mRNA_H-elongata_contig10730.601.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10730.601.1
Unique NamemRNA_H-elongata_contig10730.601.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10730.601.1 vs. uniprot
Match: D7FV68_ECTSI (Probable chromatin remodelling complex ATPase chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV68_ECTSI)

HSP 1 Score: 350 bits (898), Expect = 1.910e-108
Identity = 183/203 (90.15%), Postives = 193/203 (95.07%), Query Frame = 1
Query:    1 VVERAQQKLKLDAMIVQQGRLAENAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIMEHGKEKTKALMESKLQISDKGDLLDFSLDGGIATQVYEGVDYSNKANRAEAAGGPVPFQLIDTGKRERKKVPSYKEDNFYRQQQAAAIKKRTVMPKHLRLPRMDECQFYDKKRLEQLHRREEQLFVEAKDKNLLPSDLNSYE 609
            VVERAQQKLKLDAMIVQQGRL +NAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIM HGKEKTKALMESKLQ+SDKGDLLDFSLDGGIATQVYEGVDYSNKANRA+A GG VPFQ IDTGKRERKK+ SYKED FYRQQQAAAIK+RT+MPKHLRLPRMDECQFYDKKRLEQLHR+EEQLFVEAK+K  LP+DL +YE
Sbjct:  703 VVERAQQKLKLDAMIVQQGRLTDNAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIMAHGKEKTKALMESKLQVSDKGDLLDFSLDGGIATQVYEGVDYSNKANRADAGGGAVPFQFIDTGKRERKKIASYKEDTFYRQQQAAAIKRRTMMPKHLRLPRMDECQFYDKKRLEQLHRKEEQLFVEAKEKGDLPNDLTNYE 905          
BLAST of mRNA_H-elongata_contig10730.601.1 vs. uniprot
Match: A0A835YGX5_9STRA (Putative chromatin remodelling complex ATPase chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGX5_9STRA)

HSP 1 Score: 207 bits (527), Expect = 6.910e-58
Identity = 123/201 (61.19%), Postives = 157/201 (78.11%), Query Frame = 1
Query:    1 VVERAQQKLKLDAMIVQQGRLAE-NAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIMEHGKEKTKALMESKLQISDKGDLLDFSLDGGIATQVYEGVDYSNKANRAEAAGGPVPFQLIDTGKRERKKVPSY--KEDNFYRQQQAAAIKKR-TVMPKHLRLPRMDECQFYDKKRLEQLHRREEQLFVEAKDKNLLPS 591
            VVERAQQKLK+DAMIVQQGRL E N KK  K++LL+A+RFGAD VFRSK++SI+D DIDAI+  G+++TK + E+++  +DKGD+LDF LDGG+ TQ +EGVDYSN+ANR +A     PF  IDTGKRERKKV SY   E    +Q+ AAA +KR T +PKHLRLP+MDE QFYD+KRL +L+  EE+L+ +AK +  LPS
Sbjct:  734 VVERAQQKLKMDAMIVQQGRLQEQNNKKFSKDELLEAIRFGADSVFRSKESSISDEDIDAILAAGEKRTKEI-EARISKADKGDMLDFRLDGGLETQRFEGVDYSNRANRIDAG---APF-YIDTGKRERKKVQSYVSSETQGLQQKAAAAARKRGTRLPKHLRLPKMDEWQFYDRKRLTELNELEEELYAKAKQEGKLPS 929          
BLAST of mRNA_H-elongata_contig10730.601.1 vs. uniprot
Match: A0A7S3UVN6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVN6_HETAK)

HSP 1 Score: 177 bits (450), Expect = 1.400e-52
Identity = 111/200 (55.50%), Postives = 139/200 (69.50%), Query Frame = 1
