mRNA_H-elongata_contig207268.5945.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207268.5945.1
Unique NamemRNA_H-elongata_contig207268.5945.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig207268.5945.1 vs. uniprot
Match: D8LS62_ECTSI (Histone methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS62_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 2.630e-44
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 1
Query:   25 QDTVIDATFKGSLARFINHSCDPSCTTRIIAVEGSKKIVIYAERDIAMGEELFYDYKFPLEVDESARVPCHCGSEKCRGFIN 270
            +DTV+DATFKGSLARFINHSCDPSCTTRII VEGSKKIVIYAERD+AMGEEL YDYKFP E DE+ARVPCHCGSEKCRGFIN
Sbjct: 1986 EDTVVDATFKGSLARFINHSCDPSCTTRIITVEGSKKIVIYAERDVAMGEELSYDYKFPPEPDEAARVPCHCGSEKCRGFIN 2067          
BLAST of mRNA_H-elongata_contig207268.5945.1 vs. uniprot
Match: A0A835Z6D9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6D9_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.060e-38
Identity = 59/81 (72.84%), Postives = 70/81 (86.42%), Query Frame = 1
Query:   25 QDTVIDATFKGSLARFINHSCDPSCTTRIIAVEGSKKIVIYAERDIAMGEELFYDYKFPLEVDESARVPCHCGSEKCRGFI 267
            +DTV+DATFKGSLARF+NHSCDP+C T+II V+G KKI+IYA+R IA GEEL YDYKFPLE  E  RVPCHCG+ KCRG++
Sbjct:   88 EDTVVDATFKGSLARFVNHSCDPNCYTQIIVVDGVKKIIIYAKRAIATGEELSYDYKFPLEEKEEERVPCHCGAAKCRGYM 168          
BLAST of mRNA_H-elongata_contig207268.5945.1 vs. uniprot
Match: A0A1Y1XK86_9FUNG (Histone methyltransferase (Fragment) n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1XK86_9FUNG)

HSP 1 Score: 120 bits (301), Expect = 5.240e-33
Identity = 55/90 (61.11%), Postives = 69/90 (76.67%), Query Frame = 1
Query:    1 SSRACTLRQDTVIDATFKGSLARFINHSCDPSCTTRIIAVEGSKKIVIYAERDIAMGEELFYDYKFPLEVDESARVPCHCGSEKCRGFIN 270
            SS    +  DT+IDAT KG+LARFINH CDP+C  +II V+G KKIVIYA+RDI  GEE+ YDYKFP+EVD   ++PC CG++ CRG +N
Sbjct:   64 SSYLFRIDDDTIIDATKKGNLARFINHCCDPNCNAKIITVDGHKKIVIYAKRDIEEGEEITYDYKFPIEVD---KIPCLCGAKNCRGSLN 150          
BLAST of mRNA_H-elongata_contig207268.5945.1 vs. uniprot
Match: A0A1Y2D987_9FUNG (SET domain-containing protein (Fragment) n=4 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y2D987_9FUNG)

HSP 1 Score: 120 bits (302), Expect = 2.440e-32
Identity = 56/90 (62.22%), Postives = 69/90 (76.67%), Query Frame = 1
Query:    1 SSRACTLRQDTVIDATFKGSLARFINHSCDPSCTTRIIAVEGSKKIVIYAERDIAMGEELFYDYKFPLEVDESARVPCHCGSEKCRGFIN 270
            SS    +  DTVIDAT KG+LARFINH CDP+C  +II V+G KKIVIYA+RDI  GEE+ YDYKFP+EVD   ++PC CG++ CRG +N
Sbjct:  133 SSYLFRIDDDTVIDATKKGNLARFINHCCDPNCNAKIITVDGHKKIVIYAKRDIEEGEEITYDYKFPIEVD---KIPCLCGAKNCRGSLN 219          
BLAST of mRNA_H-elongata_contig207268.5945.1 vs. uniprot
Match: B8PLS4_POSPM (Predicted protein n=2 Tax=Polyporales TaxID=5303 RepID=B8PLS4_POSPM)

HSP 1 Score: 117 bits (292), Expect = 4.400e-32
Identity = 52/90 (57.78%), Postives = 67/90 (74.44%), Query Frame = 1
Query:    1 SSRACTLRQDTVIDATFKGSLARFINHSCDPSCTTRIIAVEGSKKIVIYAERDIAMGEELFYDYKFPLEVDESARVPCHCGSEKCRGFIN 270
            SS    + +D V+DAT KG+L R INHSCDP+CT +II + G KKIVIYA++DI +G E+ YDY FP+E D   ++PC CGS KCRGF+N
Sbjct:   29 SSYLFRIDEDLVVDATKKGNLGRLINHSCDPNCTAKIITINGEKKIVIYAKQDIELGSEITYDYHFPIEQD---KIPCLCGSAKCRGFLN 115          
BLAST of mRNA_H-elongata_contig207268.5945.1 vs. uniprot
Match: A0A7S2MN45_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MN45_9STRA)

