mRNA_H-elongata_contig107779.640.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107779.640.1
Unique NamemRNA_H-elongata_contig107779.640.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig107779.640.1 vs. uniprot
Match: D8LM84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM84_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 3.540e-35
Identity = 72/111 (64.86%), Postives = 90/111 (81.08%), Query Frame = 1
Query:  148 LERVLHRLVVTEDAKLVPVLDKLLPKLLRKLN-DTPAVRGKVIDILSHISKRVRPNASITLPCAELLQVCRDVPPTSFAFNFSLTFLDIALRRARPSEKGTVAEQIARGIS 477
            L+RVLHRLV+ +D+KL PVLD LLPKL+RKLN  +P VR KVID+LSH+SKRVRPNASI LPC+ LL VC++VP  SFAFNFSL+FL++ + R  P+ +G +  QIA GIS
Sbjct:   12 LDRVLHRLVIADDSKLSPVLDILLPKLVRKLNGSSPRVRAKVIDVLSHVSKRVRPNASIELPCSGLLAVCKEVPLNSFAFNFSLSFLEMGVPRLTPTAQGKIGLQIASGIS 122          
BLAST of mRNA_H-elongata_contig107779.640.1 vs. uniprot
Match: A0A836CAR0_9STRA (Proteasome stabiliser-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAR0_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.210e-20
Identity = 58/113 (51.33%), Postives = 74/113 (65.49%), Query Frame = 1
Query:  148 LERVLHRLVVTEDAKLVPVLDKLLPKLLRKLN-DTPAVRGKVIDILSHISKRVRPNASITLPCAELLQVCRDVP--PTSFAFNFSLTFLDIALRRARPSEKGTVAEQIARGIS 477
            LER+L RLV T D KL  VL+KLLPKL+ KL+  TP VR KVI++L+HIS+RV+    I LPC ELL  C         FA NF++ FL++AL R  P+EK  VA  +  G+S
Sbjct:   11 LERILFRLVQTPDDKLAGVLEKLLPKLVAKLDTSTPPVRLKVIEVLNHISRRVKHEPGIRLPCGELLAACETGGGGAAGFASNFAMVFLNMALPRCAPAEKQAVAVGLMHGLS 123          
BLAST of mRNA_H-elongata_contig107779.640.1 vs. uniprot
Match: A0A314XJS5_PRUYE (Proteasome-associated protein ECM29 homolog isoform X3 n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314XJS5_PRUYE)

HSP 1 Score: 84.7 bits (208), Expect = 3.370e-16
Identity = 48/131 (36.64%), Postives = 80/131 (61.07%), Query Frame = 1
Query:   88 LMEAAPGSEAANTDMEETVVLERVLHRLVVTEDAKLVPVLDKLLPKLLRKLN-DTPAVRGKVIDILSHISKRVRPNASITLPCAELLQVCRDVPPTSFAFNFSLTFLDIALRRARPSEKGTVAEQIARGIS 477
            + E +  S A  +D E+  +L+R+L RL + +D+KL P+L KLLP  +  L+ ++ AVR KV++ILSH++KRV+    I LP +EL  +  +    S   NF + ++++A+ RA   EK  +A  +  G+S
Sbjct:    1 MAETSSSSSATKSDEEKVEMLDRLLTRLALCDDSKLQPLLSKLLPFTVSSLSSNSSAVRNKVLEILSHVNKRVKHQPEIALPLSELWNIYSEANAASMVRNFCILYIEMAMDRADTKEKENLAATLLSGVS 131          
BLAST of mRNA_H-elongata_contig107779.640.1 vs. uniprot
Match: A0A5J9UT87_9POAL (Uncharacterized protein n=2 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9UT87_9POAL)

HSP 1 Score: 84.3 bits (207), Expect = 5.820e-16
Identity = 48/127 (37.80%), Postives = 77/127 (60.63%), Query Frame = 1
Query:  100 APGSEAANTDMEETVVLERVLHRLVVTEDAKLVPVLDKLLPKLLRKL-NDTPAVRGKVIDILSHISKRVRPNASITLPCAELLQVCRDVPPTSFAFNFSLTFLDIALRRARPSEKGTVAEQIARGIS 477
            AP + AA TD E    L+R+L RL + +DA+L P+L ++LP  +  L + +PAVR  V+DILSHI+KRV+    I LP  +L ++  +   ++   NF + ++++A  R    EKG++A  +   IS
Sbjct:    7 APAAAAAQTDAEREEALDRILTRLALADDARLAPLLARVLPYAITSLASPSPAVRKLVMDILSHINKRVKHRPDIQLPMLDLWKIYTESVSSAMVRNFCVVYIEMAFERLPTEEKGSIAPDLLVNIS 133          
BLAST of mRNA_H-elongata_contig107779.640.1 vs. uniprot
Match: A0A314V2B5_PRUYE (Proteasome-associated protein ECM29 homolog isoform X2 n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314V2B5_PRUYE)