Query:    1 VVERAQQKLKLDAMIVQQGRLAENAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIMEHGKEKTKALMESKLQISDKGDLLDFSLDGGIATQVYEGVDYSNKANRAEAAGGPVPFQLIDTGKRERKKVPSYK--EDNF---YRQQQAAAI-----KKRTVMPKHLRLPRMDECQFYDKKRLEQLHRREEQLFVEAK 570
            VVERAQQKLKLDAM+VQQGRL E  KK+ K+ LL A+RFGAD+VFRSK+++ITD DIDAI+E GK KT  L E K+Q S+KGDLLDF LDGG  +Q +EGVDY ++  R+   G      +ID GKRERKKV  Y+  +D     +   +AAA      KKR+ +P+  RLPRMD+ Q++ K RLE LH  EE+ F E K
Sbjct:   18 VVERAQQKLKLDAMVVQQGRLQEKEKKVSKDDLLSAVRFGADQVFRSKESTITDEDIDAILERGKNKTAELQE-KIQASEKGDLLDFRLDGGFKSQEFEGVDYGDRETRSRMLG------VIDIGKRERKKVVQYQYADDPLAPAHGNAKAAAAAAWSGKKRSRLPRAFRLPRMDDWQWFAKGRLEALHAMEERKFAELK 210          
BLAST of mRNA_H-elongata_contig10730.601.1 vs. uniprot
Match: A0A7S2F963_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F963_9STRA)

HSP 1 Score: 187 bits (476), Expect = 2.770e-52
Identity = 110/204 (53.92%), Postives = 142/204 (69.61%), Query Frame = 1
Query:    1 VVERAQQKLKLDAMIVQQGRLAENAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIMEHGKEKTKALMESKLQISDKGDLLDFSLDGGIATQVYEGVDYSNKANR-AEAAGGPVPFQLIDTGKRERKKVPSYKEDNFYRQQ--QAAAIKKRTVMPKHLRLPRMDECQFYDKKRLEQLHRREEQLFVEAKDKNLLPSDLNS 603
            VVERA QKLKLDAM+VQQGRL +  KKL KE +L A++FGAD VFR+ DTSITD DIDAI+E G++KT  L   KL+ + KGD+LDF LDG + TQVYEGVDYS+  NR +  A   V  Q     KR+RK V +Y ED +YR+Q    ++  ++  MPKHLRLP+M+E QFYD  +L+ LH  EE  ++E K+K  LP  + +
Sbjct:   53 VVERAHQKLKLDAMVVQQGRLQDKEKKLSKEDMLAAIKFGADHVFRANDTSITDEDIDAIIERGQKKTSDLF-GKLEEASKGDVLDFKLDGSMPTQVYEGVDYSDSKNRQSNLAELMVLDQATADDKRQRKPVTNYNEDAYYRKQINVGSSDARKVKMPKHLRLPKMEEWQFYDTDKLQSLHALEEARYMELKEKKALPPSIKT 255          
BLAST of mRNA_H-elongata_contig10730.601.1 vs. uniprot
Match: A0A4Q3BVT5_9BACT (SANT domain-containing protein n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q3BVT5_9BACT)

HSP 1 Score: 181 bits (459), Expect = 3.200e-52
Identity = 106/200 (53.00%), Postives = 143/200 (71.50%), Query Frame = 1
Query:    1 VVERAQQKLKLDAMIVQQGRLAENAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIMEHGKEKTKALMESKLQISDKGDLLDFSLDGGIATQVYEGVDYSNKANRAEAAGGPVPFQLIDTGKRERKKVPSYKEDNFYRQQQAAAIK---KRTVMPKHLRLPRMDECQFYDKKRLEQLHRREEQLFVEAKDKNLLPS 591
            VVERAQQKLKLDAM+VQQGRL +  KK+ K+ LLD LRFGADK+FRSK+++ITDADID I+E GK +T+ + E KLQ+++KGD+ DF LDGG+  QV+EG DYS   ++ E     + F  ID GKRERK V SY E     Q +AAA++   K+  +P+HLRL ++++ QF+D+ RL +L   E +LF E  +K  +PS
