGLELLQQLSEAAGGKLTEYILEINNCYPPEIVEYYSPHYSKTLLDKLDDYQPQV 508
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BLAST of mRNA_H-elongata_contig109124.738.1 vs. uniprot
Match: A0A835ZF63_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF63_9STRA)

HSP 1 Score: 199 bits (506), Expect = 2.700e-59
Identity = 98/119 (82.35%), Postives = 106/119 (89.08%), Query Frame = 1 
Query:    1 MIHEDSSDDLRTKSKRALKAILAKCTHLQALQPLLRDSPVKVQKYVLRQFAQLLPHDVEARRAFVQSGGLQFLQELNETVGGKLEEYIHAINGCYPPEIVEYYSPNYSKTLLEKIDEFQ 357
            M H DSS+DLR K+KRALKA+LAKCTHL ALQPLLRD+P K QKYVLRQFA LLPHDV+ARRAFVQSGGLQ+LQEL E   GKLEEYI AIN CYPPE+VEYYSPNYSKTLL+KIDEFQ
Sbjct:  387 MSHPDSSEDLRLKAKRALKAVLAKCTHLAALQPLLRDAPPKAQKYVLRQFATLLPHDVDARRAFVQSGGLQYLQELAEGGAGKLEEYISAINACYPPEVVEYYSPNYSKTLLDKIDEFQ 505
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BLAST of mRNA_H-elongata_contig109124.738.1 vs. uniprot
Match: A0A7S2G6F1_9STRA (Hypothetical protein n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A7S2G6F1_9STRA)

HSP 1 Score: 196 bits (497), Expect = 6.670e-58
Identity = 96/119 (80.67%), Postives = 109/119 (91.60%), Query Frame = 1 
Query:    1 MIHEDSSDDLRTKSKRALKAILAKCTHLQALQPLLRDSPVKVQKYVLRQFAQLLPHDVEARRAFVQSGGLQFLQELNETVGGKLEEYIHAINGCYPPEIVEYYSPNYSKTLLEKIDEFQ 357
            M+H DSS+DL+TKSKRALKAILAKCTHLQALQPLLR++PVKVQKYVL+QFA +LP DVEARRAFVQ+GGLQFLQELNETVGGKLEE+I  IN CYP EIV++YSP+YSK LLEKI + Q
Sbjct:  400 MVHVDSSEDLKTKSKRALKAILAKCTHLQALQPLLREAPVKVQKYVLKQFASILPKDVEARRAFVQNGGLQFLQELNETVGGKLEEFITQINNCYPEEIVQFYSPHYSKELLEKITDAQ 518
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BLAST of mRNA_H-elongata_contig109124.738.1 vs. uniprot
Match: A0A813CD50_9DINO (SPAG6 protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813CD50_9DINO)

HSP 1 Score: 153 bits (386), Expect = 1.610e-44
Identity = 72/118 (61.02%), Postives = 99/118 (83.90%), Query Frame = 1 
Query:    4 IHEDSSDDLRTKSKRALKAILAKCTHLQALQPLLRDSPVKVQKYVLRQFAQLLPHDVEARRAFVQSGGLQFLQELNETVGGKLEEYIHAINGCYPPEIVEYYSPNYSKTLLEKIDEFQ 357
            +H+DSS+DLRTK+KRALK+++ KCTHL AL+PLL ++P  + KYV++QFA++LP D+ AR++FVQSGGLQ +QE+   VG KL +YI  IN  YPPEIV+YYSPNY++TLL+K++E Q
Sbjct:   11 LHQDSSEDLRTKAKRALKSVIQKCTHLPALEPLL-EAPPNILKYVVQQFAKVLPSDLNARKSFVQSGGLQKIQEVKAEVGSKLHDYIEEINMLYPPEIVQYYSPNYAETLLKKMEESQ 127
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BLAST of mRNA_H-elongata_contig109124.738.1 vs. uniprot
Match: A0A7S3WLK5_9SPIT (Hypothetical protein n=2 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WLK5_9SPIT)

