prot_H-elongata_contig108759.712.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig108759.712.1
Unique Name	prot_H-elongata_contig108759.712.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	177

Homology

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BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot
Match: D7FW72_ECTSI (Arginine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW72_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 3.340e-81
Identity = 137/176 (77.84%), Postives = 147/176 (83.52%), Query Frame = 0

Query:    1 MDAGKVTTTPEAAAVSAAEMGYGAVKYFDLRQHPTTSYVFSYDRMLDTRGNTAVYLQFAHARLASILRKAQDELNVDLDALRXXXXXXXXXXXXXXXXXXXXXXFSDVIEACLSDLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQYSRLLLCDATGVTMRTCFSLLGMKALDRI 176
            MD GK+TTT EAAA +AAE+GYGAVKY+DLRQHP+TSYVFSYDRMLDTRGNTAVYLQFAHARLASIL KAQDEL+VD+ AL+                      FSDVIEACL+DLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQ SRLLLC+ATGVTMR CFSLLGMKALDRI
Sbjct:  731 MDEGKMTTTKEAAAAAAAEIGYGAVKYYDLRQHPSTSYVFSYDRMLDTRGNTAVYLQFAHARLASILLKAQDELHVDVTALKASPEKVSVEHESERALAFELLMFSDVIEACLADLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQTSRLLLCEATGVTMRKCFSLLGMKALDRI 906

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BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot
Match: A0A7S3NN71_9STRA (Arginine--tRNA ligase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NN71_9STRA)

HSP 1 Score: 178 bits (451), Expect = 8.280e-49
Identity = 95/177 (53.67%), Postives = 115/177 (64.97%), Query Frame = 0

Query:    3 AGKVTTTPEAAAVSAAEMGYGAVKYFDLRQHPTTSYVFSYDRMLDTRGNTAVYLQFAHARLASILRKAQDELNVDLDAL---RXXXXXXXXXXXXXXXXXXXXXXFSDVIEACLSDLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQYSRLLLCDATGVTMRTCFSLLGMKALDRI 176
            AGK   + +    +AA +GYGAVKYFDL QHP T+Y+FSYD+ML T GNTAVYL FA+ARLASI+RKA+DE + D+ A                           FSDV+    +D  P RLC+YLY LATK T+FVT C+VLG   QY RLLLC ATG+ MR CF+LLG+K LDRI
Sbjct:  629 AGKCPLSSDEVQQAAAIIGYGAVKYFDLHQHPETNYIFSYDKMLSTSGNTAVYLLFAYARLASIIRKAKDEHHTDIVATLLNNQQPTPLNLQHAKERALAFELTQFSDVVVTVATDYIPARLCDYLYKLATKLTEFVTECKVLGDPRQYHRLLLCHATGIIMRQCFALLGIKPLDRI 805

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BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot
Match: A0A7S2XZ92_9STRA (Arginine--tRNA ligase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ92_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.260e-47
Identity = 90/154 (58.44%), Postives = 106/154 (68.83%), Query Frame = 0

Query:    4 GKVTTTPEAAAVSAAEMGYGAVKYFDLRQHPTTSYVFSYDRMLDTRGNTAVYLQFAHARLASILRKAQDELNVDLDAL-RXXXXXXXXXXXXXXXXXXXXXXFSDVIEACLSDLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQYSRLLLCDA 156
            GK    P+  A +A+ +GYGA+KYFDL+QHP T+YVFSYDRMLDTRGNTAVYL FAHARLASILRKA +E  VDL  L                        F DV+E+ + +L P+RLCEYLY LATKFT+FVTNC+VL S E  SRLLLC+A
Sbjct:  291 GKCLLQPQEIAQAASALGYGAIKYFDLQQHPATAYVFSYDRMLDTRGNTAVYLLFAHARLASILRKAAEEKGVDLGPLVDRALETLHLAHPSERALAFEIMQFGDVVESTVQELMPSRLCEYLYNLATKFTEFVTNCKVLDSPEMNSRLLLCEA 444

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BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot
Match: A0A7S4N223_9STRA (Arginine--tRNA ligase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N223_9STRA)

HSP 1 Score: 158 bits (399), Expect = 1.620e-45
Identity = 84/174 (48.28%), Postives = 108/174 (62.07%), Query Frame = 0