Sbjct:   10 VVERAQQKLKLDAMVVQQGRLQDKEKKMSKQDLLDTLRFGADKIFRSKESTITDADIDLILEEGKRRTEEMTE-KLQVAEKGDMYDFRLDGGMGAQVFEGKDYSRDRDKGEK-NPLLNFAFIDPGKRERKTVLSYSES----QPRAAAVEEGEKKPKLPRHLRLNKLEDWQFFDRPRLGELQAEEVRLFDELVEKGEVPS 203          
BLAST of mRNA_H-elongata_contig10730.601.1 vs. uniprot
Match: A0A7S3HIT7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HIT7_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.690e-46
Identity = 104/188 (55.32%), Postives = 134/188 (71.28%), Query Frame = 1
Query:    1 VVERAQQKLKLDAMIVQQGRLAENAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIMEHGKEKTKALMESKLQISDKGDLLDFSLDGGIATQVYEGVDYSNKANRAEAAGGPVPFQLIDTGKRERKKVPSYKEDNFYRQQQAAAIK--KRTVMPKHLRLPRMDECQFYDKKRLEQLHRREEQLF 558
            VVERAQQKLKLDAM+VQQGRL +  KK+ K+ LLD LRFGADK+FRSKD++I+DADID I+E G+++T+ +  +KLQ +DKGD+ DF LDGG+ATQV+EGVDYS K  R         F  +D GKRERK V +Y E       +A A+   KR  +P+HLRL +M++ QF+DK RL  L   E +LF
Sbjct:  407 VVERAQQKLKLDAMVVQQGRLQDKEKKMTKQDLLDTLRFGADKIFRSKDSTISDADIDLILEEGRKRTEEM--TKLQTNDKGDMYDFKLDGGMATQVFEGVDYSTKDARERELLAQSAF-FLDPGKRERKGVANYSETAT----RAPALDEDKRPKLPRHLRLNKMEDWQFFDKARLTDLQAEEIRLF 587          
BLAST of mRNA_H-elongata_contig10730.601.1 vs. uniprot
Match: A0A7S1USI6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1USI6_9STRA)

HSP 1 Score: 173 bits (438), Expect = 5.060e-46
Identity = 115/238 (48.32%), Postives = 156/238 (65.55%), Query Frame = 1
Query:    1 VVERAQQKLKLDAMIVQQGRLAENAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIMEHGKEKTKALMESKLQISDKGDLLDFSLDGG-IATQVYEGVDYSNKANRAEAAGGPVPFQLIDTGKRERKKVPSYKEDNFYRQQQAA-------AIKKRTVMPKHLRLPRMDECQFYDKKRLEQLHRREEQLFVEAKDKNLLPSDLNSYEA-----REKERXXXXXXXEPSEQALLL 675
            +VERAQQKLKLDAM+VQQGRL E  +K+ +++LL+A+RFGADKVF++KD+SITD DID I++ GK+KT  L E KLQ +DKGDLLDF LDGG ++ Q +EG+DY+ KA +A+A      F ++D GKRER+ V +Y E   Y+ Q AA       A KK+  +PK LRLPRM+E Q +D+  L+++   EE+ F       LLP D+    A     +E+E+        P E   LL
Sbjct:  218 IVERAQQKLKLDAMVVQQGRLKEK-EKMSRDELLNAVRFGADKVFKTKDSSITDDDIDLILDQGKKKTAELNE-KLQNADKGDLLDFKLDGGGLSAQTFEGIDYA-KAAQAQAE----MFGIMDIGKRERRTVANYNESQLYQNQIAALQGTKKPAKKKQPKLPKSLRLPRMEEYQMFDRTALQKISEEEEKAF------KLLPEDIQKMAAGKIPKKEEEKEEGKEEAAPFEMPPLL 442          
BLAST of mRNA_H-elongata_contig10730.601.1 vs. uniprot
Match: A0A7S2UIC6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UIC6_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.490e-45
Identity = 106/198 (53.54%), Postives = 135/198 (68.18%), Query Frame = 1
Query:    1 VVERAQQKLKLDAMIVQQGRLAENAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIMEHGKEKTKALMESKLQISDKGDLLDFSLDGGIATQVYEGVDYSNKANRAEAA-GGPVPFQLI---DTGKRERKKVPSYKEDNFYRQQQA--------AAIKKRTVMPKHLRLPRMDECQFYDKKRLEQLHRREEQLF 558