HSP 1 Score: 151 bits (381), Expect = 8.210e-44
Identity = 69/119 (57.98%), Postives = 100/119 (84.03%), Query Frame = 1 
Query:    4 IHEDSSDDLRTKSKRALKAILAKCTHLQALQPLLRDSPVKVQKYVLRQFAQLLPHDVEARRAFVQSGGLQFLQELNETVGGKLEEYIHAINGCYPPEIVEYYSPNYSKTLLEKIDEFQP 360
            +H+DSS+DL+TK+KR+LK+++ KCT L AL+PLL ++P  + KYV++QFA++LP+D+ AR+ FVQSGGLQ +QE++   G KL +YI+ IN  YPPEIV+YYSPNY++TL++K+DEF P
Sbjct:   91 LHQDSSEDLQTKAKRSLKSVIQKCTTLPALEPLL-EAPPNILKYVVQQFAKVLPNDLNARKNFVQSGGLQKIQEVSAEAGSKLNDYINEINALYPPEIVQYYSPNYAETLIKKMDEFNP 208
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109124.738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQD8_9PHAE1.280e-8096.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G791_ECTSI7.260e-7696.75Putative n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A482STX6_9ARCH9.170e-6886.89Uncharacterized protein n=2 Tax=cellular organisms... [more]
T0QM12_SAPDV4.860e-6380.33Sperm-associated antigen 6 n=2 Tax=Saprolegniaceae... [more]
A0A3R6WK16_9STRA5.940e-6380.33Uncharacterized protein (Fragment) n=15 Tax=Oomyco... [more]
H3G9L6_PHYRM6.350e-6077.05Uncharacterized protein n=44 Tax=Oomycota TaxID=47... [more]
A0A835ZF63_9STRA2.700e-5982.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2G6F1_9STRA6.670e-5880.67Hypothetical protein n=2 Tax=Dictyochophyceae TaxI... [more]
A0A813CD50_9DINO1.610e-4461.02SPAG6 protein (Fragment) n=1 Tax=Symbiodinium necr... [more]
A0A7S3WLK5_9SPIT8.210e-4457.98Hypothetical protein n=2 Tax=Strombidinopsis acumi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109124contigH-elongata_contig109124:892..1744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score243.4
Seed ortholog evalue5.5e-62
Seed eggNOG ortholog2880.D7G791
Preferred nameSPAG6
GOsGO:0000003,GO:0000226,GO:0001578,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007288,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0019953,GO:0021591,GO:0022412,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030317,GO:0031514,GO:0032501,GO:0032502,GO:0032504,GO:0032838,GO:0035082,GO:0036126,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0051179,GO:0051674,GO:0051704,GO:0060271,GO:0060322,GO:0070925,GO:0071840,GO:0097014,GO:0097223,GO:0097228,GO:0097722,GO:0097729,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1990716
EggNOG free text desc.nuclear import signal receptor activity
EggNOG OGsCOG5064@1,KOG0166@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-04_003710.1
Exons3
Model size372
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109124.738.1prot_H-elongata_contig109124.738.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109124 892..1744 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929618.7462974-CDS-H-elongata_contig109124:891..10411622929618.7462974-CDS-H-elongata_contig109124:891..1041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109124 892..1041 -
1691679093.5523596-CDS-H-elongata_contig109124:891..10411691679093.5523596-CDS-H-elongata_contig109124:891..1041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109124 892..1041 -
1622929618.77565-CDS-H-elongata_contig109124:1244..13791622929618.77565-CDS-H-elongata_contig109124:1244..1379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109124 1245..1379 -
1691679093.5638556-CDS-H-elongata_contig109124:1244..13791691679093.5638556-CDS-H-elongata_contig109124:1244..1379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109124 1245..1379 -
1622929618.7916946-CDS-H-elongata_contig109124:1657..17441622929618.7916946-CDS-H-elongata_contig109124:1657..1744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109124 1658..1744 -
1691679093.5728843-CDS-H-elongata_contig109124:1657..17441691679093.5728843-CDS-H-elongata_contig109124:1657..1744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109124 1658..1744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109124.738.1