HSP 1 Score: 117 bits (292), Expect = 4.670e-32
Identity = 48/80 (60.00%), Postives = 66/80 (82.50%), Query Frame = 1
Query:   31 TVIDATFKGSLARFINHSCDPSCTTRIIAVEGSKKIVIYAERDIAMGEELFYDYKFPLEVDESARVPCHCGSEKCRGFIN 270
            TVIDAT +GSLAR++NHSCDP+C T+I+     KKI++Y++R IA GEEL YDYKF ++ DESA++ C CG+E+CRG++N
Sbjct:   38 TVIDATKRGSLARYVNHSCDPNCFTQIVEYSAQKKILLYSKRSIAFGEELSYDYKFAIDPDESAKIACMCGAERCRGYLN 117          
BLAST of mRNA_H-elongata_contig207268.5945.1 vs. uniprot
Match: K5X633_AGABU (Uncharacterized protein n=2 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=K5X633_AGABU)

HSP 1 Score: 116 bits (290), Expect = 3.540e-31
Identity = 52/90 (57.78%), Postives = 67/90 (74.44%), Query Frame = 1
Query:    1 SSRACTLRQDTVIDATFKGSLARFINHSCDPSCTTRIIAVEGSKKIVIYAERDIAMGEELFYDYKFPLEVDESARVPCHCGSEKCRGFIN 270
            SS    + +D V+DAT KG+L R INHSCDP+CT +II + G KKIVIYA++DI +G+E+ YDY FP E D   ++PC CGS KCRGF+N
Sbjct:   77 SSYLFRIDEDLVVDATKKGNLGRLINHSCDPNCTAKIITISGVKKIVIYAKQDIELGDEITYDYHFPFEQD---KIPCLCGSAKCRGFLN 163          
BLAST of mRNA_H-elongata_contig207268.5945.1 vs. uniprot
Match: L0PBG5_PNEJ8 (Histone-lysine N-methyltransferase, H3 lysine-4 specific n=1 Tax=Pneumocystis jirovecii (strain SE8) TaxID=1209962 RepID=L0PBG5_PNEJ8)

HSP 1 Score: 121 bits (303), Expect = 4.480e-31
Identity = 56/90 (62.22%), Postives = 68/90 (75.56%), Query Frame = 1
Query:    1 SSRACTLRQDTVIDATFKGSLARFINHSCDPSCTTRIIAVEGSKKIVIYAERDIAMGEELFYDYKFPLEVDESARVPCHCGSEKCRGFIN 270
            SS    +  DTV+DAT KG++ARFINHSCDPSCT +II VEG KKIVIYA RDI  GEE+ YDYKFP+E     ++PC CG++ CRG +N
Sbjct:  289 SSYLFRIDDDTVVDATKKGNIARFINHSCDPSCTAKIIRVEGEKKIVIYAHRDIEKGEEITYDYKFPIE---DVKIPCLCGAKACRGTLN 375          
BLAST of mRNA_H-elongata_contig207268.5945.1 vs. uniprot
Match: D8Q7M2_SCHCM (Uncharacterized protein n=14 Tax=Agaricomycetes TaxID=155619 RepID=D8Q7M2_SCHCM)

HSP 1 Score: 115 bits (289), Expect = 6.260e-31
Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 1
Query:    1 SSRACTLRQDTVIDATFKGSLARFINHSCDPSCTTRIIAVEGSKKIVIYAERDIAMGEELFYDYKFPLEVDESARVPCHCGSEKCRGFIN 270
            SS    + ++ V+DAT KG+L R INHSCDP+CT +II + G KKIVIYA+RDI +G+E+ YDY FP E D   ++PC CG+ KCRGF+N
Sbjct:   85 SSYLFRIDEEIVVDATKKGNLGRLINHSCDPNCTAKIITINGEKKIVIYAKRDIELGDEITYDYHFPFEQD---KIPCLCGTAKCRGFLN 171          
BLAST of mRNA_H-elongata_contig207268.5945.1 vs. uniprot
Match: A0A067NXT8_PLEOS (Uncharacterized protein n=2 Tax=Pleurotus ostreatus TaxID=5322 RepID=A0A067NXT8_PLEOS)

