mRNA_H-elongata_contig205998.5885.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig205998.5885.1
Unique NamemRNA_H-elongata_contig205998.5885.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig205998.5885.1 vs. uniprot
Match: A0A6H5KGT8_9PHAE (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGT8_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 6.590e-16
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 SSQHMWNYDKIAANPAMAEAFRLFANRALCQESVWFLEEVSRW 129
            ++QHMW YDKIA + AMAEAFR+FANRALCQESVWFLEEVSR+
Sbjct:  269 AAQHMWTYDKIALDNAMAEAFRVFANRALCQESVWFLEEVSRY 311
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BLAST of mRNA_H-elongata_contig205998.5885.1 vs. uniprot
Match: D7G1D4_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1D4_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.160e-6
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   16 WNYDKIAANPAMAEAFRLFANRALCQESVWFLEEVSRWVS 135
            W+YD +   P +AEAFR FA+RALCQES+ FLE V+++ S
Sbjct:   68 WSYDTMTTVPEVAEAFRGFAHRALCQESIMFLEAVTQYES 107
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BLAST of mRNA_H-elongata_contig205998.5885.1 vs. uniprot
Match: D8LEL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL1_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 6.560e-6
Identity = 20/42 (47.62%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 SSQHMWNYDKIAANPAMAEAFRLFANRALCQESVWFLEEVSR 126
            S   +W Y+K+AA P+++  F  FA +ALCQES+ FL++V+R
Sbjct:  115 SESTLWTYEKVAAMPSVSAVFDEFARKALCQESILFLKDVTR 156
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BLAST of mRNA_H-elongata_contig205998.5885.1 vs. uniprot
Match: A0A6H5KIU5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIU5_9PHAE)

HSP 1 Score: 46.6 bits (109), Expect = 5.800e-5
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   31 IAANPAMAEAFRLFANRALCQESVWFLEEVSRWVS 135
            +A  P +AEAFR FA+RALCQES+ FLEEV+++ S
Sbjct:    1 MAKVPEVAEAFRGFAHRALCQESIMFLEEVTKYES 35
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig205998.5885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KGT8_9PHAE6.590e-1681.40RGS domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7G1D4_ECTSI1.160e-657.50RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LEL1_ECTSI6.560e-647.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIU5_9PHAE5.800e-562.86RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig205998contigH-elongata_contig205998:669..803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionRGS domain
Ec32 orthologEc-00_005630.1
Exons1
Model size135
Cds size123
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930152.9491506-UTR-H-elongata_contig205998:668..6801622930152.9491506-UTR-H-elongata_contig205998:668..680Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig205998 669..680 +
1691679301.3893657-UTR-H-elongata_contig205998:668..6801691679301.3893657-UTR-H-elongata_contig205998:668..680Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig205998 669..680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930152.9713886-CDS-H-elongata_contig205998:680..8031622930152.9713886-CDS-H-elongata_contig205998:680..803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205998 681..803 +
1691679301.3979597-CDS-H-elongata_contig205998:680..8031691679301.3979597-CDS-H-elongata_contig205998:680..803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205998 681..803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig205998.5885.1prot_H-elongata_contig205998.5885.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig205998 681..803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig205998.5885.1

>prot_H-elongata_contig205998.5885.1 ID=prot_H-elongata_contig205998.5885.1|Name=mRNA_H-elongata_contig205998.5885.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
MWNYDKIAANPAMAEAFRLFANRALCQESVWFLEEVSRWVS
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mRNA from alignment at H-elongata_contig205998:669..803+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig205998.5885.1 ID=mRNA_H-elongata_contig205998.5885.1|Name=mRNA_H-elongata_contig205998.5885.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig205998:669..803+ (Himanthalia elongata Himel1 dioecious)
TCTTCGCAGCACATGTGGAACTACGACAAGATCGCGGCGAACCCCGCTAT
GGCCGAAGCCTTCAGACTCTTTGCAAACCGAGCCTTATGTCAAGAGTCCG
TTTGGTTCCTCGAGGAAGTTTCCAGGTGGGTTTCG
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Coding sequence (CDS) from alignment at H-elongata_contig205998:669..803+

>mRNA_H-elongata_contig205998.5885.1 ID=mRNA_H-elongata_contig205998.5885.1|Name=mRNA_H-elongata_contig205998.5885.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig205998:669..803+ (Himanthalia elongata Himel1 dioecious)
ATGTGGAACTACGACAAGATCGCGGCGAACCCCGCTATGGCCGAAGCCTT
CAGACTCTTTGCAAACCGAGCCTTATGTCAAGAGTCCGTTTGGTTCCTCG
AGGAAGTTTCCAGGTGGGTTTCGATGTGGAACTACGACAAGATCGCGGCG
AACCCCGCTATGGCCGAAGCCTTCAGACTCTTTGCAAACCGAGCCTTATG
TCAAGAGTCCGTTTGGTTCCTCGAGGAAGTTTCCAGGTGGGTTTCG
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