Query:    4 GKVTTTPEAAAVSAAEMGYGAVKYFDLRQHPTTSYVFSYDRMLDTRGNTAVYLQFAHARLASILRKAQDELNVDLDAL-RXXXXXXXXXXXXXXXXXXXXXXFSDVIEACLSDLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQYSRLLLCDATGVTMRTCFSLLGMKALDRI 176
            G    T +    +A  MGYGAVKYFDLR++PTT+Y FSYD+MLDT+GNTA+YL +AHARL SI  KA+ + + D+D L +                      F+DV+E  L DL P  +C+YLY L+    DFVT CRV+GS E  SRLLLC AT + MR CF LL ++ + RI
Sbjct:   49 GTANITSDEVHETACAMGYGAVKYFDLRRNPTTNYKFSYDQMLDTKGNTAIYLLYAHARLESICAKAKVQHDKDVDELIKSGKAQISIVHPSERKLAMTLRMFADVVEETLDDLYPYHICDYLYALSGAVADFVTQCRVMGSPEMESRLLLCRATAIVMRQCFDLLAIRHVMRI 222

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BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot
Match: H3HAC8_PHYRM (Arginine--tRNA ligase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HAC8_PHYRM)

HSP 1 Score: 157 bits (396), Expect = 9.090e-45
Identity = 89/176 (50.57%), Postives = 112/176 (63.64%), Query Frame = 0

Query:    1 MDAGKVTTTPEAAAVSAAEMGYGAVKYFDLRQHPTTSYVFSYDRMLDTRGNTAVYLQFAHARLASILRKAQDELNVDLDALRXXXXXXXXXXXXXXXXXXXXXXFSDVIEACLSDLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQYSRLLLCDATGVTMRTCFSLLGMKALDRI 176
            ++AG+ +   E    +A ++GYGAVKYFDLRQ PT++Y+FS+DRML T G+TAVYL FA+ARL+SI+RK+     VD+ AL                         DVI     DL  NRLC YLYT++ K   F T CRVLGS+EQ SRLLLCDAT   M+TCFSLLG+  LD+I
Sbjct:   79 IEAGQTSLPIEEVDAAAEKLGYGAVKYFDLRQSPTSNYIFSFDRMLSTNGDTAVYLTFAYARLSSIIRKS----GVDMAALVEQQQKQGDVLKPEDPDGAGP----DVIVFINKDLNSNRLCSYLYTISEKVQTFATACRVLGSEEQSSRLLLCDATLKVMKTCFSLLGIDPLDQI 246

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BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot
Match: A0A7S3H4P3_9STRA (Arginine--tRNA ligase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4P3_9STRA)

HSP 1 Score: 166 bits (420), Expect = 2.240e-44
Identity = 90/161 (55.90%), Postives = 109/161 (67.70%), Query Frame = 0

Query:   20 MGYGAVKYFDLRQHPTTSYVFSYDRMLDTRGNTAVYLQFAHARLASILRKAQDELNVDLDALRXXXXXXXXXXXXXXXXXXXXXX-FSDVIEACLSDLGPNRLCEYLYTLATKFTDFVTNCRVLGSDE---QYSRLLLCDATGVTMRTCFSLLGMKALDRI 176
            +GYGAVKYFDL+Q+P ++YVFSYDRMLDT+G+TAVYL FA+ARLASILRKA+DE NVD+  L                          DVI++ L+DL PNRLC+YL TLA  FTDFVT C VL +D     +SRLLLC+AT   M  CF LLG+  L+RI
Sbjct:  760 IGYGAVKYFDLKQNPVSNYVFSYDRMLDTKGDTAVYLLFAYARLASILRKAKDERNVDMAPLHLQAQSLLSVAHPAERALAFELLQLGDVIKSVLADLLPNRLCDYLKTLAVAFTDFVTKCHVLNADNAEVMHSRLLLCEATRRVMAQCFQLLGIGTLERI 920

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BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot
Match: K0R2R2_THAOC (Arginine--tRNA ligase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R2R2_THAOC)

HSP 1 Score: 166 bits (419), Expect = 2.470e-44
Identity = 83/173 (47.98%), Postives = 113/173 (65.32%), Query Frame = 0

