mRNA_H-elongata_contig10856.699.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10856.699.1
Unique NamemRNA_H-elongata_contig10856.699.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10856.699.1 vs. uniprot
Match: D7FR29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR29_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 3.280e-45
Identity = 68/95 (71.58%), Postives = 80/95 (84.21%), Query Frame = 1 
Query:    1 ELDWIASGTWPLPWLPRFIVRGKSVVDIGPNGKVVRISDAWDGNLVSLALKHLVPGFWDIWHQLCSPPAEKMPYKVLKRAWNYEIREYAPRLVYQ 285
             L+W+ASGTWPLPWLPRFIV+G S +  GP+GKVV+I+D W+GN V+L LKHLVPGFWDIWHQL SPPAEK PY+V+KRA  Y IREYAPR+  Q
Sbjct:   58 RLEWVASGTWPLPWLPRFIVKGASTLQTGPDGKVVKITDTWEGNPVTLGLKHLVPGFWDIWHQLGSPPAEKPPYRVVKRALGYVIREYAPRMATQ 152
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BLAST of mRNA_H-elongata_contig10856.699.1 vs. uniprot
Match: A0A6H5L2A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A9_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 5.020e-44
Identity = 70/95 (73.68%), Postives = 80/95 (84.21%), Query Frame = 1 
Query:    1 ELDWIASGTWPLPWLPRFIVRGKSVVDIGPNGKVVRISDAWDGNLVSLALKHLVPGFWDIWHQLCSPPAEKMPYKVLKRAWNYEIREYAPRLVYQ 285
             L+WIASGTWPLPWLPRFIV+G S +  GP+GKVV+I+D W+GN V+L LKHLVPGFWDIWHQL SPPAEK PY+V+KRA  Y IREYAPRL  Q
Sbjct:  231 RLEWIASGTWPLPWLPRFIVKGASKLQTGPDGKVVKITDTWEGNPVTLGLKHLVPGFWDIWHQLGSPPAEKPPYRVVKRALGYVIREYAPRLATQ 325
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BLAST of mRNA_H-elongata_contig10856.699.1 vs. uniprot
Match: A0A835YSS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSS2_9STRA)

HSP 1 Score: 116 bits (290), Expect = 5.320e-29
Identity = 45/94 (47.87%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:    1 ELDWIASGTWPLPWLPRFIVRGKSVVDI-GPNGKVVRISDAWDGNLVSLALKHLVPGFWDIWHQLCSPPAEKMPYKVLKRAWNYEIREYAPRLV 279
             L+W+AS TWPLPW PR +++G+++V +    G+++ + D W+   V   ++HL+PGFWDIW+Q CSP AE+ P+KVL+R   YE+ ++APRLV
Sbjct:   98 SLEWLASATWPLPWTPRIVIQGRTLVRLDSAGGRIISMEDTWEEAPVQALIRHLLPGFWDIWNQFCSPIAERYPHKVLRRGRGYEVWQFAPRLV 191
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BLAST of mRNA_H-elongata_contig10856.699.1 vs. uniprot
Match: A0A8J5XYQ7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XYQ7_DIALT)

HSP 1 Score: 77.4 bits (189), Expect = 1.270e-14
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:    1 ELDWIASGTWPLPWLPRFIVRGKSVVDIG--PNGKV--VRISDAWDGNLVSLALKHLVPGFWDIWHQLCSPPAEKMPYKVLKRAWNYEIREYAP 270
             ++W+ASGTWPLPW PR +  G S +++   P G V  VR++D    + V + +  L+P + D++    SPPAE  PY+V++ A  YE+R   P
Sbjct:  128 RVEWLASGTWPLPWRPRALALGSSALELETLPTGAVHVVRVTDTLQTSPVDVLVSQLLPNWEDVYSLYNSPPAELRPYRVVRAARTYELRWMPP 221
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BLAST of mRNA_H-elongata_contig10856.699.1 vs. uniprot
Match: A0A834X5I8_9FABA (SOUL heme-binding family protein n=1 Tax=Senna tora TaxID=362788 RepID=A0A834X5I8_9FABA)

HSP 1 Score: 58.2 bits (139), Expect = 8.300e-8
Identity = 33/86 (38.37%), Postives = 45/86 (52.33%), Query Frame = 1 
Query:   34 LPWLPRFIVRGKSVVDIGP-NGKVVRISDAWDGNLVSLALKHLVPGFWDIWHQLC---SPPAEKMPYKVLKRAWNYEIREYAPRLV 279
            +PW P  +  G SV+ I P NGK     D WD   +         G WD++ QL    +P  E   Y++LKRA NYE+R+Y P +V
Sbjct:  160 VPWKPELVFTGTSVMGINPENGKFCSHVDFWDS--IKKNEYFSFEGLWDVFKQLRIYKTPDLESPKYQILKRAANYEVRQYDPFIV 243
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10856.699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FR29_ECTSI3.280e-4571.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2A9_9PHAE5.020e-4473.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YSS2_9STRA5.320e-2947.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J5XYQ7_DIALT1.270e-1439.36Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A834X5I8_9FABA8.300e-838.37SOUL heme-binding family protein n=1 Tax=Senna tor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10856contigH-elongata_contig10856:7562..8702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.5
Seed ortholog evalue8e-37
Seed eggNOG ortholog2880.D7FR29
EggNOG OGs2C5V8@1,2SB4P@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929614.1032884-CDS-H-elongata_contig10856:7561..76601622929614.1032884-CDS-H-elongata_contig10856:7561..7660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10856 7562..7660 +
1691679091.6976216-CDS-H-elongata_contig10856:7561..76601691679091.6976216-CDS-H-elongata_contig10856:7561..7660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10856 7562..7660 +
1622929614.118456-CDS-H-elongata_contig10856:8516..87021622929614.118456-CDS-H-elongata_contig10856:8516..8702Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10856 8517..8702 +
1691679091.7161562-CDS-H-elongata_contig10856:8516..87021691679091.7161562-CDS-H-elongata_contig10856:8516..8702Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10856 8517..8702 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10856.699.1prot_H-elongata_contig10856.699.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10856 7562..8702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10856.699.1

