mRNA_H-elongata_contig108376.683.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig108376.683.1 vs. uniprot
Match: D7FN88_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN88_ECTSI) HSP 1 Score: 230 bits (587), Expect = 1.510e-66 Identity = 118/183 (64.48%), Postives = 132/183 (72.13%), Query Frame = 1
Query: 1 YVQAILSFSGVYFDASVFRVLRLFRVLQLEHFVSAFTLLDDVWFSCKDTLAATGLLALVVWVGSACLFYLFEKVWHELSRSISNLSRVHIYLAPTSAVSSKHAPNIYFDNECTDAAFSSIPDAMYYVAIFLGGEWSKVDFTWPGKILCCVLCVMGIALFAIPVGTVFEAFQDVLQEVNASDDE 549
Y++ IL +GVYFDASVFRVLRLFR+LQLEHFVSAF+LLDDVW + KDTLAATGLLALVVWVGSA LFYLFEK DN CT AFSSIPDAM+Y A+FLGGEWS++DFTW GK+LCCVLCV GI LF IPVGTVFEAFQDV+QEVN ++E
Sbjct: 1036 YIETILWSAGVYFDASVFRVLRLFRILQLEHFVSAFSLLDDVWTASKDTLAATGLLALVVWVGSAFLFYLFEK-----------------------------------DNMCTGEAFSSIPDAMFYTAVFLGGEWSEIDFTWAGKVLCCVLCVFGIVLFGIPVGTVFEAFQDVMQEVNEEEEE 1183
BLAST of mRNA_H-elongata_contig108376.683.1 vs. uniprot
Match: A0A836CDK7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK7_9STRA) HSP 1 Score: 171 bits (432), Expect = 1.250e-45 Identity = 94/188 (50.00%), Postives = 111/188 (59.04%), Query Frame = 1
Query: 1 YVQAILSFSGVYFDASVFRVLRLFRVLQLEHFVSAFTLLDDVWFSCKDTLAATGLLALVVWVGSACLFYLFEKVWHELSRSISNLSRVHIYLAPTSAVSSKHAPNIYFDNECTDA--AFSSIPDAMYYVAIFLGGEWSKVDFTWPGKILCCVLCVMGIALFAIPVGTVFEAFQDVLQEVNASDDESLE 558
Y+Q IL +GV FDA FR+LRLFR+LQLE V+AFTLLDDVW K L A GLLA +VWVGSA LF+L E+ NEC AF IP +MYY IFLGGEW +DFT G+I+CC C+MGIALFAIPVGTVFE+F VL+E N+ D + E
Sbjct: 1044 YIQEILVSAGVVFDAGPFRILRLFRLLQLERHVNAFTLLDDVWRGAKGVLKAAGLLAFIVWVGSATLFFLTEQ-----------------------------------RNECEGVREAFVDIPSSMYYTGIFLGGEWGLIDFTGLGRIVCCFTCIMGIALFAIPVGTVFESFSGVLEEANSGDKKEAE 1196
BLAST of mRNA_H-elongata_contig108376.683.1 vs. uniprot
Match: A0A812X110_9DINO (Shal protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812X110_9DINO) HSP 1 Score: 163 bits (413), Expect = 4.790e-43 Identity = 83/186 (44.62%), Postives = 109/186 (58.60%), Query Frame = 1
Query: 1 YVQAILSFSGVYFDASVFRVLRLFRVLQLEHFVSAFTLLDDVWFSCKDTLAATGLLALVVWVGSACLFYLFEKVWHELSRSISNLSRVHIYLAPTSAVSSKHAPNIYFDNECTDAAFSSIPDAMYYVAIFLGGEWSKVDFTWPGKILCCVLCVMGIALFAIPVGTVFEAFQDVLQEVNASDDESLE 558
++Q ++ SG+ F+A VFR+ RL R+LQLE FV +FTLLDD W SC++T+ ATG +AL+VW+ A LFY FE+ DN D AF +P +MY+ IFLGGEW+ +DFT GKI+C V CV+GI L+ IP+G VFEAF DVL + DES E
Sbjct: 1703 WIQTVMWLSGLQFNAFVFRIARLLRILQLEDFVESFTLLDDAWRSCRETMVATGFMALLVWICGAVLFYEFEQ-----------------------------------DNPAMDGAFKDLPSSMYFTIIFLGGEWAMIDFTSGGKIVCLVYCVVGIGLYGIPIGAVFEAFSDVLADKEDEQDESAE 1853
BLAST of mRNA_H-elongata_contig108376.683.1 vs. uniprot
Match: A0A7S0XQ15_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XQ15_HEMAN) HSP 1 Score: 150 bits (378), Expect = 3.020e-42 Identity = 78/163 (47.85%), Postives = 100/163 (61.35%), Query Frame = 1
Query: 40 DASVFRVLRLFRVLQLEHFVSAFTLLDDVWFSCKDTLAATGLLALVVWVGSACLFYLFEKVWHELSRSISNLSRVHIYLAPTSAVSSKHAPNIYFDNECTDAAFSSIPDAMYYVAIFLGGEWSKVDFTWPGKILCCVLCVMGIALFAIPVGTVFEAFQDVLQE 528
