mRNA_H-elongata_contig206374.5901.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig206374.5901.1
Unique NamemRNA_H-elongata_contig206374.5901.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig206374.5901.1 vs. uniprot
Match: D7G5N9_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5N9_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 2.750e-38
Identity = 60/66 (90.91%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 QIVLKKKAVDDIMGGEDAWANVDKTATTCPFCNNKEAFFLQVQLRSADEPMTCFYKCTRCKQRWKE 198
            +I LKKKAVDDIMGG+DAWANVDKT TTCPFCNNKEAFFL VQLRSADEPMTCFYKCT CKQRWKE
Sbjct:   43 KIALKKKAVDDIMGGDDAWANVDKTQTTCPFCNNKEAFFLMVQLRSADEPMTCFYKCTNCKQRWKE 108
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BLAST of mRNA_H-elongata_contig206374.5901.1 vs. uniprot
Match: W7TK62_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TK62_9STRA)

HSP 1 Score: 102 bits (253), Expect = 5.330e-25
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:   10 LKKKAVDDIMGGEDAWANVDKTATTCPFCNNKEAFFLQVQLRSADEPMTCFYKCTRCKQRW 192
            LK+K VDD++GGEDAWA  D+T T CPFC++ EAFF+Q+Q+RSADEPMT FY+CT C  RW
Sbjct:   43 LKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRW 103
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BLAST of mRNA_H-elongata_contig206374.5901.1 vs. uniprot
Match: A0A7R9TKB2_9VIRI (DNA-directed RNA polymerase subunit n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TKB2_9VIRI)

HSP 1 Score: 101 bits (252), Expect = 2.370e-24
Identity = 39/65 (60.00%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    4 IVLKKKAVDDIMGGEDAWANVDKTATTCPFCNNKEAFFLQVQLRSADEPMTCFYKCTRCKQRWKE 198
            + L++K VDD++GGEDAW NVDKT T CP C + EA+++Q+Q+RSADEPM+ FYKC +C  RW+E
Sbjct:   82 VALRRKEVDDVLGGEDAWENVDKTLTKCPTCGHTEAYYMQIQIRSADEPMSTFYKCVKCGARWRE 146
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BLAST of mRNA_H-elongata_contig206374.5901.1 vs. uniprot
Match: A0A485LC85_9STRA (Aste57867_18947 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LC85_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.500e-24
Identity = 37/66 (56.06%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 QIVLKKKAVDDIMGGEDAWANVDKTATTCPFCNNKEAFFLQVQLRSADEPMTCFYKCTRCKQRWKE 198
            ++ L++K VDD++GG++AW NVD+T T CPFC N +A+F+Q+Q+RSADEP T FYKC +CK++W +
Sbjct:   21 KVPLQRKKVDDVLGGDEAWENVDQTDTRCPFCENTKAYFMQIQIRSADEPSTTFYKCVQCKKQWND 86
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BLAST of mRNA_H-elongata_contig206374.5901.1 vs. uniprot
Match: A4RUS3_OSTLU (DNA-directed RNA polymerase subunit n=3 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4RUS3_OSTLU)

HSP 1 Score: 100 bits (248), Expect = 4.490e-24
Identity = 38/66 (57.58%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 QIVLKKKAVDDIMGGEDAWANVDKTATTCPFCNNKEAFFLQVQLRSADEPMTCFYKCTRCKQRWKE 198
            ++  +KK VDD++GG+DAW NVDKT+ TCP C + EA+F+Q+Q+RSADEPM+ FYKC +C ++W+E
Sbjct:   54 RVDARKKTVDDVLGGDDAWRNVDKTSATCPGCAHDEAYFMQIQIRSADEPMSVFYKCVKCARQWRE 119
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BLAST of mRNA_H-elongata_contig206374.5901.1 vs. uniprot
Match: A0A058ZBP1_FONAL (DNA-directed RNA polymerase subunit n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZBP1_FONAL)

HSP 1 Score: 99.8 bits (247), Expect = 4.650e-24
Identity = 38/66 (57.58%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 QIVLKKKAVDDIMGGEDAWANVDKTATTCPFCNNKEAFFLQVQLRSADEPMTCFYKCTRCKQRWKE 198
            +I+LK+K VDD++GGE +W NVD T   CP C+N+ A+F+Q+Q+RSADEPM+ FYKCT+C  +W+E
Sbjct:   43 RIILKRKEVDDVLGGEGSWDNVDSTEVPCPKCDNRRAYFMQIQIRSADEPMSTFYKCTKCAAQWRE 108
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BLAST of mRNA_H-elongata_contig206374.5901.1 vs. uniprot
Match: A0A077ZVQ1_STYLE (DNA-directed RNA polymerase subunit n=2 Tax=Oxytrichidae TaxID=57506 RepID=A0A077ZVQ1_STYLE)

