mRNA_H-elongata_contig207618.5968.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig207618.5968.1 vs. uniprot
Match: D7FRI0_ECTSI (M20_dimer domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRI0_ECTSI) HSP 1 Score: 119 bits (298), Expect = 4.760e-30 Identity = 54/67 (80.60%), Postives = 63/67 (94.03%), Query Frame = 1
Query: 19 RSFTPATRSKPDTPLWRAMEKAASNIIKGATLVPVMLPGATDCRFYRGLGGAVAYGANLLEPSLTFG 219
+S PA+RS+PDTPLW+AMEKAAS +IKGA+LVPVMLPG TDCR+YRG+GGAVAYGANLLEPS+TFG
Sbjct: 385 QSHIPASRSEPDTPLWKAMEKAASAVIKGASLVPVMLPGGTDCRYYRGIGGAVAYGANLLEPSMTFG 451
BLAST of mRNA_H-elongata_contig207618.5968.1 vs. uniprot
Match: A0A835YY18_9STRA (M20_dimer domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY18_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 2.940e-11 Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 25 FTPATRSKPDTPLWRAMEKAASNIIKGATLVPVMLPGATDCRFYRGLGGAV-AYGANLLEPSLTF 216
F A+RS DTP+W A+E+AAS + GA +PVMLPGATD RF+R GG AYG LL F
Sbjct: 423 FEMASRSPFDTPMWHAIEQAASTLFPGAKCIPVMLPGATDNRFFREHGGTRGAYGTGLLHLKFQF 487
BLAST of mRNA_H-elongata_contig207618.5968.1 vs. uniprot
Match: A0A7W0R051_9ACTN (M20/M25/M40 family metallo-hydrolase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0R051_9ACTN) HSP 1 Score: 61.6 bits (148), Expect = 2.300e-9 Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query: 34 ATRSKPDTPLWRAMEKAASNIIKGATLVPVMLPGATDCRFYRGLGGAVAYGANLLEPSLT 213
ATRS D PLW A+ A GA LVP ++ G TD RFYR L G++AYGA L PS+T
Sbjct: 354 ATRSPIDNPLWEALATNAQVAYPGAELVPGIIVGGTDARFYR-LKGSIAYGAGLFSPSVT 412
BLAST of mRNA_H-elongata_contig207618.5968.1 vs. uniprot
Match: A0A7Y2IFP1_9ACTN (M20/M25/M40 family metallo-hydrolase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IFP1_9ACTN) HSP 1 Score: 59.7 bits (143), Expect = 1.100e-8 Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 31 PATRSKPDTPLWRAMEKAASNIIKGATLVPVMLPGATDCRFYRGLGGAVAYGANLLEPSLT 213
PAT S D PLW A+EKA + TLVP ++ G TD RF+R GA+A+GA LL P ++
Sbjct: 349 PATASPTDNPLWSALEKAMARPYPELTLVPSLVTGGTDSRFFR-QKGAIAFGAGLLSPQVS 408
BLAST of mRNA_H-elongata_contig207618.5968.1 vs. uniprot
Match: A0A538AZF4_9ACTN (M20/M25/M40 family metallo-hydrolase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538AZF4_9ACTN) HSP 1 Score: 59.3 bits (142), Expect = 1.500e-8 Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1
Query: 22 SFTPATRSKPDTPLWRAMEKAASNIIKGATLVPVMLPGATDCRFYRGLGGAVAYGANLLEPSLTF 216
S PAT S +TPLW ++++ ++ G+T++P ++ GATD RF+R G AYGA L ++F
Sbjct: 348 SNDPATASPVETPLWDSIQRVTEGLVPGSTIIPFIIVGATDARFFR-RAGMTAYGAGLFSDRISF 411
BLAST of mRNA_H-elongata_contig207618.5968.1 vs. uniprot
Match: UPI002006AE46 (M20/M25/M40 family metallo-hydrolase n=1 Tax=Aciditerrimonas ferrireducens TaxID=667306 RepID=UPI002006AE46) HSP 1 Score: 57.4 bits (137), Expect = 7.180e-8 Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 1
Query: 19 RSFTPATRSKPDTPLWRAMEKAASNIIKGATLVPVMLPGATDCRFYRGLGGAVAYGANLLEPSLTFG 219
R P + S DTPLW A+ ++A I+ G+ L+P ++ G TD RF+R LG AYG L L G
