mRNA_H-elongata_contig10736.607.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10736.607.1
Unique NamemRNA_H-elongata_contig10736.607.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10736.607.1 vs. uniprot
Match: A0A6H5JXK5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK5_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 3.680e-26
Identity = 59/104 (56.73%), Postives = 77/104 (74.04%), Query Frame = 1
Query:   88 RSWELVNPSTAPRSGADVTMATRTSVPHFAELLRGQNVTELVRITPLTPHTEYGHLVALGSVGFCLCTCLRLLIDALCCRHGLKAMYGKELS-FNGACIAPRWR 396
            RS ELV+PS      + +TM +RTSVPHFA+LLRGQNV  +VRI+ +TP +E+GHLVA+GS GF LCTCLR L+  L C H +KA++ + ++ FNGA I P WR
Sbjct:  653 RSGELVDPSHETPDASGITMVSRTSVPHFADLLRGQNVDAVVRISKITPPSEFGHLVAVGSDGFFLCTCLRQLVYGLLCPHVIKALWSQRITRFNGASIGPWWR 756          
BLAST of mRNA_H-elongata_contig10736.607.1 vs. uniprot
Match: D8LSE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE5_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 4.760e-26
Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 1
Query:   91 SWELVNPSTAPRSGADVTMATRTSVPHFAELLRGQNVTELVRITPLTPHTEYGHLVALGSVGFCLCTCLRLLIDALCCRHGLKAM-YGKELSFNGACIAPRWR 396
            S ELV+PS      A V+M +RTSVPHFAELLR QNV  +VRITP++  +E GHLVALG  GF LCTCLR L+  L C H +KA+ Y +   FNGA I+PRWR
Sbjct:  106 SGELVDPSIPTSEAAGVSMVSRTSVPHFAELLRDQNVHTVVRITPMSTASECGHLVALGPDGFFLCTCLRQLVYGLLCPHAIKALWYQRASQFNGATISPRWR 208          
BLAST of mRNA_H-elongata_contig10736.607.1 vs. uniprot
Match: D7FVI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI8_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 8.500e-26
Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 1
Query:   91 SWELVNPSTAPRSGADVTMATRTSVPHFAELLRGQNVTELVRITPLTPHTEYGHLVALGSVGFCLCTCLRLLIDALCCRHGLKAM-YGKELSFNGACIAPRWR 396
            S ELV+PS      A V+M +RTSVPHFAELLR QNV  +VRITP++  +E GHLVALG  GF LCTCLR L+  L C H +KA+ Y +   FNGA I+PRWR
Sbjct:  239 SGELVDPSIPTSEAAGVSMVSRTSVPHFAELLRDQNVHTVVRITPMSTASECGHLVALGPDGFFLCTCLRQLVYGLLCPHAIKALWYQRASQFNGATISPRWR 341          
BLAST of mRNA_H-elongata_contig10736.607.1 vs. uniprot
Match: A0A6H5JB23_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB23_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 2.050e-25
Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 1
Query:   91 SWELVNPSTAPRSGADVTMATRTSVPHFAELLRGQNVTELVRITPLTPHTEYGHLVALGSVGFCLCTCLRLLIDALCCRHGLKAMYGKELS-FNGACIAPRWR 396
            S +L++P  A    A V+M +RTSVPHFA LLR QNV  +VR++ +TP +E+GHLVALG  GF LCTCLR L   L C HGLKAM+ + +  FNGA I+PRWR
Sbjct:  562 SGDLIDPLQATTGAAGVSMVSRTSVPHFAHLLRDQNVNSVVRVSMITPPSEFGHLVALGPDGFFLCTCLRQLEHGLLCPHGLKAMWTEGVDRFNGATISPRWR 664          
BLAST of mRNA_H-elongata_contig10736.607.1 vs. uniprot
Match: D8LJH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH3_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 2.440e-25
Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 1
