mRNA_H-elongata_contig107675.630.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig107675.630.1
Unique Name	mRNA_H-elongata_contig107675.630.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig107675.630.1 vs. uniprot
Match: A0A6H5JGS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS5_9PHAE)

HSP 1 Score: 266 bits (680), Expect = 1.490e-82
Identity = 146/192 (76.04%), Postives = 164/192 (85.42%), Query Frame = 1

Query:    1 QGSRAMTRLLVEGGASLDAVDVNGNGVVHAAVCDSPAVLAILIDNGADVTVANSHDLTPKGLCEQYCPPRLRGRMLQLLKEAMLARAKETARKERLTESQLNIEAVYHQLAMLRSKLAATAAARTEVPPSEAAAGAQTENSLLTLVEANVRVVEYQRDALQDLETTTTRVERMMRRLHMRLDTMSLKDTSHS 576
            +GSR MTRLLVEGGA+L+AVDVNGNGVVHAAVCDSPAVLAILID+GADVTVAN   LTP+ LCEQYCPPRL+ RMLQLLKE  LA+AK TARK ++ E Q+NIEAVYHQLAMLRSKLAATAAA T++P SEAA GAQ EN+LLTLVEANVRVVE QR AL+++E T  R+ERM RRLHMRLD +   D S S
Sbjct:  467 KGSRVMTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTVANFDGLTPQRLCEQYCPPRLKERMLQLLKEGALAQAKATARKNQVAEEQVNIEAVYHQLAMLRSKLAATAAANTDIPASEAAEGAQMENALLTLVEANVRVVEGQRHALENMEKTVDRMERMFRRLHMRLDLVHPGDVSFS 658

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BLAST of mRNA_H-elongata_contig107675.630.1 vs. uniprot
Match: D7FI34_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI34_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 2.210e-79
Identity = 139/192 (72.40%), Postives = 154/192 (80.21%), Query Frame = 1

Query:    1 QGSRAMTRLLVEGGASLDAVDVNGNGVVHAAVCDSPAVLAILIDNGADVTVANSHDLTPKGLCEQYCPPRLRGRMLQLLKEAMLARAKETARKERLTESQLNIEAVYHQLAMLRSKLAATAAARTEVPPSEAAAGAQTENSLLTLVEANVRVVEYQRDALQDLETTTTRVERMMRRLHMRLDTMSLKDTSHS 576
            +GSR MTRLLVEGGA+L+AVDVNGNGVVHAAVCDSPAVLAILID+GADVTV+N   LTP+ LCEQYCPPRL+ RMLQLLKEA LA+AK TARK ++ E Q+NIEAVYHQLAMLRSKLAATAAA T++P SEAA GAQ EN+LLTLVEANVRVVE QR               M RRLHMRLD +   D S S
Sbjct:   94 KGSRVMTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTVSNFDGLTPQRLCEQYCPPRLKERMLQLLKEAALAQAKATARKNQVAEEQVNIEAVYHQLAMLRSKLAATAAANTDIPASEAAEGAQMENALLTLVEANVRVVEGQRHXXXXXXXXXXXXXXMFRRLHMRLDLVHPGDVSFS 285

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig107675.630.1 vs. uniprot

BLAST of mRNA_H-elongata_contig107675.630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JGS5_9PHAE	1.490e-82	76.04	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FI34_ECTSI	2.210e-79	72.40	Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig107675	contig	H-elongata_contig107675:81..1717 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	245.0
Seed ortholog evalue	2.9e-62
Seed eggNOG ortholog	2880.D7FI34
EggNOG free text desc.	response to abiotic stimulus
EggNOG OGs	COG0666@1,KOG0504@2759
COG Functional cat.	G
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Ankyrin repeat-containing domain
Ec32 ortholog	Ec-10_003340.1
Exons	4
Model size	579
Cds size	564
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig107675.630.1	prot_H-elongata_contig107675.630.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig107675 96..1717 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929606.385457-UTR-H-elongata_contig107675:80..95	1622929606.385457-UTR-H-elongata_contig107675:80..95	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig107675 81..95 +
1691679088.9576607-UTR-H-elongata_contig107675:80..95	1691679088.9576607-UTR-H-elongata_contig107675:80..95	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig107675 81..95 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929606.4106266-CDS-H-elongata_contig107675:95..260	1622929606.4106266-CDS-H-elongata_contig107675:95..260	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig107675 96..260 +
1691679088.968146-CDS-H-elongata_contig107675:95..260	1691679088.968146-CDS-H-elongata_contig107675:95..260	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig107675 96..260 +
1622929606.433455-CDS-H-elongata_contig107675:603..723	1622929606.433455-CDS-H-elongata_contig107675:603..723	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig107675 604..723 +
1691679088.9770043-CDS-H-elongata_contig107675:603..723	1691679088.9770043-CDS-H-elongata_contig107675:603..723	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig107675 604..723 +
1622929606.4501908-CDS-H-elongata_contig107675:1041..1211	1622929606.4501908-CDS-H-elongata_contig107675:1041..1211	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig107675 1042..1211 +
1691679088.986027-CDS-H-elongata_contig107675:1041..1211	1691679088.986027-CDS-H-elongata_contig107675:1041..1211	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig107675 1042..1211 +
1622929606.4688268-CDS-H-elongata_contig107675:1608..1717	1622929606.4688268-CDS-H-elongata_contig107675:1608..1717	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig107675 1609..1717 +
1691679089.0013947-CDS-H-elongata_contig107675:1608..1717	1691679089.0013947-CDS-H-elongata_contig107675:1608..1717	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig107675 1609..1717 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig107675:81..1717+
coding sequence from alignment at H-elongata_contig107675:81..1717+

