mRNA_H-elongata_contig20771.5975.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20771.5975.1
Unique NamemRNA_H-elongata_contig20771.5975.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20771.5975.1 vs. uniprot
Match: D7FH95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH95_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 3.810e-14
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 3 
Query:  783 VNVHGYSAEDATRALTICHEIRLLEAAGVGGVAAAEELTRRVLCGGG 923
            + VHGYS EDA RALTICHE+R LEAAGVGGVAAA+ELTRRVLCG G
Sbjct:   12 ITVHGYSPEDARRALTICHEMRTLEAAGVGGVAAAQELTRRVLCGTG 58
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BLAST of mRNA_H-elongata_contig20771.5975.1 vs. uniprot
Match: A0A6H5JP54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP54_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 8.620e-13
Identity = 43/56 (76.79%), Postives = 45/56 (80.36%), Query Frame = 3 
Query:  756 FPSAEFATLVNVHGYSAEDATRALTICHEIRLLEAAGVGGVAAAEELTRRVLCGGG 923
            F   E ATLV VHGYS EDA RALTICHE+R LEAAGVG V AA+ELTRRVLCG G
Sbjct:   56 FSPIELATLVEVHGYSPEDARRALTICHEMRKLEAAGVGRVTAAQELTRRVLCGTG 111
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20771.5975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FH95_ECTSI3.810e-1482.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP54_9PHAE8.620e-1376.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20771contigH-elongata_contig20771:4379..6808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_004550.1
Exons2
Model size1351
Cds size813
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20771.5975.1prot_H-elongata_contig20771.5975.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20771 4379..6272 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930161.1113346-CDS-H-elongata_contig20771:4378..50891622930161.1113346-CDS-H-elongata_contig20771:4378..5089Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20771 4379..5089 -
1691679304.6311085-CDS-H-elongata_contig20771:4378..50891691679304.6311085-CDS-H-elongata_contig20771:4378..5089Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20771 4379..5089 -
1622930161.1227171-CDS-H-elongata_contig20771:6170..62721622930161.1227171-CDS-H-elongata_contig20771:6170..6272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20771 6171..6272 -
1691679304.6404278-CDS-H-elongata_contig20771:6170..62721691679304.6404278-CDS-H-elongata_contig20771:6170..6272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20771 6171..6272 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930161.140272-UTR-H-elongata_contig20771:6272..68081622930161.140272-UTR-H-elongata_contig20771:6272..6808Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20771 6273..6808 -