            VVERAQQKLKLDAM+VQQGRL +    L  E+LL A+RFGADKVF+SKD+SITD DID I++ GK+KT+ + E KLQ ++KGD+LDF LDGGI+TQ +EG+DYS +    +A     V  +L+   D GKRER+ V +Y ED  Y+QQ A           KK T +PK+LRLPRM+E Q +D+  L  L   EE  F
Sbjct:  673 VVERAQQKLKLDAMVVQQGRLKDKDS-LSSEELLAAVRFGADKVFKSKDSSITDDDIDMILDQGKKKTQEMNE-KLQNAEKGDMLDFKLDGGISTQTFEGIDYSQRGKDMDAVKAAQVQAELLGIMDMGKRERRTVANYNEDQLYKQQIALQQGGRVKVRKKKETRLPKYLRLPRMEEWQMFDRDALLALQEMEENAF 868          
BLAST of mRNA_H-elongata_contig10730.601.1 vs. uniprot
Match: A0A7S2LAQ2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LAQ2_9STRA)

HSP 1 Score: 169 bits (429), Expect = 9.400e-45
Identity = 101/209 (48.33%), Postives = 139/209 (66.51%), Query Frame = 1
Query:    1 VVERAQQKLKLDAMIVQQGRLAENAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIMEHGKEKTKALMESKLQISDKGDLLDFSLDGGIATQVYEGVDYSNKANRAEAAGGPVPFQLIDTGKRERKKVPSYKEDNFYRQQQAAAI------KKRTVMPKHLRLPRMDECQFYDKKRLEQLHRREEQLFVEAKDKNLLPSDLNSYE 609
            +VERAQQKLKLDAM+VQQGRL +   KL  +++L A+RFGADK+F+S D+SIT+ DID I++ GK+KT+A+ E KL++++KGDLLDF LD G + Q +EGVDYS+  +R+E  G      ++D GKRER  V +Y E   Y+Q     +      KK   +PK LRLPRMDE Q +D+  L  +   EE+ +    D+  LP+DL   E
Sbjct:  424 IVERAQQKLKLDAMVVQQGRLKDAKAKLSSDEILKAVRFGADKIFKSTDSSITNDDIDLILDAGKKKTEAMNE-KLKVAEKGDLLDFKLDVGESLQTFEGVDYSHAQSRSEILG------ILDLGKRERNVVANYNESVLYKQVADGGLPKPERKKKEKRLPKFLRLPRMDEWQMFDRDTLNIIQLEEEKEYKRLADEGKLPTDLTKVE 625          
BLAST of mRNA_H-elongata_contig10730.601.1 vs. uniprot
Match: B8C4D6_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4D6_THAPS)

HSP 1 Score: 167 bits (424), Expect = 4.190e-44
Identity = 106/216 (49.07%), Postives = 140/216 (64.81%), Query Frame = 1
Query:    1 VVERAQQKLKLDAMIVQQGRLAENAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIMEHGKEKTKALMESKLQISDKGDLLDFSLDGGIATQVYEGVDYSNKANRAEAAGGPVPFQLIDTGKRERKKVPSYKEDNFYRQQQAAA--------IKKRTVMPKHLRLPRMDECQFYDKKRLEQLHRREEQLFVEAKDKNLLPSDLNSYEAREKE 624
            VVERAQQKLKLDAM+VQQGRL +  K L +E+LLDA+RFGADK+F+SKD+SITD DID I+ +G +KT+ L + KLQ + KGD+LDF LDGG++ Q +EG+DYS +A  A+     +   ++D GKRER+ V +Y E+  Y QQ A          +KK   +PK  RLPRM+E Q +D+  L  L   EEQ F        LP D+   +  E E
