mRNA_H-elongata_contig109083.731.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109083.731.1
Unique NamemRNA_H-elongata_contig109083.731.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig109083.731.1 vs. uniprot
Match: A0A6H5L3G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G6_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 8.590e-29
Identity = 54/88 (61.36%), Postives = 65/88 (73.86%), Query Frame = 1
Query:   10 QVFTWGHGNTGALGHGDNEDQPQPRLVQPFGHQSSREV----------DPNLLASSVSCGAWHTVVLTVSGKVFAFGDGFTGQLGLED 243
            +VFTWGHG+TGALGHG  ED+P PR+V  FG    R            D ++LA+SV+CGAWHT+VLT +GKV+AFGDGFTGQLGLED
Sbjct:   64 KVFTWGHGSTGALGHGVAEDEPTPRMVSGFGRDVDRSATQGTDEQDGPDADVLATSVACGAWHTLVLTKAGKVYAFGDGFTGQLGLED 151          
BLAST of mRNA_H-elongata_contig109083.731.1 vs. uniprot
Match: D8LS90_ECTSI (eIF3_p135 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS90_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 3.230e-27
Identity = 54/88 (61.36%), Postives = 65/88 (73.86%), Query Frame = 1
Query:   10 QVFTWGHGNTGALGHGDNEDQPQPRLVQPFGHQSSREV----------DPNLLASSVSCGAWHTVVLTVSGKVFAFGDGFTGQLGLED 243
            +VFTWGHG+TGALGHG  ED+P PR+V  FG   +R            D ++LA+SV+CGAWHT+VLT +GKV AFGDGFTGQLGLED
Sbjct: 1779 KVFTWGHGSTGALGHGVAEDEPTPRMVSGFGRDEARSAPQGAGEQDDPDADILATSVACGAWHTLVLTKAGKVHAFGDGFTGQLGLED 1866          
BLAST of mRNA_H-elongata_contig109083.731.1 vs. uniprot
Match: A0A0P1B3E4_PLAHL (Regulator of chromosome condensation-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B3E4_PLAHL)

HSP 1 Score: 69.7 bits (169), Expect = 4.510e-12
Identity = 37/80 (46.25%), Postives = 44/80 (55.00%), Query Frame = 1
Query:    4 CTQVFTWGHGNTGALGHGDNEDQPQPRLVQPFGHQSSREVDPNLLASSVSCGAWHTVVLTVSGKVFAFGDGFTGQLGLED 243
            C +++TWG G  G LGHGD  D+  PR V     Q+           S SCG  HTVVLT  G VF+FG G  G+LGL D
Sbjct:  515 CGELYTWGSGEDGRLGHGDMRDRTVPRKVMTLLRQN---------VVSASCGGAHTVVLTEKGSVFSFGRGRNGRLGLGD 585          
BLAST of mRNA_H-elongata_contig109083.731.1 vs. uniprot
Match: K3WC09_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WC09_GLOUD)

HSP 1 Score: 68.9 bits (167), Expect = 7.190e-12
Identity = 33/79 (41.77%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   10 QVFTWGHGNTGALGHGDNEDQPQP-RLVQPFGHQSSREVDPNLLASSVSCGAWHTVVLTVSGKVFAFGDGFTGQLGLED 243
            +VFTWG GN+GALG+G  E++  P ++V P+  +  R+       +S++CG++HT+V T +GK++ +GD   GQLG E+
Sbjct:  246 EVFTWGFGNSGALGNGTRENRLLPDKIVGPWAAEQDRD-GKAAAVTSIACGSYHTLVSTSTGKLYGWGDSAAGQLGAEN 323          
BLAST of mRNA_H-elongata_contig109083.731.1 vs. uniprot
Match: H3C3U0_TETNG (HECT domain-containing protein n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3C3U0_TETNG)

HSP 1 Score: 67.4 bits (163), Expect = 2.920e-11
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 1
Query:    1 MCTQVFTWGHGNTGALGHGDNEDQPQPRLVQPFGHQSSREVDPNLLASSVSCGAWHTVVLTVSGKVFAFGDGFTGQLG 234
            M  +VFT+G G  G LGHG   D+ +PRLV+  G            AS +SCG++HT+VL  SG ++AFG G  GQ+G
Sbjct:  255 MNGEVFTFGEGCHGQLGHGSTADELRPRLVESVGRH----------ASQISCGSYHTLVLGSSGHIWAFGSGNKGQIG 322          
BLAST of mRNA_H-elongata_contig109083.731.1 vs. uniprot
Match: H3C0L9_TETNG (HECT domain-containing protein n=2 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3C0L9_TETNG)