protein sequence of mRNA_H-elongata_contig107675.630.1

>prot_H-elongata_contig107675.630.1 ID=prot_H-elongata_contig107675.630.1|Name=mRNA_H-elongata_contig107675.630.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=188bp
MTRLLVEGGASLDAVDVNGNGVVHAAVCDSPAVLAILIDNGADVTVANSH
DLTPKGLCEQYCPPRLRGRMLQLLKEAMLARAKETARKERLTESQLNIEA
VYHQLAMLRSKLAATAAARTEVPPSEAAAGAQTENSLLTLVEANVRVVEY
QRDALQDLETTTTRVERMMRRLHMRLDTMSLKDTSHS*

mRNA from alignment at H-elongata_contig107675:81..1717+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig107675.630.1 ID=mRNA_H-elongata_contig107675.630.1|Name=mRNA_H-elongata_contig107675.630.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1637bp|location=Sequence derived from alignment at H-elongata_contig107675:81..1717+ (Himanthalia elongata Himel1 dioecious)
CAGGGATCGCGGGCGATGACGCGGCTGTTGGTGGAAGGAGGGGCCAGCCT
GGACGCGGTGGACGTGAATGGCAACGGGGTGGTTCACGCGGCGGTGTGCG
ACTCGCCCGCCGTATTAGCGATCCTCATTGACAACGGAGCGGACGTAACC
GTTGCCAACAGCCACGATCTCACGCCGAAGGTGTGAAAAGAGGCGTAGGA
GGCAAAGCGGCAGTTTATGTACGCCACGCGTTGCTCCGTACGGCGTCGGG
TAGTGTGGATAGGCTGCGTCTACCTGAATGAAGGGCGTCAGGGCAGTCAC
ATGTGAAGTTCGGTTCCGATTCCCGCCGCGATAGTACGAACCGCCTCGAG
CGGATGGCGTTGTCGCGAACGCCGCTTCCTTCTCGTAAGCGCGCGCTTGC
GCTCGAATAATGTTACGATGTAATTTGCGGCTCTTTTAAGGCTCTTGTGC
AATATTAATGCCCCCTGCCGGATCTTTTTCTTCGACTGCTGCCGCTCGGG
GGGGGGGGGGCGGCGTCGCGCAGGGATTGTGTGAGCAATATTGCCCACCG
CGCTTGAGGGGGCGGATGCTTCAGCTCCTGAAGGAGGCGATGCTAGCGCG
GGCGAAGGAAACGGCACGGAAGGAGCGCTTAACCGAGAGCCAGGTATGCC
AACGGGAGGAAGACAGGGAGGACAGCATGAGTCAAGTCTAGCGAATAACG
CAGCTGCTGCTGTACTGTATTAGAGTAGTATAACTCTGCCAGCAGTATTC
AAGGATATATCATCTGGGAATAAAGCGATGGATTATGAGACGGCCTTTTT
TTTAAAGCCGTGTTGCATGCGGAATCAAACTATTTGCCGAGCCGGACCAC
TTGCAAATTGTAACGGTGATGACTTAAAAATACCCCCCCCCCCCCCCGGT
GCGCCCCCTTCCGTCCCCACCACAACACCCCTTCACTCCTATCTGGGATT
CTCCCCGTCAGTTGAATATCGAGGCGGTGTACCACCAGCTCGCGATGCTG
CGGTCGAAGCTAGCGGCGACGGCAGCGGCGCGGACCGAAGTTCCGCCGTC
TGAAGCAGCGGCGGGCGCGCAGACGGAAAATTCCCTTCTGACTCTCGTTG
AGGCCAACGTGCGCGTGGTGGAATACCAGCGGTGAGGAAAGTAGACATGT
TCTTTTGTTTTGCTTTTGTTTTTTGTTTTGCTTTGTTTTGTTTTGTATTG
CTTTTTTGTTTCTGAGCTTTTTGTTGCCCCTTCCTTCGATTGCGAATGAA
ATACTTCGTATAATAGTTTGTGGAGAAAAGCGCTCGCGCTGCTTTCTAAT
CGGAGGGCGGTTCGCGAGACCCTCAAAGCGGGGGAGGGGAGGAGTCGTAT
CCCTTTAACCGATCTCGTTTCACACAAGCCTCTCGTTTTTCGCGACGCGC
ACGAGCATATTCGTTCCTTGCTTAAACCGGATTCTAGCCCCCACTTTTAT
TTTATTTTATTTTATTTTTCTGTTCTTCCCTTCACCTCCGGTGTGTATTT
GACGCGACGCCCCGTACTGTCTTATCAGGGATGCCTTACAGGACTTGGAA
ACCACGACAACGAGGGTGGAACGCATGATGCGCCGATTGCACATGCGGCT
CGACACCATGAGCCTGAAGGACACCAGCCATTCCTGA