Sbjct:  587 VVERAQQKLKLDAMVVQQGRLKDKDK-LSREELLDAVRFGADKIFKSKDSSITDDDIDIILGYGAKKTQELND-KLQAAQKGDMLDFKLDGGLSAQTFEGIDYSEEAKNAQFQAEILG--IMDVGKRERRTV-AYNENQLYMQQMAQQGANPPKKKVKKEIKLPKMFRLPRMEEWQMFDRDSLNALQEVEEQAF------RALPEDIQETKEGEAE 791          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10730.601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV68_ECTSI1.910e-10890.15Probable chromatin remodelling complex ATPase chai... [more]
A0A835YGX5_9STRA6.910e-5861.19Putative chromatin remodelling complex ATPase chai... [more]
A0A7S3UVN6_HETAK1.400e-5255.50Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2F963_9STRA2.770e-5253.92Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A4Q3BVT5_9BACT3.200e-5253.00SANT domain-containing protein n=1 Tax=Verrucomicr... [more]
A0A7S3HIT7_9STRA1.690e-4655.32Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1USI6_9STRA5.060e-4648.32Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2UIC6_9STRA1.490e-4553.54Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S2LAQ2_9STRA9.400e-4548.33Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
B8C4D6_THAPS4.190e-4449.07Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10730contigH-elongata_contig10730:718..4630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score353.2
Seed ortholog evalue9e-95
Seed eggNOG ortholog2880.D7FV68
KEGG koko:K11654
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0385@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons5
Model size681
Cds size681
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10730.601.1prot_H-elongata_contig10730.601.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10730 718..4630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929603.2677753-CDS-H-elongata_contig10730:717..7981622929603.2677753-CDS-H-elongata_contig10730:717..798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10730 718..798 +
1691679087.7192461-CDS-H-elongata_contig10730:717..7981691679087.7192461-CDS-H-elongata_contig10730:717..798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10730 718..798 +
1622929603.2831516-CDS-H-elongata_contig10730:1615..17291622929603.2831516-CDS-H-elongata_contig10730:1615..1729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10730 1616..1729 +
1691679087.7345898-CDS-H-elongata_contig10730:1615..17291691679087.7345898-CDS-H-elongata_contig10730:1615..1729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10730 1616..1729 +
1622929603.2991962-CDS-H-elongata_contig10730:2231..23251622929603.2991962-CDS-H-elongata_contig10730:2231..2325Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10730 2232..2325 +