>prot_H-elongata_contig109124.738.1 ID=prot_H-elongata_contig109124.738.1|Name=mRNA_H-elongata_contig109124.738.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MIHEDSSDDLRTKSKRALKAILAKCTHLQALQPLLRDSPVKVQKYVLRQF
AQLLPHDVEARRAFVQSGGLQFLQELNETVGGKLEEYIHAINGCYPPEIV
EYYSPNYSKTLLEKIDEFQPMVA*
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mRNA from alignment at H-elongata_contig109124:892..1744-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109124.738.1 ID=mRNA_H-elongata_contig109124.738.1|Name=mRNA_H-elongata_contig109124.738.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=853bp|location=Sequence derived from alignment at H-elongata_contig109124:892..1744- (Himanthalia elongata Himel1 dioecious)
ATGATTCACGAGGACAGCAGCGACGATCTCAGGACCAAGAGCAAGCGCGC
CCTCAAGGCTATTCTTGCCAAGTGTACTCACTTACAGGTACTTCCTGTCT
GTAACACCCATTTTCTTGCGCCATGCTCAACCCCTCTTCAATCGCATACG
CAAGCACTATACAAAATATCATATTGGTATCGCAGGAATGATGAGGAGCA
AGCAACGCAGGTCCGAGACGTCTTTAGACTTGCGAATGGAGTGGGAACGA
CGGGCGCGACAAAGATGACGCAGTTTGCACTCCGTAGTCTCGTTGGAAAA
GTGTCACGGCTATAATTTGCCTAGCCCCTCTTTTGCGTCGATGTATTTTT
GCTGAACGACTGCAGGCTCTCCAGCCCCTGCTGCGCGACAGCCCGGTCAA
GGTTCAGAAGTACGTTCTCAGGCAGTTTGCACAGCTTCTGCCTCACGACG
TGGAAGCACGGAGGGCGTTCGTACAGAGCGGAGGCCTCCAATTTCTCCAG
GTATATGTAGATGAATCAAAGGGCAAGTCAAGCCTGATAGTGGGAGGGAG
CATCGAGGGAACACTCACGACGGAAGCAAAGTTATATTCCGTGCCTTCTT
TTGTACTATTACAGTGGTGGGATCAAACCCTACTTTCATTTTGTACTGGG
CTCAATTATTCCCTGACGGCGGAACGGTGCACGGTGGCTCCTTAAATGTG
CAGGAATTGAACGAAACGGTGGGGGGAAAGCTGGAGGAGTACATTCACGC
CATCAATGGCTGCTATCCCCCCGAGATCGTGGAGTACTACAGCCCCAACT
ACTCCAAGACGTTGCTCGAGAAGATCGACGAGTTCCAACCGATGGTGGCA
TGA
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Coding sequence (CDS) from alignment at H-elongata_contig109124:892..1744-

>mRNA_H-elongata_contig109124.738.1 ID=mRNA_H-elongata_contig109124.738.1|Name=mRNA_H-elongata_contig109124.738.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig109124:892..1744- (Himanthalia elongata Himel1 dioecious)
ATGATTCACGAGGACAGCAGCGACGATCTCAGGACCAAGAGCAAGCGCGC
CCTCAAGGCTATTCTTGCCAAGTGTACTCACTTACAGATGATTCACGAGG
ACAGCAGCGACGATCTCAGGACCAAGAGCAAGCGCGCCCTCAAGGCTATT
CTTGCCAAGTGTACTCACTTACAGGCTCTCCAGCCCCTGCTGCGCGACAG
CCCGGTCAAGGTTCAGAAGTACGTTCTCAGGCAGTTTGCACAGCTTCTGC
CTCACGACGTGGAAGCACGGAGGGCGTTCGTACAGAGCGGAGGCCTCCAA
TTTCTCCAGGCTCTCCAGCCCCTGCTGCGCGACAGCCCGGTCAAGGTTCA
GAAGTACGTTCTCAGGCAGTTTGCACAGCTTCTGCCTCACGACGTGGAAG
CACGGAGGGCGTTCGTACAGAGCGGAGGCCTCCAATTTCTCCAGGAATTG
AACGAAACGGTGGGGGGAAAGCTGGAGGAGTACATTCACGCCATCAATGG
CTGCTATCCCCCCGAGATCGTGGAGTACTACAGCCCCAACTACTCCAAGA
CGTTGCTCGAGAAGATCGACGAGTTCCAACCGATGGTGGCATGAGAATTG
AACGAAACGGTGGGGGGAAAGCTGGAGGAGTACATTCACGCCATCAATGG
CTGCTATCCCCCCGAGATCGTGGAGTACTACAGCCCCAACTACTCCAAGA
CGTTGCTCGAGAAGATCGACGAGTTCCAACCGATGGTGGCATGA
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