HSP 1 Score: 84.0 bits (206), Expect = 7.800e-16
Identity = 48/131 (36.64%), Postives = 80/131 (61.07%), Query Frame = 1
Query:   88 LMEAAPGSEAANTDMEETVVLERVLHRLVVTEDAKLVPVLDKLLPKLLRKLN-DTPAVRGKVIDILSHISKRVRPNASITLPCAELLQVCRDVPPTSFAFNFSLTFLDIALRRARPSEKGTVAEQIARGIS 477
            + E +  S +  +D E+  +L+R+L RL + +D+KL P+L KLLP  +  L+ ++ AVR KV++ILSH++KRV+    I LP +EL  +  +    S   NF + ++++A+ RA   EK  +A  +  GIS
Sbjct:    1 MAETSSSSSSTKSDEEKVEMLDRLLTRLALCDDSKLQPLLSKLLPFTVSSLSSNSSAVRNKVLEILSHVNKRVKHQPEIALPLSELWNIYSEANAASMVRNFCILYIEMAMDRADTKEKENLAATLLSGIS 131          
BLAST of mRNA_H-elongata_contig107779.640.1 vs. uniprot
Match: M5WYU0_PRUPE (Uncharacterized protein n=16 Tax=Prunus TaxID=3754 RepID=M5WYU0_PRUPE)

HSP 1 Score: 83.6 bits (205), Expect = 1.080e-15
Identity = 47/131 (35.88%), Postives = 80/131 (61.07%), Query Frame = 1
Query:   88 LMEAAPGSEAANTDMEETVVLERVLHRLVVTEDAKLVPVLDKLLPKLLRKLN-DTPAVRGKVIDILSHISKRVRPNASITLPCAELLQVCRDVPPTSFAFNFSLTFLDIALRRARPSEKGTVAEQIARGIS 477
            + E +  S +  +D E+  +L+R+L RL + +D+KL P+L KLLP  +  L+ ++ AVR KV++ILSH++KRV+    I LP +EL  +  +    S   NF + ++++A+ RA   EK  +A  +  G+S
Sbjct:    1 MAETSSSSSSTKSDEEKVEMLDRLLTRLALCDDSKLQPLLSKLLPFTVSSLSSNSSAVRNKVLEILSHVNKRVKHQPEIALPLSELWNIYSEANAASMVRNFCILYIEMAMDRADTKEKENLAATLLSGVS 131          
BLAST of mRNA_H-elongata_contig107779.640.1 vs. uniprot
Match: A0A835LMC4_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LMC4_9MAGN)

HSP 1 Score: 82.4 bits (202), Expect = 2.730e-15
Identity = 46/118 (38.98%), Postives = 73/118 (61.86%), Query Frame = 1
Query:  127 DMEETVVLERVLHRLVVTEDAKLVPVLDKLLPKLLRKLNDTPA-VRGKVIDILSHISKRVRPNASITLPCAELLQVCRDVPPTSFAFNFSLTFLDIALRRARPSEKGTVAEQIARGIS 477
            D+E+  +L+R+L RL +T+D+KL P+L KLLP  +  L+ T   VR KV++ILSH++KRV+ N  I LP  EL ++  D    S   NF + ++++A  R    EK  +A ++   +S
Sbjct:   15 DVEKEEILDRMLTRLALTDDSKLEPLLTKLLPYTISSLSSTSTDVRKKVMEILSHVNKRVKHNLEIGLPLLELWKIYIDANTASMVKNFCIIYIEMAFERISTEEKTNMAPELVANVS 132          
BLAST of mRNA_H-elongata_contig107779.640.1 vs. uniprot
Match: B9G9B1_ORYSJ (Uncharacterized protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=B9G9B1_ORYSJ)

HSP 1 Score: 78.2 bits (191), Expect = 4.780e-15
Identity = 45/131 (34.35%), Postives = 78/131 (59.54%), Query Frame = 1
Query:   88 LMEAAPGSEAANTDMEETVVLERVLHRLVVTEDAKLVPVLDKLLPKLLRKL-NDTPAVRGKVIDILSHISKRVRPNASITLPCAELLQVCRDVPPTSFAFNFSLTFLDIALRRARPSEKGTVAEQIARGIS 477
            + E +  + AA TD E    L+R+L RL + EDA+L P+L ++LP  +  L + T +VR  V++ILSHI+KRV+    I+LP  +L ++  +   ++   NF + ++++A  R    +KG++A  +   IS
Sbjct:    1 MAETSSAAAAAQTDAEREEALDRMLTRLALAEDARLAPLLARVLPYAITSLASATASVRKLVMEILSHINKRVKHRPEISLPMLDLWRIYTESTSSTIVRNFCIVYIEMAFERLLSEDKGSIAPDLLINIS 131          
BLAST of mRNA_H-elongata_contig107779.640.1 vs. uniprot
Match: A0A1B6PPT9_SORBI (Uncharacterized protein n=6 Tax=Andropogoneae TaxID=147429 RepID=A0A1B6PPT9_SORBI)