1691679087.7461648-CDS-H-elongata_contig10730:2231..23251691679087.7461648-CDS-H-elongata_contig10730:2231..2325Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10730 2232..2325 +
1622929603.3185298-CDS-H-elongata_contig10730:2849..30221622929603.3185298-CDS-H-elongata_contig10730:2849..3022Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10730 2850..3022 +
1691679087.7549741-CDS-H-elongata_contig10730:2849..30221691679087.7549741-CDS-H-elongata_contig10730:2849..3022Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10730 2850..3022 +
1622929603.335644-CDS-H-elongata_contig10730:4411..46301622929603.335644-CDS-H-elongata_contig10730:4411..4630Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10730 4412..4630 +
1691679087.7640157-CDS-H-elongata_contig10730:4411..46301691679087.7640157-CDS-H-elongata_contig10730:4411..4630Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10730 4412..4630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10730.601.1

>prot_H-elongata_contig10730.601.1 ID=prot_H-elongata_contig10730.601.1|Name=mRNA_H-elongata_contig10730.601.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp
VVERAQQKLKLDAMIVQQGRLAENAKKLGKEQLLDALRFGADKVFRSKDT
SITDADIDAIMEHGKEKTKALMESKLQISDKGDLLDFSLDGGIATQVYEG
VDYSNKANRAEAAGGPVPFQLIDTGKRERKKVPSYKEDNFYRQQQAAAIK
KRTVMPKHLRLPRMDECQFYDKKRLEQLHRREEQLFVEAKDKNLLPSDLN
SYEAREKEREKQREQEEPSEQALLLL*
back to top

mRNA from alignment at H-elongata_contig10730:718..4630+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10730.601.1 ID=mRNA_H-elongata_contig10730.601.1|Name=mRNA_H-elongata_contig10730.601.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3913bp|location=Sequence derived from alignment at H-elongata_contig10730:718..4630+ (Himanthalia elongata Himel1 dioecious)
GTGGTGGAACGGGCCCAGCAGAAGCTAAAGCTGGATGCCATGATCGTTCA GCAGGGCCGCCTCGCCGAAAACGCCAAAAAGGTAATCGTGAAATAGGATT CAACGCTCCCGCCGCGATTTCGCAGGATGCTAGGATCGTCGTGATCGTAG GATCGTAGATCGAATCACGGCTCTTTAGCCTCGCAAGACTAGCCATGCAC GGGCGTACGCACGAGCAAGCGGGACGTTGTGGGGGAAGCGCTGACGGCGC CATTTTTTTTTGTACTCCTATTTAACTGGGTCGATGAGAATTTAAACTAT ACAGTAAACTATACAGTGTACCGGTACTATACCGTGGGTTGTGTATTAAA TACATGAGAGCCCGTGTTTGGGCGGTGTAATGCTATTTTTTTGTCAAGGG GTTAAGGGGCGGCGTAATGCTATTATGGCTCTTCTTTTGGCCCACGTGTT CGATACGTCTTGCCCTGCTATGGCGACAGAGGCCTTTTCATAGAACGGTT TGAACCTTTCCAGGTAACCCTTATTGATAACCTTTATTGGTGCCTTATTC GTGAATTATCGATTGGGGTGGTGTGCTTTTCTTCGGTTCGGTTTTCCGTG GTGATACCCACTTTTACTCGAAGGGGTGTGGATATATTTTTATTTTTATT TAAAAGACTTTAGGCTCATTCTCACTCTCCGAACATCCACACCTTCATTC ACCATAGGTGCAATCCAGGGAACCAACTATCAGAAAGCAGGAATGAGCAG