>prot_H-elongata_contig10856.699.1 ID=prot_H-elongata_contig10856.699.1|Name=mRNA_H-elongata_contig10856.699.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
ELDWIASGTWPLPWLPRFIVRGKSVVDIGPNGKVVRISDAWDGNLVSLAL
KHLVPGFWDIWHQLCSPPAEKMPYKVLKRAWNYEIREYAPRLVYQ
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mRNA from alignment at H-elongata_contig10856:7562..8702+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10856.699.1 ID=mRNA_H-elongata_contig10856.699.1|Name=mRNA_H-elongata_contig10856.699.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1141bp|location=Sequence derived from alignment at H-elongata_contig10856:7562..8702+ (Himanthalia elongata Himel1 dioecious)
GAGCTGGATTGGATCGCGAGCGGGACGTGGCCGCTGCCGTGGTTGCCGAG
GTTCATCGTTCGTGGGAAGTCCGTCGTTGATATCGGACCGAACGGCAAGG
TACATTCATCCTCTTTTTCATATCCGTACAAGCTTCTATATCAATTTACA
TATTTCTCTCTCTGCACGTGTTAATCTCTCTCTCTCTCTCTTTTCCGCCT
CTCACTCGTAGGAGTGCATCAAGTTGACTTTGGCTCTTTTGATGTTTTCG
TGACTATTAATACTAAATAGTCTATCAGTAGTCATGTAAATACTGAGCTC
CAAAACGTTACATGCATGTAGTTTTATCTCTGTGAAACCGATTAGGGGGA
ACGCTAGGAGTAGTTGTACCTGATAAGAATATAATATCACCATCATCGTG
TGAATACTCGCACTATAAAGTATTGAAGCCTGTGGTGGCCACGGCAGGTT
ACGTGAAAGCGCACCCAGTTGATGAACGCTCCTCCCAATCCTTATTTTTA
AACAACACACAGGCCAGGCAGTACGCACCGGCGGTGTAAGTGACGCCACT
ATAAGTGTAATCGCCCACTATATTTTCCGATACGACGCGTTTGCGTTTGC
TGTCTGTGGAGTTGTGGAGAAAATAGGAAGATAAGATTCATCCCCGGGGA
TCTACCCCCATTTATTCCCCTTGCAGTTTCGCTCGCATGGGTGGTCGATG
AGCGCGGCCCGTCGAGAAAACCATACATAGGGTTTGGAGATTATCGACGT
ATGTACCCGCGCTTCGTCCGCTTTGTACGCTTTAATCGCCAGGACGGGTC
GGCGGAGCTAAACCCAGCGGTACCGTCCCGGGACGCGATGCACACGATCA
CCCGCTAATATTTTTGGTGTCGTTCGTGCCTCTTGCATCTAGCGCTGACA
CGGGAAATCATTGCACTCGTGCGACACACCGCTACACTCCTCCTGATCCT
CAAAGGTTGTCCGAATCTCCGACGCGTGGGACGGAAATCTGGTCAGCCTT
GCGCTAAAGCACTTGGTGCCCGGGTTCTGGGATATATGGCACCAGCTTTG
CTCACCCCCAGCGGAGAAGATGCCTTACAAAGTGCTGAAAAGGGCATGGA
ATTACGAGATACGGGAGTATGCCCCACGCCTCGTTTACCAG
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Coding sequence (CDS) from alignment at H-elongata_contig10856:7562..8702+

>mRNA_H-elongata_contig10856.699.1 ID=mRNA_H-elongata_contig10856.699.1|Name=mRNA_H-elongata_contig10856.699.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig10856:7562..8702+ (Himanthalia elongata Himel1 dioecious)
GAGCTGGATTGGATCGCGAGCGGGACGTGGCCGCTGCCGTGGTTGCCGAG
GTTCATCGTTCGTGGGAAGTCCGTCGTTGATATCGGACCGAACGGCAAGG
AGCTGGATTGGATCGCGAGCGGGACGTGGCCGCTGCCGTGGTTGCCGAGG
TTCATCGTTCGTGGGAAGTCCGTCGTTGATATCGGACCGAACGGCAAGGT
TGTCCGAATCTCCGACGCGTGGGACGGAAATCTGGTCAGCCTTGCGCTAA
AGCACTTGGTGCCCGGGTTCTGGGATATATGGCACCAGCTTTGCTCACCC
CCAGCGGAGAAGATGCCTTACAAAGTGCTGAAAAGGGCATGGAATTACGA
GATACGGGAGTATGCCCCACGCCTCGTTTACCAGGTTGTCCGAATCTCCG
ACGCGTGGGACGGAAATCTGGTCAGCCTTGCGCTAAAGCACTTGGTGCCC
GGGTTCTGGGATATATGGCACCAGCTTTGCTCACCCCCAGCGGAGAAGAT
GCCTTACAAAGTGCTGAAAAGGGCATGGAATTACGAGATACGGGAGTATG
CCCCACGCCTCGTTTACCAG
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