Query:    4 GKVTTTPEAAAVSAAEMGYGAVKYFDLRQHPTTSYVFSYDRMLDTRGNTAVYLQFAHARLASILRKAQDELNVDLDALRXXXXXXXXXXXXXXXXXXXXXXFSDVIEACLSDLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQYSRLLLCDATGVTMRTCFSLLGMKALDRI 176
            GK   T +    +A  MGYGAVKYFDLR++PT++Y+FSYDRMLDT+GNTA+YL +AHARL SI+ +A+ +  V++D L                       F+D IE  L DL P  +C+++Y L+   +DFVT C+VLG+DE  SR+LLC AT +TMR CF LLG++ + RI
Sbjct:  658 GKAGITKDQVHETACAMGYGAVKYFDLRRNPTSNYIFSYDRMLDTKGNTAIYLLYAHARLESIISRAEADHGVNVDELIKGGQAIVLGHKSERNLALHLEIFADCIEETLKDLYPYHICDFVYNLSIAASDFVTQCKVLGTDEMQSRVLLCRATAITMRQCFQLLGIRHVMRI 830

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BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot
Match: A0A812RTD8_SYMMI (Arginine--tRNA ligase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RTD8_SYMMI)

HSP 1 Score: 153 bits (387), Expect = 3.650e-44
Identity = 79/175 (45.14%), Postives = 112/175 (64.00%), Query Frame = 0

Query:    4 GKVTTTPEAAAVSAAEMGYGAVKYFDLRQHPTTSYVFSYDRMLDTRGNTAVYLQFAHARLASILRKAQDELNVD--LDALRXXXXXXXXXXXXXXXXXXXXXXFSDVIEACLSDLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQYSRLLLCDATGVTMRTCFSLLGMKALDRI 176
            GK + T +    ++ ++GYGAVKYFDL+Q+ TT+Y+F+YD+ML T G+TAVYL FA+AR+ASILRK +++ N D   +++                       F D I   + DL PNRLC+Y+  L+ KFT+FVT C VL SDE +SRL+LC+AT   +   F LLG++AL +I
Sbjct:   12 GKTSLTADEIVDASTKIGYGAVKYFDLKQNCTTNYIFNYDKMLSTNGDTAVYLLFAYARVASILRKGKEDRNFDPSSESMERLLATITVEHPAERQLAFELLQFGDCIRVAVKDLMPNRLCDYIKELSVKFTEFVTKCHVLNSDECHSRLILCEATRRVLEKSFHLLGIEALQKI 186

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BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot
Match: B8CBA7_THAPS (Arginine--tRNA ligase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBA7_THAPS)

HSP 1 Score: 162 bits (409), Expect = 6.630e-44
Identity = 80/162 (49.38%), Postives = 110/162 (67.90%), Query Frame = 0

Query:   16 SAAEMGYGAVKYFDLRQHPTTSYVFSYDRMLDTRGNTAVYLQFAHARLASILRKAQDELNVDLDAL-RXXXXXXXXXXXXXXXXXXXXXXFSDVIEACLSDLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQYSRLLLCDATGVTMRTCFSLLGMKALDRI 176
            +A+ MGYGAVKYFDLR++PT++Y+FSYDRMLDT+GNTA+YL +AHARL SI+ K + E  VD+D L +                      F+D +E  L+DL P  +C+++Y L+   ++FVT C+VLGS E  SRLLLC AT ++MR CF LLG++ + RI
Sbjct:  392 TASAMGYGAVKYFDLRRNPTSNYIFSYDRMLDTKGNTAIYLLYAHARLESIISKGKAEFGVDVDELIKAGKAKIILAHKSERNLGLHLEFFADAVEETLNDLFPYHICDFVYALSNAASEFVTQCKVLGSPEMESRLLLCRATAISMRQCFDLLGIRHVYRI 553

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BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot
Match: F0XWA2_AURAN (Arginine--tRNA ligase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWA2_AURAN)

HSP 1 Score: 162 bits (410), Expect = 7.130e-44
Identity = 85/173 (49.13%), Postives = 106/173 (61.27%), Query Frame = 0