GGACAATATGAATCAGCAGGGGTAAGCATAAACGATGGTAACAATAAGGG ATGAGCAGGAGCAATAGGGATATATTTGCACCCCCTACCTACACACATAG TTTTACCTGTTTGTTGAGCATATGCCTGTGTTCTCCTATATTCTCCAGCT CGGGAAGGAGCAGCTGTTGGACGCGTTGAGATTCGGCGCGGATAAAGTAT TTCGCAGCAAGGACACCTCCATCACGGACGCGGACATCGATGCCATCATG GAGCACGGCAAGGTATTAGTGTCGTGTCTGTGTAATCATTTCTGTTTTCC TCGCCCTCGCGGCTGCGATCGTGAAGGTGGGAGTGTCGAGAGCTTACAGC CACCACCCCCTGTCGAAGAACGCCTAACGCTTTTTATTTTCCCTCCCCGC CTGAGGAGACCGGCCGTGCGACGTCGGTTTTACGCGTGCGCGCGTGTGTG CCGTTGATTAATCGCCGTTCTTGGGCGAGAGAAAATCCCCCCCGCCCCTG GTATCCCAACAGTATCCAGGATGTAACTGACTTGCGGTGTTGACCCTGCT ATCCCAACGCTAACCATCACGCGGGGCGGAAGTCATAGTGGTTTTGGACG TCCAATGCTCAACATAGTGACATAGTGGGGCCTCGTTGGCTGTAACGCTT CGACCTTTTTATGGAGCACAGCACGCGCTTCAACCGAGCCGATCCTATCT GATCCTATTCGATTAAGTGCCGATCCTATTGGACCCTATTCGATGAAATG CCGGCGGGCCGCAGGAGAAAACCAAGGCTCTCATGGAGTCCAAGCTGCAG ATTTCCGACAAGGGAGACCTCTTGGACTTTAGCCTAGATGGGGGCATCGC CACTCAAGGTGATGAGGCGATTCGACGATTGATGCTGTGTGGCGTGGATT TCTTTTCACAGAGTGACGAGACTTCCATGGCTGCCACTTGGTCCGTGCTT TCTATTGATACTTTTACGCAGCTTAATTGAGCGCATGATAGTTGTCAGAT ATTGTGATGGATGGGGTACGTTCGAAGACCGACCACGCCTCTCGTATCGC CGAAGAGGCGGGGGAAAAACAAGCTCAACAAAAAACTGAAGCTAAATCGC ACGAGCCGTACAACATCTTACTGTATTACTGGGAAACCGTTGTATTACTG TATTAATGTATTACCGGTAACAATATACTTGAGGTACGATATATTATAGT ACGGTACTGCAACCTAGTCATAGTCATTCAAAAGTAGCCGAGGATGTGGC GCAACCGCCTTGCGTCCGGTGTGTAAACCGCCTGCTAGATAATATTGGAA CCATTATGCGGTAATCGTCGGCCGGTAACCGCCGCGTAATTGTTTTTGGA CTCGAAACCGGCGGATATTGCTCTCATGCCAGTTTACGAGGGCGTGGACT ACAGCAACAAGGCCAACCGCGCCGAGGCTGCGGGGGGACCGGTGCCGTTT CAATTAATCGACACGGGCAAGAGAGAGCGGAAGAAGGTGCCCTCGTACAA GGAGGACAATTTTTACCGTCAGCAGCAGGCCGCCGCCATCAAAAAGAGGA CCGTGGTGCGTCTATTGTTTATTTAGTTTTGCTTTATTTTGTTCTTGTTC TATTTTTTCTCCTTCCTTTCTCTTGGCCATCTCATTCTTTTCTCCTTTCC GATGAACGCCTGAAGCTCGTCTAGAGTTTCCTTGTCCTTGTCTTTGTCGG GTTGGTTGTCTTGTTGCTCGTCTCGTCGCGTTACGTATACATCACATATT CATTTCGCGGTTGGCCGGGCGTTTTTGTCACGCGCGCGATCGTCCCCTAC CCCCATCCCCTTGTTGACACTTGAAACGATATTGGTAGCGTTTGGTGTGA CATTACCTTCGCTTTGACATACGATAGCTATTAATAACATAACCTTATAT ATATGCATATACATATACATATACTTTCTTTGTATCTCAATTTTTGCCTA TGGGGGGTATATATAGGTTATCAACCCTATTTAACGTGCTAGGTTATCAA CCCCATTTAACGTGCGAGATTACCAACCCCATTTACTGTTACGTTGCCCC ATATACCATCCGTCACCCCTCATCCCATCTACTGCATGTAGTCCGAAGGA ATGTAATAGTATTAACCATGGTATCCATCCATCTCTCCATCTCGCCCCGG TTCACGCCTCCCTACGTTTTTTTCTTTCACGGTGCGAGTTGTGGTCACTC CTCCATATCGTCAACTATACAGTGGTTAAACTTTGTTTAATATACTTATA ATATATAGGACTATAATATACTGTACTGTACTGTACTGTACTGTACTCTC TATTTCTATTACTATTACTATTGCTATTACTACTATTATAGTATATTAAT GACGAGTTAATGATAATGGTAAGTGTTAATGAGCGATTTATTTCGTCTCT