HSP 1 Score: 81.6 bits (200), Expect = 5.060e-15
Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 1
Query:   97 AAPGSEAANTDMEETVVLERVLHRLVVTEDAKLVPVLDKLLPKLLRKL-NDTPAVRGKVIDILSHISKRVRPNASITLPCAELLQVCRDVPPTSFAFNFSLTFLDIALRRARPSEKGTVAEQIARGIS 477
            AAP + A  TD E    L+R+L RL + +DA+L PVL ++LP  +  L +  PAVR  V++ILSHI+KRV+    I LP  EL ++  +   ++   NF + ++++A  R    EKG +A  +   IS
Sbjct:   11 AAPAAAAELTDAERMDALDRMLTRLALADDARLAPVLARVLPYAVTSLASPAPAVRKLVMEILSHINKRVKHRPEIPLPMLELWKIYTESTSSTMVRNFCIVYIEMAFERLPTEEKGNIAPDLLINIS 138          
BLAST of mRNA_H-elongata_contig107779.640.1 vs. uniprot
Match: A0A833U7C9_JUGRE (Uncharacterized protein n=1 Tax=Juglans regia TaxID=51240 RepID=A0A833U7C9_JUGRE)

HSP 1 Score: 75.9 bits (185), Expect = 1.790e-14
Identity = 44/121 (36.36%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  118 ANTDMEETVVLERVLHRLVVTEDAKLVPVLDKLLPKLLRKLND-TPAVRGKVIDILSHISKRVRPNASITLPCAELLQVCRDVPPTSFAFNFSLTFLDIALRRARPSEKGTVAEQIARGIS 477
            A++D E   +L+R+L RL + +D+KL P+L KLLP  +  L+  +PAVR KV++ILSH++KRV+    I LP  EL ++  +        NF + ++++A  R    EK  +   +   IS
Sbjct:   15 ASSDSEREELLDRMLTRLALCDDSKLQPLLSKLLPLTISSLSSQSPAVRNKVLEILSHVNKRVKHQLEIGLPLLELWKLYSEANAAPMVRNFCIVYIEMAFERVHGKEKEDLVPLLVVNIS 135          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107779.640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM84_ECTSI3.540e-3564.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAR0_9STRA2.210e-2051.33Proteasome stabiliser-domain-containing protein n=... [more]
A0A314XJS5_PRUYE3.370e-1636.64Proteasome-associated protein ECM29 homolog isofor... [more]
A0A5J9UT87_9POAL5.820e-1637.80Uncharacterized protein n=2 Tax=Eragrostis curvula... [more]
A0A314V2B5_PRUYE7.800e-1636.64Proteasome-associated protein ECM29 homolog isofor... [more]
M5WYU0_PRUPE1.080e-1535.88Uncharacterized protein n=16 Tax=Prunus TaxID=3754... [more]
A0A835LMC4_9MAGN2.730e-1538.98Uncharacterized protein n=1 Tax=Coptis chinensis T... [more]
B9G9B1_ORYSJ4.780e-1534.35Uncharacterized protein n=1 Tax=Oryza sativa subsp... [more]
A0A1B6PPT9_SORBI5.060e-1538.28Uncharacterized protein n=6 Tax=Andropogoneae TaxI... [more]
A0A833U7C9_JUGRE1.790e-1436.36Uncharacterized protein n=1 Tax=Juglans regia TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107779contigH-elongata_contig107779:1753..2229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue9.9e-32
Seed eggNOG ortholog2880.D8LM84
KEGG koko:K11886
EggNOG free text desc.proteasome assembly
EggNOG OGsKOG0915@1,KOG0915@2759
Ec32 ortholog descriptionProteasome component ECM29/Translational activator GCN1
Ec32 orthologEc-01_005710.1
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03051
Hectar predicted targeting categoryother localisation
Exons1
Model size478
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929607.4123394-CDS-H-elongata_contig107779:1752..22291622929607.4123394-CDS-H-elongata_contig107779:1752..2229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107779 1753..2229 +
1691679089.3887973-CDS-H-elongata_contig107779:1752..22291691679089.3887973-CDS-H-elongata_contig107779:1752..2229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107779 1753..2229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107779.640.1prot_H-elongata_contig107779.640.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107779 1753..2229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107779.640.1