Query:   91 SWELVNPSTAPRSGADVTMATRTSVPHFAELLRGQNVTELVRITPLTPHTEYGHLVALGSVGFCLCTCLRLLIDALCCRHGLKAM-YGKELSFNGACIAPRWR 396
            S ELV+PS      A V+M +RTSVPHFAELLR QNV  +VRITP++  +E GHLVALG  GF LCTCLR L+  L C H +KA+ Y +   FNGA I+PRWR
Sbjct:  239 SGELVDPSIPTSEAACVSMVSRTSVPHFAELLRDQNVHTVVRITPMSTASECGHLVALGPDGFFLCTCLRQLVYGLLCPHAIKALWYQRASQFNGATISPRWR 341          
BLAST of mRNA_H-elongata_contig10736.607.1 vs. uniprot
Match: A0A6H5KDY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDY3_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 4.240e-25
Identity = 55/90 (61.11%), Postives = 64/90 (71.11%), Query Frame = 1
Query:  127 SGADVTMATRTSVPHFAELLRGQNVTELVRITPLTPHTEYGHLVALGSVGFCLCTCLRLLIDALCCRHGLKAMYGKELSFNGACIAPRWR 396
            +  D TMATRTSVPH+ +LL GQ V ELVR+TPL   +EYGHLVAL   GF LCTCLR L+  L CRH + AM+ K   FNGA + PRWR
Sbjct:  138 TATDDTMATRTSVPHYVDLLDGQGVEELVRVTPLMSASEYGHLVALAPAGFYLCTCLRQLVHGLVCRHAIIAMHKKPGGFNGASVHPRWR 227          
BLAST of mRNA_H-elongata_contig10736.607.1 vs. uniprot
Match: A0A6H5JRX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRX3_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.700e-24
Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 1
Query:   34 DTWLRL*RLVTTTCSAYL----RSWELVNPSTAPRSGADVTMATRTSVPHFAELLRGQNVTELVRITPLTPHTEYGHLVALGSVGFCLCTCLRLLIDALCCRHGLKAMYGKEL-SFNGACIAPRW 393
            + W  L  L      A L     S EL++PS        V+  +RTSVPHFA+LLR QNV  +VR++ + P +E+GHLVALG  GF LCTCLR L+  L C HGLKA++ + + SF GA I+PRW
Sbjct:  121 EAWRLLDELAANPAKAKLCYDTSSGELIDPSQPTTEAPGVSTVSRTSVPHFADLLRDQNVNAVVRVSMIAPPSEFGHLVALGPDGFFLCTCLRQLVYGLLCPHGLKALWAEGVVSFKGATISPRW 245          
BLAST of mRNA_H-elongata_contig10736.607.1 vs. uniprot
Match: A0A6H5KQ14_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ14_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 5.530e-24
Identity = 60/107 (56.07%), Postives = 70/107 (65.42%), Query Frame = 1
Query:   91 SWELVNPSTAPRSGADVTMATRTSVPHFAELLRGQNVTELVRITPLTPHTEYGHLVALGSVGFCLCTCLRLLIDALCCRHGLKAMY-----GKELSFNGACIAPRWR 396
            S E ++P       A VTMATRTSV HFA+LL  QNV ELVRIT     +E+GHLVALG  GF LCTCLR+L+  L C H +KA+       K  SFN ACI+PRWR
Sbjct:  340 SGEFIDPGGEAAGPAHVTMATRTSVAHFADLLHDQNVEELVRITIFNAQSEFGHLVALGPDGFFLCTCLRMLVYGLPCPHCIKALAHMRGNDKVFSFNAACISPRWR 446          
BLAST of mRNA_H-elongata_contig10736.607.1 vs. uniprot
Match: A0A6H5JGY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY2_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 7.730e-23
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 1
Query:   91 SWELVNPSTAPRSGADVTMATRTSVPHFAELLRGQNVTELVRITPLTPHTEYGHLVALGSVGFCLCTCLRLLIDALCCRHGLKAMYGKEL-SFNGACIAPRWR 396
            S + ++PS        V+M +RTSVPH A+LLR QNV  +VR++ +TP +EY HLVALG  GF LCTCLR L+  L C HGL+A++ + + SFNGA I+PRWR
Sbjct:  805 SGDPMDPSQPTTEAPGVSMVSRTSVPHVADLLRDQNVNAVVRVSMITPLSEYSHLVALGPDGFFLCTCLRQLVYGLLCPHGLEALWAEGVVSFNGAIISPRWR 907          
BLAST of mRNA_H-elongata_contig10736.607.1 vs. uniprot
