mRNA_H-elongata_contig207582.5965.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207582.5965.1
Unique NamemRNA_H-elongata_contig207582.5965.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig207582.5965.1 vs. uniprot
Match: D8LC19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC19_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.640e-19
Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    1 WRQPSPPPHLRNRQLAFRVELNPPDSTYVGGGGVVLGSMGRTVTPGMGNALILPAKLRQEQGSSELGPRSRSVLVGSLTVKGRDPWQRFIS 273
            + +P P  H+R  QLA RVEL+PP+S YVGGGGV L SMG+T+TPGMG+ L+LPAKL +  GS+      RSV+VG L       W   +S
Sbjct:  108 YHEPPPVAHVRQGQLALRVELDPPESKYVGGGGVRLESMGKTITPGMGSGLVLPAKLSRLVGSA-----CRSVIVGGLRYISHTAWLAVVS 193
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207582.5965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC19_ECTSI1.640e-1951.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207582contigH-elongata_contig207582:306..931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_004110.1
Exons2
Model size450
Cds size450
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930160.2278318-CDS-H-elongata_contig207582:305..5761622930160.2278318-CDS-H-elongata_contig207582:305..576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207582 306..576 -
1691679304.3548782-CDS-H-elongata_contig207582:305..5761691679304.3548782-CDS-H-elongata_contig207582:305..576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207582 306..576 -
1622930160.2438104-CDS-H-elongata_contig207582:752..9311622930160.2438104-CDS-H-elongata_contig207582:752..931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207582 753..931 -
1691679304.3727636-CDS-H-elongata_contig207582:752..9311691679304.3727636-CDS-H-elongata_contig207582:752..931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207582 753..931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207582.5965.1prot_H-elongata_contig207582.5965.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207582 306..931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207582.5965.1

>prot_H-elongata_contig207582.5965.1 ID=prot_H-elongata_contig207582.5965.1|Name=mRNA_H-elongata_contig207582.5965.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
WRQPSPPPHLRNRQLAFRVELNPPDSTYVGGGGVVLGSMGRTVTPGMGNA
LILPAKLRQEQGSSELGPRSRSVLVGSLTVKGRDPWQRFISIWRLWGLLS
RQVRYVADKRLASSGVDTIPTLEPDPEVALEMEGTERSSPKVEVEKLEF*
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mRNA from alignment at H-elongata_contig207582:306..931-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207582.5965.1 ID=mRNA_H-elongata_contig207582.5965.1|Name=mRNA_H-elongata_contig207582.5965.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=626bp|location=Sequence derived from alignment at H-elongata_contig207582:306..931- (Himanthalia elongata Himel1 dioecious)
TGGCGACAGCCGTCCCCGCCGCCGCATCTCAGGAATCGCCAACTAGCGTT
TCGCGTGGAGCTGAATCCCCCAGATAGCACATACGTAGGAGGTGGCGGTG
TCGTTCTCGGATCAATGGGCCGAACCGTTACACCAGGGATGGGAAATGCG
CTAATTCTTCCAGCGAAGCTCAGGCAAGAGTGGCAGGGTCTGCGGCGAAG
GGTTATGGAGATTTATAGTATCTGGGACAAGGGAAATAATCATAGTACGT
TATCAACAAATGCGACTCACCACATTGACACATCTCCTCGACGACCTCCA
CCTCTCTCCCTTCCGCCCCCTCTCATCGCTAAACTCCCTCTCCGTTCGAT
TGCAGGCAAGGAAGCAGCGAGCTGGGTCCGCGCTCCCGGTCGGTGCTAGT
CGGATCGTTGACTGTAAAAGGTCGGGATCCTTGGCAACGCTTCATCAGTA
TATGGCGTCTCTGGGGACTTCTCTCGCGACAGGTTCGATATGTGGCAGAC
AAGCGACTGGCGTCTTCTGGGGTAGACACTATCCCGACATTGGAGCCCGA
TCCTGAGGTGGCGCTGGAAATGGAGGGCACAGAGAGATCATCCCCGAAGG
TAGAGGTGGAAAAGCTGGAGTTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig207582:306..931-

>mRNA_H-elongata_contig207582.5965.1 ID=mRNA_H-elongata_contig207582.5965.1|Name=mRNA_H-elongata_contig207582.5965.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig207582:306..931- (Himanthalia elongata Himel1 dioecious)
TGGCGACAGCCGTCCCCGCCGCCGCATCTCAGGAATCGCCAACTAGCGTT
TCGCGTGGAGCTGAATCCCCCAGATAGCACATACGTAGGAGGTGGCGGTG
TCGTTCTCGGATCAATGGGCCGAACCGTTACACCAGGGATGGGAAATGCG
CTAATTCTTCCAGCGAAGCTCAGGCAAGATGGCGACAGCCGTCCCCGCCG
CCGCATCTCAGGAATCGCCAACTAGCGTTTCGCGTGGAGCTGAATCCCCC
AGATAGCACATACGTAGGAGGTGGCGGTGTCGTTCTCGGATCAATGGGCC
GAACCGTTACACCAGGGATGGGAAATGCGCTAATTCTTCCAGCGAAGCTC
AGGCAAGAGCAAGGAAGCAGCGAGCTGGGTCCGCGCTCCCGGTCGGTGCT
AGTCGGATCGTTGACTGTAAAAGGTCGGGATCCTTGGCAACGCTTCATCA
GTATATGGCGTCTCTGGGGACTTCTCTCGCGACAGGTTCGATATGTGGCA
GACAAGCGACTGGCGTCTTCTGGGGTAGACACTATCCCGACATTGGAGCC
CGATCCTGAGGTGGCGCTGGAAATGGAGGGCACAGAGAGATCATCCCCGA
AGGTAGAGGTGGAAAAGCTGGAGTTTTGAGCAAGGAAGCAGCGAGCTGGG
TCCGCGCTCCCGGTCGGTGCTAGTCGGATCGTTGACTGTAAAAGGTCGGG
ATCCTTGGCAACGCTTCATCAGTATATGGCGTCTCTGGGGACTTCTCTCG
CGACAGGTTCGATATGTGGCAGACAAGCGACTGGCGTCTTCTGGGGTAGA
CACTATCCCGACATTGGAGCCCGATCCTGAGGTGGCGCTGGAAATGGAGG
GCACAGAGAGATCATCCCCGAAGGTAGAGGTGGAAAAGCTGGAGTTTTGA
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