HSP 1 Score: 116 bits (291), Expect = 8.150e-31
Identity = 51/90 (56.67%), Postives = 68/90 (75.56%), Query Frame = 1
Query:    1 SSRACTLRQDTVIDATFKGSLARFINHSCDPSCTTRIIAVEGSKKIVIYAERDIAMGEELFYDYKFPLEVDESARVPCHCGSEKCRGFIN 270
            SS    + +D V+DAT KG+L R INHSCDP+CT +II + G KKIVIYA++DI +G+E+ YDY FP+E D   ++PC CGS KCRG++N
Sbjct:  121 SSYLFRIDEDLVVDATKKGNLGRLINHSCDPNCTAKIITINGEKKIVIYAKQDIELGDEITYDYHFPIEQD---KIPCLCGSAKCRGYLN 207          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207268.5945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS62_ECTSI2.630e-4490.24Histone methyltransferase n=2 Tax=Ectocarpus TaxID... [more]
A0A835Z6D9_9STRA1.060e-3872.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Y1XK86_9FUNG5.240e-3361.11Histone methyltransferase (Fragment) n=1 Tax=Anaer... [more]
A0A1Y2D987_9FUNG2.440e-3262.22SET domain-containing protein (Fragment) n=4 Tax=N... [more]
B8PLS4_POSPM4.400e-3257.78Predicted protein n=2 Tax=Polyporales TaxID=5303 R... [more]
A0A7S2MN45_9STRA4.670e-3260.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K5X633_AGABU3.540e-3157.78Uncharacterized protein n=2 Tax=Agaricus bisporus ... [more]
L0PBG5_PNEJ84.480e-3162.22Histone-lysine N-methyltransferase, H3 lysine-4 sp... [more]
D8Q7M2_SCHCM6.260e-3156.67Uncharacterized protein n=14 Tax=Agaricomycetes Ta... [more]
A0A067NXT8_PLEOS8.150e-3156.67Uncharacterized protein n=2 Tax=Pleurotus ostreatu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207268contigH-elongata_contig207268:664..936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.2
Seed ortholog evalue1.2e-37
Seed eggNOG ortholog2880.D8LS62
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K11422
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,map00310
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1080@2759
EC2.1.1.43
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930158.2154388-CDS-H-elongata_contig207268:663..9361622930158.2154388-CDS-H-elongata_contig207268:663..936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207268 664..936 -
1691679303.3055446-CDS-H-elongata_contig207268:663..9361691679303.3055446-CDS-H-elongata_contig207268:663..936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207268 664..936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207268.5945.1prot_H-elongata_contig207268.5945.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207268 664..936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207268.5945.1

>prot_H-elongata_contig207268.5945.1 ID=prot_H-elongata_contig207268.5945.1|Name=mRNA_H-elongata_contig207268.5945.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
SSRACTLRQDTVIDATFKGSLARFINHSCDPSCTTRIIAVEGSKKIVIYA
ERDIAMGEELFYDYKFPLEVDESARVPCHCGSEKCRGFIN*
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mRNA from alignment at H-elongata_contig207268:664..936-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207268.5945.1 ID=mRNA_H-elongata_contig207268.5945.1|Name=mRNA_H-elongata_contig207268.5945.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=273bp|location=Sequence derived from alignment at H-elongata_contig207268:664..936- (Himanthalia elongata Himel1 dioecious)
TCTTCGCGTGCTTGCACGCTACGGCAGGACACGGTCATCGACGCGACGTT CAAGGGAAGCCTGGCGCGCTTTATCAACCACAGCTGTGACCCCTCCTGCA CGACGCGCATAATCGCGGTAGAAGGTAGCAAGAAGATCGTCATCTATGCC GAGCGGGACATCGCCATGGGGGAGGAGCTCTTCTACGACTATAAGTTCCC GCTGGAGGTCGATGAGTCGGCCCGCGTACCATGCCATTGTGGTTCTGAGA AGTGCCGTGGCTTCATCAACTAG
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Coding sequence (CDS) from alignment at H-elongata_contig207268:664..936-

>mRNA_H-elongata_contig207268.5945.1 ID=mRNA_H-elongata_contig207268.5945.1|Name=mRNA_H-elongata_contig207268.5945.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig207268:664..936- (Himanthalia elongata Himel1 dioecious)
TCTTCGCGTGCTTGCACGCTACGGCAGGACACGGTCATCGACGCGACGTT
CAAGGGAAGCCTGGCGCGCTTTATCAACCACAGCTGTGACCCCTCCTGCA
CGACGCGCATAATCGCGGTAGAAGGTAGCAAGAAGATCGTCATCTATGCC
GAGCGGGACATCGCCATGGGGGAGGAGCTCTTCTACGACTATAAGTTCCC
GCTGGAGGTCGATGAGTCGGCCCGCGTACCATGCCATTGTGGTTCTGAGA
AGTGCCGTGGCTTCATCAACTAGTCTTCGCGTGCTTGCACGCTACGGCAG
GACACGGTCATCGACGCGACGTTCAAGGGAAGCCTGGCGCGCTTTATCAA
CCACAGCTGTGACCCCTCCTGCACGACGCGCATAATCGCGGTAGAAGGTA
GCAAGAAGATCGTCATCTATGCCGAGCGGGACATCGCCATGGGGGAGGAG
CTCTTCTACGACTATAAGTTCCCGCTGGAGGTCGATGAGTCGGCCCGCGT
ACCATGCCATTGTGGTTCTGAGAAGTGCCGTGGCTTCATCAACTAG
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