D + RVLRLFR+LQLEHF AFTL+DDV+ CKDTL AT LA+++WVG+A F++ EK PN+ AF +IP++MYY AIFL GEW +VDFT PGK++CCVL V GI L++IPVG +F+AF +VL E
Sbjct: 66 DFAAIRVLRLFRILQLEHFTEAFTLIDDVFRQCKDTLVATSFLAVIIWVGAAYAFFVTEK----------------------------GNPNV-------GGAFDNIPNSMYYTAIFLSGEWGQVDFTLPGKVICCVLVVAGIGLYSIPVGALFDAFGEVLAE 193
BLAST of mRNA_H-elongata_contig108376.683.1 vs. uniprot
Match: A0A7S0YVY9_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YVY9_9CRYP) HSP 1 Score: 145 bits (367), Expect = 2.310e-41 Identity = 76/158 (48.10%), Postives = 97/158 (61.39%), Query Frame = 1
Query: 55 RVLRLFRVLQLEHFVSAFTLLDDVWFSCKDTLAATGLLALVVWVGSACLFYLFEKVWHELSRSISNLSRVHIYLAPTSAVSSKHAPNIYFDNECTDAAFSSIPDAMYYVAIFLGGEWSKVDFTWPGKILCCVLCVMGIALFAIPVGTVFEAFQDVLQE 528
RVLRL R+LQLEHF AFTL+DDV+ CKDTL AT LA+++WVG+A F+L E+ PN+ AF +IP++MYY AIFL GEW +VDFT PGK++CCVL V GI L++IPVG +F+AF +VL E
Sbjct: 13 RVLRLLRILQLEHFTEAFTLIDDVFRQCKDTLVATSFLAVIIWVGAAYAFFLTER----------------------------GNPNV-------GGAFDNIPNSMYYTAIFLSGEWGQVDFTLPGKVICCVLVVAGIGLYSIPVGALFDAFGEVLAE 135
BLAST of mRNA_H-elongata_contig108376.683.1 vs. uniprot
Match: A0A7S2YGV7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YGV7_9STRA) HSP 1 Score: 147 bits (372), Expect = 3.720e-41 Identity = 77/164 (46.95%), Postives = 104/164 (63.41%), Query Frame = 1
Query: 40 DASVFRVLRLFRVLQLEHFVSAFTLLDDVWFSCKDTLAATGLLALVVWVGSACLFYLFEKV---WHELSRSISNLSRVHIYLAPTSAVSSKHAPNIYFDNECTDAAFSSIPDAMYYVAIFLGGEWSKVDFTWPGKILCCVLCVMGIALFAIPVGTVFEAFQDVL 522
+A +FR LQLE FV AF+ LD+V+ + KD L ATGLLAL++WVG LFY+FE+ W E S+ L + S N Y+ C+ AF +P+A+YY A+FLGGEW VDFTWPG+++C LCV+GIAL+AIP+GT+F++F VL
Sbjct: 40 NARIFRXXXXXXXLQLEDFVVAFSKLDNVFRASKDVLKATGLLALIIWVGCGALFYIFEENNPNWRECDSSVP-LHTNDTGMPGCYDFKSTAECNEYYPGLCSQNAFIHMPNALYYTAVFLGGEWGVVDFTWPGRLVCLFLCVVGIALYAIPIGTLFDSFGAVL 202
BLAST of mRNA_H-elongata_contig108376.683.1 vs. uniprot
Match: A0A7S1DR60_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DR60_HEMAN) HSP 1 Score: 150 bits (378), Expect = 1.930e-39 Identity = 78/163 (47.85%), Postives = 100/163 (61.35%), Query Frame = 1
Query: 40 DASVFRVLRLFRVLQLEHFVSAFTLLDDVWFSCKDTLAATGLLALVVWVGSACLFYLFEKVWHELSRSISNLSRVHIYLAPTSAVSSKHAPNIYFDNECTDAAFSSIPDAMYYVAIFLGGEWSKVDFTWPGKILCCVLCVMGIALFAIPVGTVFEAFQDVLQE 528
D + RVLRLFR+LQLEHF AFTL+DDV+ CKDTL AT LA+++WVG+A F++ EK PN+ AF +IP++MYY AIFL GEW +VDFT PGK++CCVL V GI L++IPVG +F+AF +VL E
Sbjct: 362 DFAAIRVLRLFRILQLEHFTEAFTLIDDVFRQCKDTLVATSFLAVIIWVGAAYAFFVTEK----------------------------GNPNV-------GGAFDNIPNSMYYTAIFLSGEWGQVDFTLPGKVICCVLVVAGIGLYSIPVGALFDAFGEVLAE 489
BLAST of mRNA_H-elongata_contig108376.683.1 vs. uniprot
Match: A0A7S1GK10_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GK10_CYCTE) HSP 1 Score: 149 bits (377), Expect = 1.940e-38 Identity = 78/163 (47.85%), Postives = 106/163 (65.03%), Query Frame = 1
Query: 43 ASVFRVLRLFRVLQLEHFVSAFTLLDDVWFSCKDTLAATGLLALVVWVGSACLFYLFEKVWHELSRSISNLSRVHIYLAPTSAVSSKHAP---NIYFDNECTDAAFSSIPDAMYYVAIFLGGEWSKVDFTWPGKILCCVLCVMGIALFAIPVGTVFEAFQDVL 522