1691679304.6495826-UTR-H-elongata_contig20771:6272..68081691679304.6495826-UTR-H-elongata_contig20771:6272..6808Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20771 6273..6808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20771.5975.1

>prot_H-elongata_contig20771.5975.1 ID=prot_H-elongata_contig20771.5975.1|Name=mRNA_H-elongata_contig20771.5975.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=271bp
MDDHTCLARAETEFREAVQQEQSALMASGVCCAEATEILLGRLRGNRGKA
SANPSPTNASPSRCASPRLSPPEFPSAEFATLVNVHGYSAEDATRALTIC
HEIRLLEAAGVGGVAAAEELTRRVLCGGGNSAVQGRCTQNPLVQGAARGS
DVGASGTALSRGNDGGAVTGVSGGGRRHSRGAWTSHRSIREEMRADNSSS
SDFLAPPWEPPLQECVNHGAKGVQDGAGGISGGEHILGYPARGGTAGSDP
KGSISMVVAPSPGGRSPRLGG
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mRNA from alignment at H-elongata_contig20771:4379..6808-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20771.5975.1 ID=mRNA_H-elongata_contig20771.5975.1|Name=mRNA_H-elongata_contig20771.5975.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2430bp|location=Sequence derived from alignment at H-elongata_contig20771:4379..6808- (Himanthalia elongata Himel1 dioecious)
CCATAATCGGCTTTTGGAGGAACGTAACCTTTTTTTTTTGGTACAGTAAC
AAGTTGAAGCTTTTGAAGGTCCCTAGTATAGCAACGAGACGAAGGAAAGG
CGGCCAGGCAGGCTCATTTGTTCTCGTGTAACGCGTGTTAATTATTCTCA
CAGAAGTCGAGAATCGAGTGTGCTTCGATATCTGCGTGGTCCAGGACTTT
ACAGCCTGGCTCTCAAGTTCCCACCCTTGCCTGCTTTGCACGACGATTTT
GCGCAACATCGCTCCTGTTGCGTGTGTTTATTTTTTATTTTTGTGAAATC
AAACACTCCTGAAATAACGAGCAATTACATTTATTATTGCAACTCCAACA
CGGAGATCAATATAGATCCCGTGGCTAGTCGTGGTCTATCTGTTGGAGAT
AAAGCACAGGTATCGCTTTCGAAATAATAGGTCTGGGGTACCTTCCATCT
TCAGGGCGCATCAGCCGCGGCGTGATTGTTTTTGTCATCTCTAGGTCATC
ACTGAGAGCCTCGGTTAAGACTGTCCAAATCTCGACATGGATGATCATAC
CTGCTTGGCGAGGGCCGAAACCGAGTTTCGCGAGGCTGTTCAGCAAGAGC
AGTCGGCCCTCATGGCCTCGGGGGTCTGTTGCGCAGAGGTGAGCATTATT
GAGCCTTTCCTAAGAAGAAACCGTATTGAATGAGCTATGATTTCGAATTG
TATTTGCTCGGTTAGGAGTTCCGACTTCGGCGTTCGGCACAGTATAGAGC
CTTTAACAATAAAATAAATCTAGCCAAAGATAGTCCTTGTGGCGCCGTGG
GATGACTGAAAGTGGACAAAAGATCTTGCGGCATCTGCCAAAATGAAATG
TTTTCTCACAGAAAGCAGCCACGCGCTACTGGTTGAAAATAGACAAGCGT
AACCGCTCGAGTACTCAAGGCATACACAAGTCCATGGGTTTTCCAGAGCG
TCAGTGGCGTGGAGGATTTGTGTGCAAGTCACAAGTCCATGGGGTTTCCA
GAGCGTCAGTGGCATGGAGGATTTGTGCGCAAGTCACGGCGGTGTAGCTT
TCTCTCGATACTTAATAGCTTGGCCTCTGATCGTAGTCACGGAGTCTTAC
TAGGCGGGTTATCGTATTGTTTAGCCTTACGAAAGGCGCAGCCGTATCGA
GTGCTTCGGTGATGTCTTTCGGCAGATGGCTTTTTGACGGGCACCCTTTT
GCTAGAAAAAATGGTTGCCCCGGCTGCAACCCCCCTGAACAACAAGCAAA
AAGGTTTGTTCTATGGCGTTTGTACCCCGGCGCATGAAAAAAAGAAGGAA
AACCCCCCCCGCTCGAGCCGACAATTCGGTGAAGGCATTCAGTAACGACA
AGCCTCTCAGTGAGATACGCAAATGAATGAAATCGAGGAGAGGGCCAAGG
CAGCGGGTTGAGGGGGCGGGGGGGCAGGATCGCGCAATAAAGTCTAAAGG
TATAGATGCGGCAAGTTTCGGATTTGCGCTCGCGATATCGCTTTGTCTCG
TTCAACATCTACTCCTTCGCCAAGGTACGGTATCACTACAACTCCACGAA
ACCGTCGAGCGCACCTTTAACGAGTATACATATAGAAATACACAGTTGAA
GGAAGTGAAAGGTCTTCGCCGACTGTAACGGCGCCCGATCATTCAACCCT
TTCCCCGTCACAAACATGCCTGCACGCTCTTGTTGCGGCTGCTTCCACCT
CTTCTGCTTCCGTCCACAGGCCACCGAGATTCTCTTGGGACGACTACGGG