HSP 1 Score: 67.4 bits (163), Expect = 2.920e-11
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 1
Query:    1 MCTQVFTWGHGNTGALGHGDNEDQPQPRLVQPFGHQSSREVDPNLLASSVSCGAWHTVVLTVSGKVFAFGDGFTGQLG 234
            M  +VFT+G G  G LGHG   D+ +PRLV+  G            AS +SCG++HT+VL  SG ++AFG G  GQ+G
Sbjct:  253 MNGEVFTFGEGCHGQLGHGSTADELRPRLVESVGRH----------ASQISCGSYHTLVLGSSGHIWAFGSGNKGQIG 320          
BLAST of mRNA_H-elongata_contig109083.731.1 vs. uniprot
Match: A0A2P4XMA0_9STRA (Regulator of chromosome condensation (RCC1)-like protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XMA0_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 4.020e-11
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   13 VFTWGHGNTGALGHGDNEDQPQPRLVQ-PFGHQSSREVDPNLLAS------SVSCGAWHTVVLTVSGKVFAFGDGFTGQLGLE 240
            VFTWG G++GALGHG+ ++  +P+L++ P+   S+ E D   L S      S++CG++HT+  T  G ++ +GD   GQLG+E
Sbjct:  816 VFTWGFGSSGALGHGNQDNCLEPKLLEGPWTKGSNLEFDGEHLTSEASIVTSIACGSYHTLASTSDGVLYGWGDAAAGQLGVE 898          
BLAST of mRNA_H-elongata_contig109083.731.1 vs. uniprot
Match: A0A662XMD5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XMD5_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 7.520e-11
Identity = 31/78 (39.74%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   13 VFTWGHGNTGALGHGDNEDQPQP-RLVQPFGHQSSREVDPNL-LASSVSCGAWHTVVLTVSGKVFAFGDGFTGQLGLE 240
            VFTWG G++GALGHGD +++  P RL  P+  Q   +++ +  + ++V+CG++HT+     G ++ +GD   GQLG+E
Sbjct: 1376 VFTWGFGSSGALGHGDRDNRLVPQRLAGPWTRQQGEDLEIDAAVVTAVACGSYHTLACLSDGVLYGWGDAAAGQLGIE 1453          
BLAST of mRNA_H-elongata_contig109083.731.1 vs. uniprot
Match: H3GZM4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GZM4_PHYRM)

HSP 1 Score: 66.2 bits (160), Expect = 7.550e-11
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 1
Query:   13 VFTWGHGNTGALGHGDNEDQPQPRLVQ-PFGHQSSREVDPNLLAS------SVSCGAWHTVVLTVSGKVFAFGDGFTGQLGLE 240
            VFTWG G++GALGHG+ ++  +PRL++ P+      E D   L+S      S++CG +HT+  T  G ++ +GD   GQLG+E
Sbjct: 1482 VFTWGFGSSGALGHGNRDNCLEPRLLEGPWTSSVDVEFDGENLSSESPVVTSIACGGYHTLAATSGGVLYGWGDAAAGQLGVE 1564          
BLAST of mRNA_H-elongata_contig109083.731.1 vs. uniprot
Match: A0A8C6U8S7_9GOBI (Uncharacterized protein n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6U8S7_9GOBI)