>prot_H-elongata_contig107779.640.1 ID=prot_H-elongata_contig107779.640.1|Name=mRNA_H-elongata_contig107779.640.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
TRHSRRHHAKTTRTFSSKPGFCVVTSSSALMEAAPGSEAANTDMEETVVL
ERVLHRLVVTEDAKLVPVLDKLLPKLLRKLNDTPAVRGKVIDILSHISKR
VRPNASITLPCAELLQVCRDVPPTSFAFNFSLTFLDIALRRARPSEKGTV
AEQIARGIS
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mRNA from alignment at H-elongata_contig107779:1753..2229+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107779.640.1 ID=mRNA_H-elongata_contig107779.640.1|Name=mRNA_H-elongata_contig107779.640.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=477bp|location=Sequence derived from alignment at H-elongata_contig107779:1753..2229+ (Himanthalia elongata Himel1 dioecious)
ACAAGGCATTCACGTCGACATCACGCTAAGACAACGAGGACATTTTCCTC CAAGCCAGGCTTCTGCGTAGTAACTTCGTCTTCAGCACTGATGGAAGCTG CTCCGGGTTCTGAAGCAGCGAATACAGATATGGAGGAGACGGTCGTACTC GAGCGAGTGCTCCACAGACTGGTCGTCACCGAGGACGCCAAACTGGTACC GGTGTTGGACAAGCTGCTGCCGAAGCTTCTCCGAAAACTTAACGACACCC CAGCTGTGCGGGGCAAGGTCATTGATATCCTTAGCCACATCAGTAAAAGA GTTCGGCCGAATGCCTCCATAACGCTGCCCTGCGCGGAGTTGCTGCAGGT GTGCAGAGACGTGCCGCCGACGTCATTCGCCTTCAACTTTAGTCTGACCT TTCTCGACATCGCGCTGCGACGAGCGCGGCCTTCAGAAAAGGGTACGGTC GCCGAGCAGATTGCGCGCGGCATATCC
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Coding sequence (CDS) from alignment at H-elongata_contig107779:1753..2229+

>mRNA_H-elongata_contig107779.640.1 ID=mRNA_H-elongata_contig107779.640.1|Name=mRNA_H-elongata_contig107779.640.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig107779:1753..2229+ (Himanthalia elongata Himel1 dioecious)
ACAAGGCATTCACGTCGACATCACGCTAAGACAACGAGGACATTTTCCTC
CAAGCCAGGCTTCTGCGTAGTAACTTCGTCTTCAGCACTGATGGAAGCTG
CTCCGGGTTCTGAAGCAGCGAATACAGATATGGAGGAGACGGTCGTACTC
GAGCGAGTGCTCCACAGACTGGTCGTCACCGAGGACGCCAAACTGGTACC
GGTGTTGGACAAGCTGCTGCCGAAGCTTCTCCGAAAACTTAACGACACCC
CAGCTGTGCGGGGCAAGGTCATTGATATCCTTAGCCACATCAGTAAAAGA
GTTCGGCCGAATGCCTCCATAACGCTGCCCTGCGCGGAGTTGCTGCAGGT
GTGCAGAGACGTGCCGCCGACGTCATTCGCCTTCAACTTTAGTCTGACCT
TTCTCGACATCGCGCTGCGACGAGCGCGGCCTTCAGAAAAGGGTACGGTC
GCCGAGCAGATTGCGCGCGGCATATCCACAAGGCATTCACGTCGACATCA
CGCTAAGACAACGAGGACATTTTCCTCCAAGCCAGGCTTCTGCGTAGTAA
CTTCGTCTTCAGCACTGATGGAAGCTGCTCCGGGTTCTGAAGCAGCGAAT
ACAGATATGGAGGAGACGGTCGTACTCGAGCGAGTGCTCCACAGACTGGT
CGTCACCGAGGACGCCAAACTGGTACCGGTGTTGGACAAGCTGCTGCCGA
AGCTTCTCCGAAAACTTAACGACACCCCAGCTGTGCGGGGCAAGGTCATT
GATATCCTTAGCCACATCAGTAAAAGAGTTCGGCCGAATGCCTCCATAAC
GCTGCCCTGCGCGGAGTTGCTGCAGGTGTGCAGAGACGTGCCGCCGACGT
CATTCGCCTTCAACTTTAGTCTGACCTTTCTCGACATCGCGCTGCGACGA
GCGCGGCCTTCAGAAAAGGGTACGGTCGCCGAGCAGATTGCGCGCGGCAT
ATCC
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