mRNA_H-elongata_contig207543.5962.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207543.5962.1
Unique NamemRNA_H-elongata_contig207543.5962.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig207543.5962.1 vs. uniprot
Match: D8LSW8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSW8_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 2.010e-24
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:    1 TRATADFLRRQRRLAVLDGNDASEGIILTCGQHRATKVGPSLYGSARAMVPVLRNR 168
            TRATADFLRRQ+RLAVLDG+DA EGI+LTCG HRATKVGPSLY SARAMVPVLRNR
Sbjct:  583 TRATADFLRRQQRLAVLDGHDACEGIVLTCGHHRATKVGPSLYSSARAMVPVLRNR 638
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BLAST of mRNA_H-elongata_contig207543.5962.1 vs. uniprot
Match: A0A836CEG7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEG7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.630e-13
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 TRATADFLRRQRRLAVLDGNDASEGIILTCGQHRATKVGPS-LYGSARAMVPVLRNR 168
            +R TA+FLR Q RLAVL+G+ A++GI LTCG H A K G + LY S RAMVPVLRNR
Sbjct:   95 SRLTAEFLRSQARLAVLNGHAAADGISLTCGHHCAAKTGTAQLYSSVRAMVPVLRNR 151
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BLAST of mRNA_H-elongata_contig207543.5962.1 vs. uniprot
Match: A0A5D6YDA5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDA5_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 4.850e-5
Identity = 26/58 (44.83%), Postives = 33/58 (56.90%), Query Frame = 1 
Query:   28 RQRRLAVLDGN-----------DASEGIILTCGQHRATKVGPSLYGSARAMVPVLRNR 168
            RQ R A L G            D +E I L+CG+H ATKVGP +Y S RA VP+ ++R
Sbjct:  287 RQERAATLTGERLLHVPRFNVQDCNEEIYLSCGKHCATKVGPGMYRSVRATVPIPKHR 344
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207543.5962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSW8_ECTSI2.010e-2489.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CEG7_9STRA3.630e-1364.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5D6YDA5_9STRA4.850e-544.83Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207543contigH-elongata_contig207543:440..610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue1.8e-20
Seed eggNOG ortholog2880.D8LSW8
EggNOG OGs2BAEZ@1,2S0VK@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930159.9862776-CDS-H-elongata_contig207543:439..6101622930159.9862776-CDS-H-elongata_contig207543:439..610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207543 440..610 +
1691679304.2400172-CDS-H-elongata_contig207543:439..6101691679304.2400172-CDS-H-elongata_contig207543:439..610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207543 440..610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207543.5962.1prot_H-elongata_contig207543.5962.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207543 440..610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207543.5962.1

>prot_H-elongata_contig207543.5962.1 ID=prot_H-elongata_contig207543.5962.1|Name=mRNA_H-elongata_contig207543.5962.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
TRATADFLRRQRRLAVLDGNDASEGIILTCGQHRATKVGPSLYGSARAMV
PVLRNR*
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mRNA from alignment at H-elongata_contig207543:440..610+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207543.5962.1 ID=mRNA_H-elongata_contig207543.5962.1|Name=mRNA_H-elongata_contig207543.5962.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig207543:440..610+ (Himanthalia elongata Himel1 dioecious)
ACTCGTGCAACGGCGGACTTCCTGCGGAGACAGCGTCGGCTGGCGGTGCT
GGACGGTAACGACGCCTCGGAGGGCATCATCCTCACGTGCGGACAGCACC
GCGCCACCAAGGTTGGACCTTCCCTCTACGGCTCCGCGCGCGCGATGGTC
CCTGTCCTTCGCAACAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig207543:440..610+

>mRNA_H-elongata_contig207543.5962.1 ID=mRNA_H-elongata_contig207543.5962.1|Name=mRNA_H-elongata_contig207543.5962.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig207543:440..610+ (Himanthalia elongata Himel1 dioecious)
ACTCGTGCAACGGCGGACTTCCTGCGGAGACAGCGTCGGCTGGCGGTGCT
GGACGGTAACGACGCCTCGGAGGGCATCATCCTCACGTGCGGACAGCACC
GCGCCACCAAGGTTGGACCTTCCCTCTACGGCTCCGCGCGCGCGATGGTC
CCTGTCCTTCGCAACAGGTGAACTCGTGCAACGGCGGACTTCCTGCGGAG
ACAGCGTCGGCTGGCGGTGCTGGACGGTAACGACGCCTCGGAGGGCATCA
TCCTCACGTGCGGACAGCACCGCGCCACCAAGGTTGGACCTTCCCTCTAC
GGCTCCGCGCGCGCGATGGTCCCTGTCCTTCGCAACAGGTGA
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