Sbjct: 350 RHRDPGSESPTDTPLWHALARSAQQIVPGSELLPFLVAGGTDSRFFRALG-VPAYGFGLFSERLPLG 415
BLAST of mRNA_H-elongata_contig207618.5968.1 vs. uniprot
Match: UPI001A257FDD (M20/M25/M40 family metallo-hydrolase n=1 Tax=Candidatus Dormibacteraeota bacterium TaxID=2052315 RepID=UPI001A257FDD) HSP 1 Score: 57.0 bits (136), Expect = 9.800e-8 Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 1
Query: 37 TRSKPDTPLWRAMEKAASNIIKGATLVPVMLPGATDCRFYRGLGGAVAYGANLLEPSLT 213
T S+ DTPLW A+ +AA+++ AT +P ML G TD RF+R LG AYG L ++T
Sbjct: 350 TESEVDTPLWDAINRAATDVYPEATCIPSMLTGGTDARFFRSLG-IPAYGMGLYSRAMT 407
BLAST of mRNA_H-elongata_contig207618.5968.1 vs. uniprot
Match: A0A7V8YMH5_9ACTN (Peptidase dimerization domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V8YMH5_9ACTN) HSP 1 Score: 55.1 bits (131), Expect = 1.040e-7 Identity = 25/62 (40.32%), Postives = 36/62 (58.06%), Query Frame = 1
Query: 31 PATRSKPDTPLWRAMEKAASNIIKGATLVPVMLPGATDCRFYRGLGGAVAYGANLLEPSLTF 216
P T S DTPLW +E+ + ++K + LVP M+ G TD R++R G+V YG L + F
Sbjct: 51 PPTASPTDTPLWECLERVSGKLVKDSALVPFMMVGGTDNRYFR-RAGSVGYGFGLFSKRIGF 111
BLAST of mRNA_H-elongata_contig207618.5968.1 vs. uniprot
Match: A0A7C7TA88_9ACTN (M20/M25/M40 family metallo-hydrolase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7C7TA88_9ACTN) HSP 1 Score: 56.2 bits (134), Expect = 1.830e-7 Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 1
Query: 31 PATRSKPDTPLWRAMEKAASNIIKGATLVPVMLPGATDCRFYRGLGGAVAYGANLLEPSLT 213
PAT S DTP+WR +++ GA L+P ++ GATD RFYR G ++AYGA L +
Sbjct: 355 PATFSSTDTPMWRLLQELMQKAHPGAPLIPSLIVGATDARFYREKG-SIAYGAGLFSDRVN 414
BLAST of mRNA_H-elongata_contig207618.5968.1 vs. uniprot
Match: A0A7Y2INQ7_9ACTN (M20/M25/M40 family metallo-hydrolase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y2INQ7_9ACTN) HSP 1 Score: 55.8 bits (133), Expect = 2.260e-7 Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 1
Query: 31 PATRSKPDTPLWRAMEKAASNIIKGATLVPVMLPGATDCRFYRGLGGAVAYGANLLEPSLTFG 219
PAT S+P PLW A+ +A + +L+P ++P ATD RF+R G VAYG + + +L+FG
Sbjct: 208 PATGSEPRGPLWEAIADSAEALSGSRSLLPCLIPVATDARFFRH-DGVVAYGVGMFDDALSFG 269 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207618.5968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig207618.5968.1 >prot_H-elongata_contig207618.5968.1 ID=prot_H-elongata_contig207618.5968.1|Name=mRNA_H-elongata_contig207618.5968.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp MVFDPDRSFTPATRSKPDTPLWRAMEKAASNIIKGATLVPVMLPGATDCRback to top mRNA from alignment at H-elongata_contig207618:713..934- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig207618.5968.1 ID=mRNA_H-elongata_contig207618.5968.1|Name=mRNA_H-elongata_contig207618.5968.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig207618:713..934- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig207618:713..934- >mRNA_H-elongata_contig207618.5968.1 ID=mRNA_H-elongata_contig207618.5968.1|Name=mRNA_H-elongata_contig207618.5968.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig207618:713..934- (Himanthalia elongata Himel1 dioecious)back to top |