A +FRV R+FR+LQLE F+ AF+ LD+V+ + D L ATGLLALV+WVG LFY+FE+ + RS + H + T H N + C AF++IP+++YY A+FLGGEW VDFTWPG+ +C LCV GI L+AIP+GT+F++F VL
Sbjct: 536 AMMFRVFRIFRLLQLEGFIVAFSKLDNVFRASMDVLKATGLLALVIWVGCGSLFYIFEQN-NPNFRSCDDSIPTHSTDSSTPGCFDFHTTEECNDVYPGMCKQVAFTNIPNSLYYTAVFLGGEWGLVDFTWPGRFVCLFLCVAGIGLYAIPLGTLFDSFGAVL 697
BLAST of mRNA_H-elongata_contig108376.683.1 vs. uniprot
Match: A0A7S0FUX1_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FUX1_9DINO) HSP 1 Score: 135 bits (341), Expect = 6.190e-37 Identity = 74/171 (43.27%), Postives = 94/171 (54.97%), Query Frame = 1
Query: 1 YVQAILSFSGVYFDASVFRVLRLFRVLQLEHFVSAFTLLDDVWFSCKDTLAATGLLALVVWVGSACLFYLFEKVWHELSRSISNLSRVHIYLAPTSAVSSKHAPNIYFDNECTDAAFSSIPDAMYYVAIFLGGEWSKVDFTWPGKILCCVLCVMGIALFAIPVGTVFEAFQ 513
++Q LS G+ + +FRV+ RVLQLE FV AFTLLDD W C+DT+ + LLAL++W+ A LFY E NE A SIP A++Y AIFLGGEW+ VDFT GK+LC C +GIA+FAIPVG+ FEAF+
Sbjct: 42 WLQMALSLVGIQTNFFIFRVVPCLRVLQLEEFVQAFTLLDDAWAMCRDTIKTSALLALIIWLLGAVLFYELEN-----------------------------------GNEALGGALDSIPSALHYTAIFLGGEWALVDFTPLGKLLCVFYCFLGIAIFAIPVGSFFEAFE 177
BLAST of mRNA_H-elongata_contig108376.683.1 vs. uniprot
Match: A0A7S1VPC1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VPC1_9STRA) HSP 1 Score: 145 bits (367), Expect = 6.730e-37 Identity = 78/185 (42.16%), Postives = 113/185 (61.08%), Query Frame = 1
Query: 1 YVQAILSFSGVYFDAS----VFRVLRLFRVLQLEHFVSAFTLLDDVWFSCKDTLAATGLLALVVWVGSACLFYLFEKV---WHELSRSISNLSR----VHIYLAPTSAVSSKHAPNIYFDNECTDAAFSSIPDAMYYVAIFLGGEWSKVDFTWPGKILCCVLCVMGIALFAIPVGTVFEAFQDVL 522
+++ L SGV + VFRV LQLE FV AF++LD+V+ + KD ATGLLA+++WVG A LFY+FE+ W S+ + Y P+++ A N +D C AF++IP+A+Y+ A+FLGGEW +DFTWPG+ +C LCV GI L+AIP+GT+F++F +L
Sbjct: 1075 FIEQALIHSGVISEGGDSVMVFRVXXXXXXLQLEDFVVAFSMLDNVFRASKDVFKATGLLAVIIWVGCAALFYIFEENNPNWRSCDSSVPAHTEDPDFPGCYDFPSTS-----ACNEVYDGLCEQKAFTNIPNALYFTAVFLGGEWGVIDFTWPGRFVCLFLCVAGIGLYAIPIGTLFDSFGAIL 1254 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108376.683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig108376.683.1 >prot_H-elongata_contig108376.683.1 ID=prot_H-elongata_contig108376.683.1|Name=mRNA_H-elongata_contig108376.683.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp YVQAILSFSGVYFDASVFRVLRLFRVLQLEHFVSAFTLLDDVWFSCKDTLback to top mRNA from alignment at H-elongata_contig108376:903..2047- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig108376.683.1 ID=mRNA_H-elongata_contig108376.683.1|Name=mRNA_H-elongata_contig108376.683.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1145bp|location=Sequence derived from alignment at H-elongata_contig108376:903..2047- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig108376:903..2047- >mRNA_H-elongata_contig108376.683.1 ID=mRNA_H-elongata_contig108376.683.1|Name=mRNA_H-elongata_contig108376.683.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig108376:903..2047- (Himanthalia elongata Himel1 dioecious)back to top |