HSP 1 Score: 99.0 bits (245), Expect = 8.550e-24
Identity = 38/63 (60.32%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:   10 LKKKAVDDIMGGEDAWANVDKTATTCPFCNNKEAFFLQVQLRSADEPMTCFYKCTRCKQRWKE 198
            L++K VDD++GG++AW NVD+    CP CNNK A+F+Q+Q+RSADEPMT FYKCT+C  +W+E
Sbjct:   43 LERKEVDDVLGGKEAWENVDQIEAQCPKCNNKRAYFMQIQIRSADEPMTTFYKCTQCSYQWRE 105
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BLAST of mRNA_H-elongata_contig206374.5901.1 vs. uniprot
Match: A0A316YL84_9BASI (DNA-directed RNA polymerase subunit n=1 Tax=Acaromyces ingoldii TaxID=215250 RepID=A0A316YL84_9BASI)

HSP 1 Score: 99.0 bits (245), Expect = 9.580e-24
Identity = 43/68 (63.24%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 QIVLKKKAVDDIMGGEDAWANVDKTATTCPFCNNKEAFFLQVQLRSADEPMTCFYKCTR--CKQRWKE 198
            ++ L +K VDDIMGG+DAW NVDKTA  CP C+N EAFF+Q+Q+RSADEPMT FY+CT   C  +W+E
Sbjct:   42 RVKLTRKDVDDIMGGDDAWKNVDKTAIACPKCDNPEAFFMQLQIRSADEPMTTFYRCTERTCGHQWRE 109
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BLAST of mRNA_H-elongata_contig206374.5901.1 vs. uniprot
Match: A9SIZ2_PHYPA (DNA-directed RNA polymerase subunit n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SIZ2_PHYPA)

HSP 1 Score: 99.0 bits (245), Expect = 9.580e-24
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 QIVLKKKAVDDIMGGEDAWANVDKTATTCPFCNNKEAFFLQVQLRSADEPMTCFYKCTR--CKQRWKE 198
            ++ LKKK VDD++GGEDAW NVD+T  TCP C+  +A+F+Q+Q+RSADEPMT FYKC    C  RWKE
Sbjct:   42 KLKLKKKEVDDVLGGEDAWKNVDRTTVTCPNCSYGQAYFMQIQIRSADEPMTTFYKCCNIDCNHRWKE 109
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BLAST of mRNA_H-elongata_contig206374.5901.1 vs. uniprot
Match: UPI000DD11709 (DNA-directed RNA polymerase III subunit RPC11 n=1 Tax=Malassezia restricta TaxID=76775 RepID=UPI000DD11709)

HSP 1 Score: 97.8 bits (242), Expect = 1.040e-23
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 QIVLKKKAVDDIMGGEDAWANVDKTATTCPFCNNKEAFFLQVQLRSADEPMTCFYKCTR--CKQRWKE 198
            ++ L++K VDD+MGGED+W NVD T  TCP C+N  A+F+Q+Q+RSADEPMT FYKCTR  C  +W+E
Sbjct:    8 RMYLQRKQVDDVMGGEDSWKNVDSTEVTCPKCDNDRAYFMQLQIRSADEPMTTFYKCTRTECGHQWRE 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig206374.5901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5N9_ECTSI2.750e-3890.91DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
W7TK62_9STRA5.330e-2567.21DNA-directed RNA polymerase subunit n=2 Tax=Nannoc... [more]
A0A7R9TKB2_9VIRI2.370e-2460.00DNA-directed RNA polymerase subunit n=1 Tax=Prasin... [more]
A0A485LC85_9STRA2.500e-2456.06Aste57867_18947 protein n=1 Tax=Aphanomyces stella... [more]
A4RUS3_OSTLU4.490e-2457.58DNA-directed RNA polymerase subunit n=3 Tax=Ostreo... [more]
A0A058ZBP1_FONAL4.650e-2457.58DNA-directed RNA polymerase subunit n=1 Tax=Fontic... [more]
A0A077ZVQ1_STYLE8.550e-2460.32DNA-directed RNA polymerase subunit n=2 Tax=Oxytri... [more]
A0A316YL84_9BASI9.580e-2463.24DNA-directed RNA polymerase subunit n=1 Tax=Acarom... [more]
A9SIZ2_PHYPA9.580e-2461.76DNA-directed RNA polymerase subunit n=1 Tax=Physco... [more]
UPI000DD117091.040e-2360.29DNA-directed RNA polymerase III subunit RPC11 n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig206374contigH-elongata_contig206374:275..1068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue2e-24
Seed eggNOG ortholog2880.D7G5N9
Preferred namePOLR3K
KEGG rclassRC02795
KEGG koko:K02326,ko:K03019
KEGG ReactionR00375,R00376,R00377,R00378,R00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko03030,ko03410,ko03420,ko04623,ko05166,ko05169,map00230,map00240,map01100,map03020,map03030,map03410,map03420,map04623,map05166,map05169
KEGG ModuleM00181,M00263
GOsGO:0000428,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005667,GO:0005669,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006366,GO:0006368,GO:0006383,GO:0006384,GO:0006386,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009987,GO:0010467,GO:0016070,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031123,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042779,GO:0042780,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050896,GO:0051716,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090575,GO:0097159,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen
EggNOG OGsCOG1594@1,KOG2906@2759
EC2.7.7.7
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03032,ko03036,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionZinc finger, TFIIS-type
Ec32 orthologEc-12_008560.1
Exons2
Model size521
Cds size165
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig206374.5901.1prot_H-elongata_contig206374.5901.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig206374 311..748 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930154.5884275-UTR-H-elongata_contig206374:274..3101622930154.5884275-UTR-H-elongata_contig206374:274..310Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig206374 275..310 +
1691679301.9479313-UTR-H-elongata_contig206374:274..3101691679301.9479313-UTR-H-elongata_contig206374:274..310Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig206374 275..310 +
1622930154.6256435-UTR-H-elongata_contig206374:748..10681622930154.6256435-UTR-H-elongata_contig206374:748..1068Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig206374 749..1068 +
1691679301.9800186-UTR-H-elongata_contig206374:748..10681691679301.9800186-UTR-H-elongata_contig206374:748..1068Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig206374 749..1068 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930154.5996819-CDS-H-elongata_contig206374:310..3521622930154.5996819-CDS-H-elongata_contig206374:310..352Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206374 311..352 +
1691679301.9612408-CDS-H-elongata_contig206374:310..3521691679301.9612408-CDS-H-elongata_contig206374:310..352Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206374 311..352 +
1622930154.6120014-CDS-H-elongata_contig206374:625..7481622930154.6120014-CDS-H-elongata_contig206374:625..748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206374 626..748 +
1691679301.9705124-CDS-H-elongata_contig206374:625..7481691679301.9705124-CDS-H-elongata_contig206374:625..748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206374 626..748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig206374.5901.1