Query:    4 GKVTTTPEAAAVSAAEMGYGAVKYFDLRQHPTTSYVFSYDRMLDTRGNTAVYLQFAHARLASILRKAQDELNVDLDALRXXXXXXXXXXXXXXXXXXXXXXFSDVIEACLSDLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQYSRLLLCDATGVTMRTCFSLLGMKALDRI 176
            GK    P     +AA +GYGAVKYFDL QHP+T+Y FSYD+ML T GNTAVYL FAHARLASI+ KA++   VD  A                        F++V+ +   D  P R+C+YLY +ATKFT+FVT C+VL       RL+LC+ATGV MR CF LLG+  L +I
Sbjct:  412 GKCALPPAEVKRAAAAIGYGAVKYFDLHQHPSTNYKFSYDKMLSTSGNTAVYLLFAHARLASIVAKARETRKVDAKAAAAGAALVLTQHAKERALAFELTQFAEVVLSVADDFLPVRICDYLYKIATKFTEFVTECKVLDDPRMAERLVLCEATGVVMRKCFDLLGITYLMQI 584

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot

BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FW72_ECTSI	3.340e-81	77.84	Arginine--tRNA ligase n=2 Tax=Ectocarpus TaxID=287...	[more]
A0A7S3NN71_9STRA	8.280e-49	53.67	Arginine--tRNA ligase n=1 Tax=Aureoumbra lagunensi...	[more]
A0A7S2XZ92_9STRA	1.260e-47	58.44	Arginine--tRNA ligase (Fragment) n=1 Tax=Fibrocaps...	[more]
A0A7S4N223_9STRA	1.620e-45	48.28	Arginine--tRNA ligase n=1 Tax=Odontella aurita Tax...	[more]
H3HAC8_PHYRM	9.090e-45	50.57	Arginine--tRNA ligase n=1 Tax=Phytophthora ramorum...	[more]
A0A7S3H4P3_9STRA	2.240e-44	55.90	Arginine--tRNA ligase n=1 Tax=Spumella elongata Ta...	[more]
K0R2R2_THAOC	2.470e-44	47.98	Arginine--tRNA ligase n=1 Tax=Thalassiosira oceani...	[more]
A0A812RTD8_SYMMI	3.650e-44	45.14	Arginine--tRNA ligase n=1 Tax=Symbiodinium microad...	[more]
B8CBA7_THAPS	6.630e-44	49.38	Arginine--tRNA ligase n=1 Tax=Thalassiosira pseudo...	[more]
F0XWA2_AURAN	7.130e-44	49.13	Arginine--tRNA ligase (Fragment) n=1 Tax=Aureococc...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008909	DALR anticodon binding	SMART	SM00836	dalr_1_4	coord: 56..176 e-value: 1.5E-33 score: 127.5
IPR008909	DALR anticodon binding	PFAM	PF05746	DALR_1	coord: 56..176 e-value: 1.4E-28 score: 99.4
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	GENE3D	3.40.50.620		coord: 2..54 e-value: 2.8E-13 score: 51.9
None	No IPR available	GENE3D	1.10.730.10		coord: 55..176 e-value: 3.8E-30 score: 106.4
None	No IPR available	PANTHER	PTHR11956:SF5	ARGININE--TRNA LIGASE, CYTOPLASMIC	coord: 7..176
None	No IPR available	SUPERFAMILY	52374	Nucleotidylyl transferase	coord: 9..47
IPR001278	Arginine-tRNA ligase	PANTHER	PTHR11956	ARGINYL-TRNA SYNTHETASE	coord: 7..176
IPR009080	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	SUPERFAMILY	47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	coord: 50..176

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig108759	contig	H-elongata_contig108759:25..1285 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig108759.712.1	mRNA_H-elongata_contig108759.712.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig108759 2..1896 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig108759.712.1 ID=prot_H-elongata_contig108759.712.1|Name=mRNA_H-elongata_contig108759.712.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp
MDAGKVTTTPEAAAVSAAEMGYGAVKYFDLRQHPTTSYVFSYDRMLDTRG
NTAVYLQFAHARLASILRKAQDELNVDLDALRASSDQVLVEHDAERALAF
ELLVFSDVIEACLSDLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQYSR
LLLCDATGVTMRTCFSLLGMKALDRI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008909	DALR_anticod-bd
IPR014729	Rossmann-like_a/b/a_fold
IPR001278	Arg-tRNA-ligase
IPR009080	tRNAsynth_Ia_anticodon-bd