mRNA_H-elongata_contig10750.619.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10750.619.1
Unique NamemRNA_H-elongata_contig10750.619.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10750.619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10750contigH-elongata_contig10750:1968..2763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size400
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929604.9420626-CDS-H-elongata_contig10750:1968..20941622929604.9420626-CDS-H-elongata_contig10750:1968..2094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10750 1969..2094 -
1691679088.3669107-CDS-H-elongata_contig10750:1968..20941691679088.3669107-CDS-H-elongata_contig10750:1968..2094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10750 1969..2094 -
1622929604.9622424-CDS-H-elongata_contig10750:2490..27631622929604.9622424-CDS-H-elongata_contig10750:2490..2763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10750 2491..2763 -
1691679088.376095-CDS-H-elongata_contig10750:2490..27631691679088.376095-CDS-H-elongata_contig10750:2490..2763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10750 2491..2763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10750.619.1prot_H-elongata_contig10750.619.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10750 1969..2763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10750.619.1

>prot_H-elongata_contig10750.619.1 ID=prot_H-elongata_contig10750.619.1|Name=mRNA_H-elongata_contig10750.619.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
VQGSQQQQQPQREEASASVQWLRQVSAEATPTLPPPSAQQPHQQQEQQQA
DPQEQQQQGKQEREQICHLSTGRPVKARPGDSNSSSSHVQQVSSVESPSD
VPHRMDKAAGQKDDSRTEDNPGPSSPNNGRIKR
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mRNA from alignment at H-elongata_contig10750:1968..2763-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10750.619.1 ID=mRNA_H-elongata_contig10750.619.1|Name=mRNA_H-elongata_contig10750.619.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=796bp|location=Sequence derived from alignment at H-elongata_contig10750:1968..2763- (Himanthalia elongata Himel1 dioecious)
GTTCAGGGGTCCCAGCAGCAGCAACAGCCGCAACGGGAGGAGGCGTCAGC
ATCGGTGCAGTGGCTGCGGCAGGTGTCGGCGGAAGCAACACCTACGCTGC
CGCCACCTTCCGCTCAACAGCCACACCAGCAGCAGGAGCAGCAGCAGGCC
GATCCCCAGGAGCAGCAGCAGCAAGGAAAGCAAGAGCGGGAGCAGATTTG
TCATTTATCTACAGGACGACCGGTCAAGGCCCGGCCTGGCGACAGTAACT
CTTCTTCTTCCCATGTGCAGCAGGCAAGTGTAGCGCAGTATGCAGGTATA
TGATATGCCTTGATGCCGCCAGCTGACACGCATCCATATTTGTTTTGATT
TCACATCCAAAGGTAGCTTCGTTGGAGGCCACGATTATTCCCAACTCGTG
GTTCCTCCTGTGCCACCCGCCTCCCATGTGATGCAAACAAGGAGCACCTC
TTTACGGTCACCGATAATCGCCGTTTATGTTGTTACCCTTCAGCCCTCGC
CGTCGAGTTGGATCCCACCCACCCCTCTCCCCGCTACAGCAACCCGAACA
CACGAAAATGGGGGTCGGTCGTGCAGGGTGAATTCTTCCGCTCAGTTTCC
AGCGTGTGATGGATCGGTGAGTACCTAACTGAATCCTCTGCAACTACCGC
TGCTTTCCTCTCCAACAAGGTATCTTCGGTCGAGTCACCTTCGGACGTGC
CCCATCGAATGGACAAGGCGGCTGGTCAGAAGGACGACTCGCGAACCGAG
GACAACCCCGGGCCGTCGTCACCAAACAACGGCCGGATTAAGAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig10750:1968..2763-

>mRNA_H-elongata_contig10750.619.1 ID=mRNA_H-elongata_contig10750.619.1|Name=mRNA_H-elongata_contig10750.619.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig10750:1968..2763- (Himanthalia elongata Himel1 dioecious)
GTTCAGGGGTCCCAGCAGCAGCAACAGCCGCAACGGGAGGAGGCGTCAGC
ATCGGTGCAGTGGCTGCGGCAGGTGTCGGCGGAAGCAACACCTACGCTGC
CGCCACCTTCCGCTCAACAGCCACACCAGCAGCAGGAGCAGCAGCAGGCC
GATCCCCAGGAGCAGCAGCAGCAAGGAAAGCAAGAGCGGGAGCAGATTTG
TCATTTATCTACAGGACGACCGGTCAAGGCCCGGCCTGGCGACAGTAACT
CTTCTTCTTCCCATGTGCAGCAGGTTCAGGGGTCCCAGCAGCAGCAACAG
CCGCAACGGGAGGAGGCGTCAGCATCGGTGCAGTGGCTGCGGCAGGTGTC
GGCGGAAGCAACACCTACGCTGCCGCCACCTTCCGCTCAACAGCCACACC
AGCAGCAGGAGCAGCAGCAGGCCGATCCCCAGGAGCAGCAGCAGCAAGGA
AAGCAAGAGCGGGAGCAGATTTGTCATTTATCTACAGGACGACCGGTCAA
GGCCCGGCCTGGCGACAGTAACTCTTCTTCTTCCCATGTGCAGCAGGTAT
CTTCGGTCGAGTCACCTTCGGACGTGCCCCATCGAATGGACAAGGCGGCT
GGTCAGAAGGACGACTCGCGAACCGAGGACAACCCCGGGCCGTCGTCACC
AAACAACGGCCGGATTAAGAGGGTATCTTCGGTCGAGTCACCTTCGGACG
TGCCCCATCGAATGGACAAGGCGGCTGGTCAGAAGGACGACTCGCGAACC
GAGGACAACCCCGGGCCGTCGTCACCAAACAACGGCCGGATTAAGAGG
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