mRNA_H-elongata_contig10909.733.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10909.733.1
Unique NamemRNA_H-elongata_contig10909.733.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10909.733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10909contigH-elongata_contig10909:2560..2997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929617.8592997-CDS-H-elongata_contig10909:2559..27361622929617.8592997-CDS-H-elongata_contig10909:2559..2736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10909 2560..2736 +
1691679093.2702625-CDS-H-elongata_contig10909:2559..27361691679093.2702625-CDS-H-elongata_contig10909:2559..2736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10909 2560..2736 +
1622929617.8849719-CDS-H-elongata_contig10909:2868..29971622929617.8849719-CDS-H-elongata_contig10909:2868..2997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10909 2869..2997 +
1691679093.2798479-CDS-H-elongata_contig10909:2868..29971691679093.2798479-CDS-H-elongata_contig10909:2868..2997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10909 2869..2997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10909.733.1prot_H-elongata_contig10909.733.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10909 2560..2997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10909.733.1

>prot_H-elongata_contig10909.733.1 ID=prot_H-elongata_contig10909.733.1|Name=mRNA_H-elongata_contig10909.733.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
RNSAVQAWIKRSGSSTQRTMEFIQFHAGRSPVMHAALVGSPKVVSEILGY
MREATDLSEGIESALENRTSKSSLLLSAAHGGSEEVFKEVMQLEARTKVS
T*
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mRNA from alignment at H-elongata_contig10909:2560..2997+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10909.733.1 ID=mRNA_H-elongata_contig10909.733.1|Name=mRNA_H-elongata_contig10909.733.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=438bp|location=Sequence derived from alignment at H-elongata_contig10909:2560..2997+ (Himanthalia elongata Himel1 dioecious)
AGGAATTCGGCGGTTCAAGCGTGGATAAAAAGATCAGGATCATCCACGCA
GCGGACAATGGAATTCATACAGTTTCACGCTGGAAGATCACCAGTCATGC
ATGCCGCTCTGGTTGGCTCCCCTAAAGTGGTGTCAGAAATCTTGGGCTAC
ATGCGCGAAGCTACTGATCTTTCTGAGGCGAGTAAGGGGAGTATTCAAGT
TCCTTTTTCATGAACGCCTGCCTTATCGGCGTCGCTGTCTCTTCGTGAGT
ATGTATTCTTTCGATAACATAAAGCCTCTCACTTCACCTGGCCATGTAAT
CTTGGGTAGGGAATCGAAAGTGCTCTAGAAAATCGCACGTCGAAGTCGTC
GTTACTGCTATCAGCAGCTCACGGAGGGAGCGAAGAGGTGTTCAAGGAAG
TCATGCAGCTCGAGGCACGGACGAAAGTGAGCACGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig10909:2560..2997+

>mRNA_H-elongata_contig10909.733.1 ID=mRNA_H-elongata_contig10909.733.1|Name=mRNA_H-elongata_contig10909.733.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig10909:2560..2997+ (Himanthalia elongata Himel1 dioecious)
AGGAATTCGGCGGTTCAAGCGTGGATAAAAAGATCAGGATCATCCACGCA
GCGGACAATGGAATTCATACAGTTTCACGCTGGAAGATCACCAGTCATGC
ATGCCGCTCTGGTTGGCTCCCCTAAAGTGGTGTCAGAAATCTTGGGCTAC
ATGCGCGAAGCTACTGATCTTTCTGAGAGGAATTCGGCGGTTCAAGCGTG
GATAAAAAGATCAGGATCATCCACGCAGCGGACAATGGAATTCATACAGT
TTCACGCTGGAAGATCACCAGTCATGCATGCCGCTCTGGTTGGCTCCCCT
AAAGTGGTGTCAGAAATCTTGGGCTACATGCGCGAAGCTACTGATCTTTC
TGAGGGAATCGAAAGTGCTCTAGAAAATCGCACGTCGAAGTCGTCGTTAC
TGCTATCAGCAGCTCACGGAGGGAGCGAAGAGGTGTTCAAGGAAGTCATG
CAGCTCGAGGCACGGACGAAAGTGAGCACGTGAGGAATCGAAAGTGCTCT
AGAAAATCGCACGTCGAAGTCGTCGTTACTGCTATCAGCAGCTCACGGAG
GGAGCGAAGAGGTGTTCAAGGAAGTCATGCAGCTCGAGGCACGGACGAAA
GTGAGCACGTGA
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