Match: A0A6H5K1S8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S8_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.400e-21
Identity = 53/88 (60.23%), Postives = 64/88 (72.73%), Query Frame = 1
Query:  136 DVTMATRTSVPHFAELLRGQNVTELVRIT-PLTPHTEYGHLVALGSVGFCLCTCLRLLIDALCCRHGLKAMYGKELSFNGACIAPRWR 396
            DVT+ATRTS+  FAELL+ Q +  LVR++      T+Y  LVALG  GF LCTCLR+L+D L CRH L+AM G +L F GACIAPRWR
Sbjct:  280 DVTLATRTSIEFFAELLKDQVLDRLVRVSRSFGDQTKYCQLVALGPDGFFLCTCLRILVDGLGCRHALRAMRGTDLGFTGACIAPRWR 367          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10736.607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JXK5_9PHAE3.680e-2656.73SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
D8LSE5_ECTSI4.760e-2659.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVI8_ECTSI8.500e-2659.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JB23_9PHAE2.050e-2557.28MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LJH3_ECTSI2.440e-2559.22Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KDY3_9PHAE4.240e-2561.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRX3_9PHAE2.700e-2448.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ14_9PHAE5.530e-2456.07SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JGY2_9PHAE7.730e-2353.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1S8_9PHAE1.400e-2160.23SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10736contigH-elongata_contig10736:7988..8845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size813
Cds size483
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10736.607.1prot_H-elongata_contig10736.607.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10736 7988..8470 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929603.692713-CDS-H-elongata_contig10736:7987..84701622929603.692713-CDS-H-elongata_contig10736:7987..8470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10736 7988..8470 -
1691679087.898884-CDS-H-elongata_contig10736:7987..84701691679087.898884-CDS-H-elongata_contig10736:7987..8470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10736 7988..8470 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929603.710613-UTR-H-elongata_contig10736:8470..87031622929603.710613-UTR-H-elongata_contig10736:8470..8703Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10736 8471..8703 -
1691679087.9086242-UTR-H-elongata_contig10736:8470..87031691679087.9086242-UTR-H-elongata_contig10736:8470..8703Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10736 8471..8703 -
1622929603.7260609-UTR-H-elongata_contig10736:8750..88451622929603.7260609-UTR-H-elongata_contig10736:8750..8845Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10736 8751..8845 -
1691679087.9181278-UTR-H-elongata_contig10736:8750..88451691679087.9181278-UTR-H-elongata_contig10736:8750..8845Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10736 8751..8845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10736.607.1