GAAATCGTGGCAAAGCCTCGGCAAACCCTTCTCCTACCAATGCGTCGCCT
TCTAGGTGCGCCAGCCCTCGCCTCTCACCACCGGAATTCCCGTCGGCGGA
GTTCGCGACGCTCGTGAACGTCCACGGCTACTCGGCCGAAGACGCCACGC
GAGCGCTAACGATCTGCCACGAGATCCGTCTCCTGGAGGCGGCCGGCGTC
GGGGGCGTCGCGGCGGCGGAGGAACTGACGAGGCGTGTTCTCTGCGGGGG
TGGGAATTCCGCTGTCCAGGGGCGGTGCACGCAGAACCCGCTGGTACAAG
GGGCGGCTCGAGGGAGCGATGTTGGCGCATCAGGCACAGCATTAAGTCGA
GGAAACGACGGCGGAGCAGTGACCGGAGTTTCAGGCGGAGGGCGAAGACA
TTCACGGGGCGCCTGGACTAGCCACCGATCGATACGGGAAGAAATGAGGG
CAGACAACAGCAGTAGCAGTGACTTCTTGGCACCACCGTGGGAGCCCCCG
CTACAAGAGTGCGTAAATCACGGTGCGAAAGGGGTACAAGACGGGGCGGG
AGGGATATCGGGGGGTGAGCACATTCTTGGCTACCCCGCGCGTGGGGGTA
CCGCGGGGTCGGATCCGAAGGGGTCGATATCGATGGTTGTCGCGCCGTCC
CCGGGAGGACGTTCGCCGCGCCTCGGGGGA
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Coding sequence (CDS) from alignment at H-elongata_contig20771:4379..6808-

>mRNA_H-elongata_contig20771.5975.1 ID=mRNA_H-elongata_contig20771.5975.1|Name=mRNA_H-elongata_contig20771.5975.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1626bp|location=Sequence derived from alignment at H-elongata_contig20771:4379..6808- (Himanthalia elongata Himel1 dioecious)
ATGGATGATCATACCTGCTTGGCGAGGGCCGAAACCGAGTTTCGCGAGGC
TGTTCAGCAAGAGCAGTCGGCCCTCATGGCCTCGGGGGTCTGTTGCGCAG
AGATGGATGATCATACCTGCTTGGCGAGGGCCGAAACCGAGTTTCGCGAG
GCTGTTCAGCAAGAGCAGTCGGCCCTCATGGCCTCGGGGGTCTGTTGCGC
AGAGGCCACCGAGATTCTCTTGGGACGACTACGGGGAAATCGTGGCAAAG
CCTCGGCAAACCCTTCTCCTACCAATGCGTCGCCTTCTAGGTGCGCCAGC
CCTCGCCTCTCACCACCGGAATTCCCGTCGGCGGAGTTCGCGACGCTCGT
GAACGTCCACGGCTACTCGGCCGAAGACGCCACGCGAGCGCTAACGATCT
GCCACGAGATCCGTCTCCTGGAGGCGGCCGGCGTCGGGGGCGTCGCGGCG
GCGGAGGAACTGACGAGGCGTGTTCTCTGCGGGGGTGGGAATTCCGCTGT
CCAGGGGCGGTGCACGCAGAACCCGCTGGTACAAGGGGCGGCTCGAGGGA
GCGATGTTGGCGCATCAGGCACAGCATTAAGTCGAGGAAACGACGGCGGA
GCAGTGACCGGAGTTTCAGGCGGAGGGCGAAGACATTCACGGGGCGCCTG
GACTAGCCACCGATCGATACGGGAAGAAATGAGGGCAGACAACAGCAGTA
GCAGTGACTTCTTGGCACCACCGTGGGAGCCCCCGCTACAAGAGTGCGTA
AATCACGGTGCGAAAGGGGTACAAGACGGGGCGGGAGGGATATCGGGGGG
TGAGCACATTCTTGGCTACCCCGCGCGTGGGGGTACCGCGGGGTCGGATC
CGAAGGGGTCGATATCGATGGTTGTCGCGCCGTCCCCGGGAGGACGTTCG
CCGCGCCTCGGGGGAGCCACCGAGATTCTCTTGGGACGACTACGGGGAAA
TCGTGGCAAAGCCTCGGCAAACCCTTCTCCTACCAATGCGTCGCCTTCTA
GGTGCGCCAGCCCTCGCCTCTCACCACCGGAATTCCCGTCGGCGGAGTTC
GCGACGCTCGTGAACGTCCACGGCTACTCGGCCGAAGACGCCACGCGAGC
GCTAACGATCTGCCACGAGATCCGTCTCCTGGAGGCGGCCGGCGTCGGGG
GCGTCGCGGCGGCGGAGGAACTGACGAGGCGTGTTCTCTGCGGGGGTGGG
AATTCCGCTGTCCAGGGGCGGTGCACGCAGAACCCGCTGGTACAAGGGGC
GGCTCGAGGGAGCGATGTTGGCGCATCAGGCACAGCATTAAGTCGAGGAA
ACGACGGCGGAGCAGTGACCGGAGTTTCAGGCGGAGGGCGAAGACATTCA
CGGGGCGCCTGGACTAGCCACCGATCGATACGGGAAGAAATGAGGGCAGA
CAACAGCAGTAGCAGTGACTTCTTGGCACCACCGTGGGAGCCCCCGCTAC
AAGAGTGCGTAAATCACGGTGCGAAAGGGGTACAAGACGGGGCGGGAGGG
ATATCGGGGGGTGAGCACATTCTTGGCTACCCCGCGCGTGGGGGTACCGC
GGGGTCGGATCCGAAGGGGTCGATATCGATGGTTGTCGCGCCGTCCCCGG
GAGGACGTTCGCCGCGCCTCGGGGGA
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