HSP 1 Score: 65.1 bits (157), Expect = 1.020e-10
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    4 CTQVFTWGHGNTGALGHGDNEDQPQPRLVQPFGHQSSREVDPNLLASSVSCGAWHTVVLTVSGKVFAFGDGFTGQLG 234
            C QV+T+G G+ G LGH    ++ +PRLV+            + LAS ++CG  HT+VL+ SG+ +AFGDG  GQ+G
Sbjct:  173 CGQVWTFGDGSHGQLGHNSTANELKPRLVEGL----------DGLASQIACGRRHTLVLSASGRCWAFGDGVKGQMG 239          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109083.731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3G6_9PHAE8.590e-2961.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS90_ECTSI3.230e-2761.36eIF3_p135 domain-containing protein n=1 Tax=Ectoca... [more]
A0A0P1B3E4_PLAHL4.510e-1246.25Regulator of chromosome condensation-like protein ... [more]
K3WC09_GLOUD7.190e-1241.77Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
H3C3U0_TETNG2.920e-1144.87HECT domain-containing protein n=1 Tax=Tetraodon n... [more]
H3C0L9_TETNG2.920e-1144.87HECT domain-containing protein n=2 Tax=Tetraodon n... [more]
A0A2P4XMA0_9STRA4.020e-1140.96Regulator of chromosome condensation (RCC1)-like p... [more]
A0A662XMD5_9STRA7.520e-1139.74Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
H3GZM4_PHYRM7.550e-1140.96Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A8C6U8S7_9GOBI1.020e-1042.86Uncharacterized protein n=1 Tax=Neogobius melanost... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109083contigH-elongata_contig109083:1546..1851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue2.5e-23
Seed eggNOG ortholog2880.D8LS90
EggNOG free text desc.Regulator of chromosome condensation (RCC1) repeat
EggNOG OGs2S0QB@2759,COG5184@1
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRegulator of chromosome condensation, RCC1
Ec32 orthologEc-12_004400.1
Exons2
Model size243
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929617.7017686-CDS-H-elongata_contig109083:1545..16671622929617.7017686-CDS-H-elongata_contig109083:1545..1667Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109083 1546..1667 -
1691679093.2044952-CDS-H-elongata_contig109083:1545..16671691679093.2044952-CDS-H-elongata_contig109083:1545..1667Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109083 1546..1667 -
1622929617.7181528-CDS-H-elongata_contig109083:1730..18511622929617.7181528-CDS-H-elongata_contig109083:1730..1851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109083 1731..1851 -
1691679093.2167826-CDS-H-elongata_contig109083:1730..18511691679093.2167826-CDS-H-elongata_contig109083:1730..1851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109083 1731..1851 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109083.731.1prot_H-elongata_contig109083.731.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109083 1546..1851 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109083.731.1

>prot_H-elongata_contig109083.731.1 ID=prot_H-elongata_contig109083.731.1|Name=mRNA_H-elongata_contig109083.731.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MCTQVFTWGHGNTGALGHGDNEDQPQPRLVQPFGHQSSREVDPNLLASSV
SCGAWHTVVLTVSGKVFAFGDGFTGQLGLED
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mRNA from alignment at H-elongata_contig109083:1546..1851-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109083.731.1 ID=mRNA_H-elongata_contig109083.731.1|Name=mRNA_H-elongata_contig109083.731.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=306bp|location=Sequence derived from alignment at H-elongata_contig109083:1546..1851- (Himanthalia elongata Himel1 dioecious)
ATGTGTACACAGGTGTTCACGTGGGGTCACGGGAACACGGGCGCGCTGGG GCACGGTGACAACGAGGACCAGCCGCAGCCGAGGCTCGTGCAACCGTTCG GTCACCAGTCCTCGAGAGAAGGTGACGCAAAGGTTTTGATGGACCCCGCG GAGGCGGGGCATGCTGGTGCTGGCGGTGCCGGAGTTGATCCTAACCTCCT GGCTAGCAGCGTCTCGTGCGGGGCGTGGCACACCGTCGTGCTGACTGTCT CCGGTAAGGTCTTCGCATTCGGTGACGGCTTCACGGGACAGCTGGGGCTC GAAGAC
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Coding sequence (CDS) from alignment at H-elongata_contig109083:1546..1851-

>mRNA_H-elongata_contig109083.731.1 ID=mRNA_H-elongata_contig109083.731.1|Name=mRNA_H-elongata_contig109083.731.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig109083:1546..1851- (Himanthalia elongata Himel1 dioecious)
ATGTGTACACAGGTGTTCACGTGGGGTCACGGGAACACGGGCGCGCTGGG
GCACGGTGACAACGAGGACCAGCCGCAGCCGAGGCTCGTGCAACCGTTCG
GTCACCAGTCCTCGAGAGAAGATGTGTACACAGGTGTTCACGTGGGGTCA
CGGGAACACGGGCGCGCTGGGGCACGGTGACAACGAGGACCAGCCGCAGC
CGAGGCTCGTGCAACCGTTCGGTCACCAGTCCTCGAGAGAAGTTGATCCT
AACCTCCTGGCTAGCAGCGTCTCGTGCGGGGCGTGGCACACCGTCGTGCT
GACTGTCTCCGGTAAGGTCTTCGCATTCGGTGACGGCTTCACGGGACAGC
TGGGGCTCGAAGACTTGATCCTAACCTCCTGGCTAGCAGCGTCTCGTGCG
GGGCGTGGCACACCGTCGTGCTGACTGTCTCCGGTAAGGTCTTCGCATTC
GGTGACGGCTTCACGGGACAGCTGGGGCTCGAAGAC
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