Coding sequence (CDS) from alignment at H-elongata_contig107675:81..1717+

>mRNA_H-elongata_contig107675.630.1 ID=mRNA_H-elongata_contig107675.630.1|Name=mRNA_H-elongata_contig107675.630.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1128bp|location=Sequence derived from alignment at H-elongata_contig107675:81..1717+ (Himanthalia elongata Himel1 dioecious)
ATGACGCGGCTGTTGGTGGAAGGAGGGGCCAGCCTGGACGCGGTGGACGT
GAATGGCAACGGGGTGGTTCACGCGGCGGTGTGCGACTCGCCCGCCGTAT
TAGCGATCCTCATTGACAACGGAGCGGACGTAACCGTTGCCAACAGCCAC
GATCTCACGCCGAAGATGACGCGGCTGTTGGTGGAAGGAGGGGCCAGCCT
GGACGCGGTGGACGTGAATGGCAACGGGGTGGTTCACGCGGCGGTGTGCG
ACTCGCCCGCCGTATTAGCGATCCTCATTGACAACGGAGCGGACGTAACC
GTTGCCAACAGCCACGATCTCACGCCGAAGGGATTGTGTGAGCAATATTG
CCCACCGCGCTTGAGGGGGCGGATGCTTCAGCTCCTGAAGGAGGCGATGC
TAGCGCGGGCGAAGGAAACGGCACGGAAGGAGCGCTTAACCGAGAGCCAG
GGATTGTGTGAGCAATATTGCCCACCGCGCTTGAGGGGGCGGATGCTTCA
GCTCCTGAAGGAGGCGATGCTAGCGCGGGCGAAGGAAACGGCACGGAAGG
AGCGCTTAACCGAGAGCCAGTTGAATATCGAGGCGGTGTACCACCAGCTC
GCGATGCTGCGGTCGAAGCTAGCGGCGACGGCAGCGGCGCGGACCGAAGT
TCCGCCGTCTGAAGCAGCGGCGGGCGCGCAGACGGAAAATTCCCTTCTGA
CTCTCGTTGAGGCCAACGTGCGCGTGGTGGAATACCAGCGTTGAATATCG
AGGCGGTGTACCACCAGCTCGCGATGCTGCGGTCGAAGCTAGCGGCGACG
GCAGCGGCGCGGACCGAAGTTCCGCCGTCTGAAGCAGCGGCGGGCGCGCA
GACGGAAAATTCCCTTCTGACTCTCGTTGAGGCCAACGTGCGCGTGGTGG
AATACCAGCGGGATGCCTTACAGGACTTGGAAACCACGACAACGAGGGTG
GAACGCATGATGCGCCGATTGCACATGCGGCTCGACACCATGAGCCTGAA
GGACACCAGCCATTCCTGAGGATGCCTTACAGGACTTGGAAACCACGACA
ACGAGGGTGGAACGCATGATGCGCCGATTGCACATGCGGCTCGACACCAT
GAGCCTGAAGGACACCAGCCATTCCTGA