>prot_H-elongata_contig206374.5901.1 ID=prot_H-elongata_contig206374.5901.1|Name=mRNA_H-elongata_contig206374.5901.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
MGGEDAWANVDKTATTCPFCNNKEAFFLQVQLRSADEPMTCFYKCTRCKQ
RWKE*
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mRNA from alignment at H-elongata_contig206374:275..1068+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig206374.5901.1 ID=mRNA_H-elongata_contig206374.5901.1|Name=mRNA_H-elongata_contig206374.5901.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=794bp|location=Sequence derived from alignment at H-elongata_contig206374:275..1068+ (Himanthalia elongata Himel1 dioecious)
CAGATTGTTCTGAAGAAGAAAGCTGTGGACGACATTATGGGCGGGGAGGA
TGCATGGGCAAACGTCGACAAAACAGCGGTATGTATACTTTCCCGTGGAC
ATCACACGTATCGTGCGTCTCCAGTTGTAATCTAGCCTAAACACTAACTT
GTCACTGGCTCGCGCAGCTCGATCGCTGAAGTTAAGTTTTCGTCATCGCT
CCGTGTAAGAGTGAGTTCCTATTAATAGGAGACAACTTACTACTCTAGGA
TAAATGCCTACCTTACCGCGATACTCGCAACGCCTACAATGTATTACGCG
CATCCCTCCCCCACACACACATGCCACGCGTCTTCCCGGGGGGTTCCAAA
GACCACGTGTCCGTTCTGCAACAACAAGGAGGCATTCTTCTTGCAGGTCC
AGCTCCGCTCTGCGGACGAGCCCATGACGTGCTTCTACAAGTGCACGAGA
TGCAAGCAGCGATGGAAAGAGTGATGACCGCGTCCGTTTTTGCGCGTTCT
TGGTGTGAGGTTGAGGGTCGCGCAGTCTGGCGTGATGTGCATTTTGGCCT
GAGAGCATGCTTCCCCCTGTGTGAAGTACACTCGGAGGTACTGCGCTTGC
TAAGCCGAAAGGCCTGCTTCCCTTTTTTCTTTTCTCTTTCTTACTAGTAT
TTCCGGATATTTTTATCGTCAAGTCAAGTAAAGTCAAGTAAAGTGACCTG
GCCTGGCCTGCAGACGTGCACGGAAGGCGATCTATGTAATAATTGAATTG
AATTGAATTGAATTGAATTCTCACATAAGCTGATGTCAAAATCC
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Coding sequence (CDS) from alignment at H-elongata_contig206374:275..1068+

>mRNA_H-elongata_contig206374.5901.1 ID=mRNA_H-elongata_contig206374.5901.1|Name=mRNA_H-elongata_contig206374.5901.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig206374:275..1068+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGGGGAGGATGCATGGGCAAACGTCGACAAAACAGCGATGGGCGG
GGAGGATGCATGGGCAAACGTCGACAAAACAGCGACCACGTGTCCGTTCT
GCAACAACAAGGAGGCATTCTTCTTGCAGGTCCAGCTCCGCTCTGCGGAC
GAGCCCATGACGTGCTTCTACAAGTGCACGAGATGCAAGCAGCGATGGAA
AGAGTGAACCACGTGTCCGTTCTGCAACAACAAGGAGGCATTCTTCTTGC
AGGTCCAGCTCCGCTCTGCGGACGAGCCCATGACGTGCTTCTACAAGTGC
ACGAGATGCAAGCAGCGATGGAAAGAGTGA
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