CGAGATGACGTTATTTTCGTTTTTCCTGTGTTTCGATAGCGATAACGTCC ATACGATGGCGAGAGAGCGGACGTGATTGCCTTGCTTGGATAGCCACGTT TATATTACTAGTAGGTTATTGATATACATTACAGTATAAAGCTTTACACT ACATTACATTACAGTATAAAGCTGAGATCTCTACATTATAAATACTATGA ACATAATTTTTAGCGTCCTTTTTTCTTAAATGTCATGAGTAGTTGTGTTG TAACAAGGCCGTCGGATCCAGTAGGCAACAATAGAGTCTTAAGTTACTGA GGGGGCACTTTCCCCCGACTTAGGGTGATGCTGGACTGCGCTAGAAAGCT TGCTCATTGCATTGCAGACTCGATTTATAAAGACCTTATAATGTTTATAT ATATATAAATATATATATATATATGTTCATGAAGACTTTATGGGCAATCG TGTAACCCCGCGCGTGAGGTATACTGTTTAATGTGCTGTTTAATGTACTG TCAATGTAACCACCCCCTCCACCTCGGTGATTTTTGGCGTGCAGATGCCG AAGCACTTGAGACTTCCGCGCATGGACGAGTGCCAGTTCTACGACAAGAA GCGGCTGGAGCAGCTACACCGGCGAGAGGAGCAGCTCTTCGTGGAGGCCA AGGACAAGAACTTGCTGCCTTCGGACTTGAACAGCTACGAGGCGAGAGAG AAAGAGAGAGAAAAACAGAGAGAGCAAGAGGAACCAAGCGAGCAAGCATT GTTGTTGTTGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig10730:718..4630+

>mRNA_H-elongata_contig10730.601.1 ID=mRNA_H-elongata_contig10730.601.1|Name=mRNA_H-elongata_contig10730.601.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig10730:718..4630+ (Himanthalia elongata Himel1 dioecious)
GTGGTGGAACGGGCCCAGCAGAAGCTAAAGCTGGATGCCATGATCGTTCA
GCAGGGCCGCCTCGCCGAAAACGCCAAAAAGGTGGTGGAACGGGCCCAGC
AGAAGCTAAAGCTGGATGCCATGATCGTTCAGCAGGGCCGCCTCGCCGAA
AACGCCAAAAAGCTCGGGAAGGAGCAGCTGTTGGACGCGTTGAGATTCGG
CGCGGATAAAGTATTTCGCAGCAAGGACACCTCCATCACGGACGCGGACA
TCGATGCCATCATGGAGCACGGCAAGCTCGGGAAGGAGCAGCTGTTGGAC
GCGTTGAGATTCGGCGCGGATAAAGTATTTCGCAGCAAGGACACCTCCAT
CACGGACGCGGACATCGATGCCATCATGGAGCACGGCAAGGAGAAAACCA
AGGCTCTCATGGAGTCCAAGCTGCAGATTTCCGACAAGGGAGACCTCTTG
GACTTTAGCCTAGATGGGGGCATCGCCACTCAAGGAGAAAACCAAGGCTC
TCATGGAGTCCAAGCTGCAGATTTCCGACAAGGGAGACCTCTTGGACTTT
AGCCTAGATGGGGGCATCGCCACTCAAGTTTACGAGGGCGTGGACTACAG
CAACAAGGCCAACCGCGCCGAGGCTGCGGGGGGACCGGTGCCGTTTCAAT
TAATCGACACGGGCAAGAGAGAGCGGAAGAAGGTGCCCTCGTACAAGGAG
GACAATTTTTACCGTCAGCAGCAGGCCGCCGCCATCAAAAAGAGGACCGT
GTTTACGAGGGCGTGGACTACAGCAACAAGGCCAACCGCGCCGAGGCTGC
GGGGGGACCGGTGCCGTTTCAATTAATCGACACGGGCAAGAGAGAGCGGA
AGAAGGTGCCCTCGTACAAGGAGGACAATTTTTACCGTCAGCAGCAGGCC
GCCGCCATCAAAAAGAGGACCGTGATGCCGAAGCACTTGAGACTTCCGCG
CATGGACGAGTGCCAGTTCTACGACAAGAAGCGGCTGGAGCAGCTACACC
GGCGAGAGGAGCAGCTCTTCGTGGAGGCCAAGGACAAGAACTTGCTGCCT
TCGGACTTGAACAGCTACGAGGCGAGAGAGAAAGAGAGAGAAAAACAGAG
AGAGCAAGAGGAACCAAGCGAGCAAGCATTGTTGTTGTTGTAAATGCCGA
AGCACTTGAGACTTCCGCGCATGGACGAGTGCCAGTTCTACGACAAGAAG
CGGCTGGAGCAGCTACACCGGCGAGAGGAGCAGCTCTTCGTGGAGGCCAA
GGACAAGAACTTGCTGCCTTCGGACTTGAACAGCTACGAGGCGAGAGAGA
AAGAGAGAGAAAAACAGAGAGAGCAAGAGGAACCAAGCGAGCAAGCATTG
TTGTTGTTGTAA
back to top