>prot_H-elongata_contig10736.607.1 ID=prot_H-elongata_contig10736.607.1|Name=mRNA_H-elongata_contig10736.607.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp
MVSRPCTARNSASMEHALHPGGVDDGSAGRQACEAIGDRDGGVRAVPARR
HGRCKSCRFLALGTHREISRLRKLLYARERARKHGGGSNHHHRRHSTLNE
QIKKYAVQVIETEERSKKNASPNMIFVSRPAADSPGGGAGRGELGRAIGG
TEHRVAGRAAA
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mRNA from alignment at H-elongata_contig10736:7988..8845-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10736.607.1 ID=mRNA_H-elongata_contig10736.607.1|Name=mRNA_H-elongata_contig10736.607.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=858bp|location=Sequence derived from alignment at H-elongata_contig10736:7988..8845- (Himanthalia elongata Himel1 dioecious)
AGGACATGCAAGCGGAGGTCCTGACCTCACTGGGATACGTGGCTCAGGTT GTGAAGACTGGTAACGACAACGTGCAGTGCCTACTTGCGGAGTTGGTGGC GGAGCCGAGTAAGGCACAGCTGTAGTACAACACCAACTCCAGGGAGTTGG TTAACCCATCAACAGCGCCCCGTAGCGGCGCTGATGTCACCATGGCCACC CGTACGTCCGTGCCTCACTTTGCGGAGTTGCTCCGTGGCCAGAATGTCAC CGAACTCGTGCGCATCACCCCCTTGACGCCGCACACCGAGTACGGTCACC TCGTCGCCCTAGGATCCGTGGGCTTCTGCCTCTGCACGTGCCTGAGGCTG TTGATCGACGCACTATGTTGCCGACATGGTCTCAAGGCCATGTACGGCAA GGAACTCAGCTTCAATGGAGCATGCATTGCACCCCGGTGGCGTGGACGAT GGCAGCGCTGGCCGCCAAGCCTGCGAGGCTATCGGCGACAGGGACGGAGG GGTCCGGGCAGTTCCCGCCCGTCGACACGGACGATGCAAGTCCTGTCGTT TTCTCGCACTCGGAACCCACCGTGAGATCTCACGTCTTCGGAAACTTTTG TACGCTCGGGAAAGAGCTCGCAAGCATGGCGGTGGATCGAATCACCACCA TCGAAGGCACTCAACGCTTAATGAACAAATCAAGAAATATGCGGTTCAGG TGATAGAGACAGAGGAGAGGTCTAAAAAAAACGCCTCACCGAACATGATT TTCGTTTCCCGGCCCGCAGCCGACTCGCCGGGCGGTGGGGCGGGACGAGG AGAGCTCGGGCGGGCCATAGGGGGGACGGAACATCGAGTGGCCGGTCGGG CGGCGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig10736:7988..8845-

>mRNA_H-elongata_contig10736.607.1 ID=mRNA_H-elongata_contig10736.607.1|Name=mRNA_H-elongata_contig10736.607.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig10736:7988..8845- (Himanthalia elongata Himel1 dioecious)
ATGGTCTCAAGGCCATGTACGGCAAGGAACTCAGCTTCAATGGAGCATGC
ATTGCACCCCGGTGGCGTGGACGATGGCAGCGCTGGCCGCCAAGCCTGCG
AGGCTATCGGCGACAGGGACGGAGGGGTCCGGGCAGTTCCCGCCCGTCGA
CACGGACGATGCAAGTCCTGTCGTTTTCTCGCACTCGGAACCCACCGTGA
GATCTCACGTCTTCGGAAACTTTTGTACGCTCGGGAAAGAGCTCGCAAGC
ATGGCGGTGGATCGAATCACCACCATCGAAGGCACTCAACGCTTAATGAA
CAAATCAAGAAATATGCGGTTCAGGTGATAGAGACAGAGGAGAGGTCTAA
AAAAAACGCCTCACCGAACATGATTTTCGTTTCCCGGCCCGCAGCCGACT
CGCCGGGCGGTGGGGCGGGACGAGGAGAGCTCGGGCGGGCCATAGGGGGG
ACGGAACATCGAGTGGCCGGTCGGGCGGCGGCGATGGTCTCAAGGCCATG
TACGGCAAGGAACTCAGCTTCAATGGAGCATGCATTGCACCCCGGTGGCG
TGGACGATGGCAGCGCTGGCCGCCAAGCCTGCGAGGCTATCGGCGACAGG
GACGGAGGGGTCCGGGCAGTTCCCGCCCGTCGACACGGACGATGCAAGTC
CTGTCGTTTTCTCGCACTCGGAACCCACCGTGAGATCTCACGTCTTCGGA
AACTTTTGTACGCTCGGGAAAGAGCTCGCAAGCATGGCGGTGGATCGAAT
CACCACCATCGAAGGCACTCAACGCTTAATGAACAAATCAAGAAATATGC
GGTTCAGGTGATAGAGACAGAGGAGAGGTCTAAAAAAAACGCCTCACCGA
ACATGATTTTCGTTTCCCGGCCCGCAGCCGACTCGCCGGGCGGTGGGGCG
GGACGAGGAGAGCTCGGGCGGGCCATAGGGGGGACGGAACATCGAGTGGC
CGGTCGGGCGGCGGCG
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