mRNA_H-elongata_contig20535.5856.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20535.5856.1 vs. uniprot
Match: D7FSQ9_ECTSI (DOT1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSQ9_ECTSI) HSP 1 Score: 427 bits (1099), Expect = 1.070e-145 Identity = 230/344 (66.86%), Postives = 258/344 (75.00%), Query Frame = 1
Query: 7 KTPSKPRTPSGGLTALRLGVEDEPEEE----EKLTPSK-----SASRGPNRILEMTPTKRR--AFGRKGGKPFKPPVTIPPEVSRVYGLVAKATGSVGGNGSSGAIYGELTAGCMQKVVNVLKEETGFDENSSFIDVGSGLGKPNFHVAQDPGCEISYGLELEEVRWQLSVVNHRRLLLDGGGSNGLELKKHNLFFAHGDVLSAKTFDPFTHVYMFDIGFPPATLCQIAKIFNRSKARHLISYQFPHNVED-YGFDVDMVLKMPLRLTGSKEGHTMYLYRRKNVEAGLPTSRITEVDPFFSQGVDLCRNGGNG--TELTMHVEARFIENTSGGIRTRRSRRRGA 996
KTP+K TP + +R G + E E TPSK +A GP R L MTPTK++ AFGRK G P K V +P EVSRVY +VAKATG++GGNGS GAIYGELT G MQKVVNVLKE TGFDE SSFIDVG+GLGKPNFHVAQDPG EISYGLELE VRW+LS+ NHR +L D G NG+ + KHNLFFA GD+L +TFDPFTHVYMFDIGFPPATL +IAK FN SKARHL+SYQ P V D YGFDVD+VL+ PL LTGS EGHTMYL+RRKNVE GL RI EVDPFF++GV LCRN G G +ELT HVE F NTSGG+RTRRSRR A
Sbjct: 115 KTPAKRGTPKD-VKVMRQGGDGEXXXXXXGGESATPSKKKKTEAALEGPVRTLSMTPTKKKRGAFGRKDGTPMKARVDVPEEVSRVYAIVAKATGNIGGNGSDGAIYGELTVGGMQKVVNVLKEHTGFDEMSSFIDVGAGLGKPNFHVAQDPGVEISYGLELEVVRWELSIANHRMVLQDEG-DNGVHVAKHNLFFARGDILGCETFDPFTHVYMFDIGFPPATLHEIAKKFNNSKARHLVSYQVPKKVIDVYGFDVDLVLQQPLSLTGSGEGHTMYLFRRKNVEPGLKIERIDEVDPFFAEGVKLCRNRGEGGGSELTAHVEGAFERNTSGGVRTRRSRRANA 456
BLAST of mRNA_H-elongata_contig20535.5856.1 vs. uniprot
Match: K0R0G2_THAOC (DOT1 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R0G2_THAOC) HSP 1 Score: 243 bits (620), Expect = 7.220e-74 Identity = 139/338 (41.12%), Postives = 200/338 (59.17%), Query Frame = 1
Query: 7 KTPSKPRTPSGGLTALRLGVEDEPEEEEKLTPSKSASRGPNRILEMTPTKRRAFGRKGGKPFKPPVTIPPEVSRVYGLVAKATGSVGGNGSSGAIYGELTAGCMQKVVNVLKEETGFDENSSFIDVGSGLGKPNFHVAQDPGCEISYGLELEEVRWQLSVVNHRRLLL------DGGGSNGLELKKHNLFFAHGDVLSAKTFDPFTHVYMFDIGFPPATLCQIAKIFNRSKARHLISYQFPH-NVEDYGFDVDMVLKMPLRLTGSKEGHTMYLYRRKNVEAGLPTSRITEV----DPFFSQGVDLCRNGGNGTELTMHVEARFIENTSGGIRTRRSRR 987
++P PR S L+++R EDE + + + SKS + G ++ T + FGR + + IP VSRVY +V TGSVGGNG GAIYGELT G MQK+ N++ + T D+ S FIDVG GLGKPN HVAQ PG E SYG+EL RW L + N +++++ + G G E H L+FAHGD+ A FDPFTHVYMFDIGFPP Q+A++FN S++ +LI Y P +EDYGF+++++++ P + GS E HT Y+YRR A + + ++ DP F++ ++C++G +H I ++ G+ +RR R
Sbjct: 89 RSPRSPRR-SLDLSSVR---EDEGDSTD-IDESKSTAEGAGKVTGKT---KLPFGRNVKQ-----IEIPRNVSRVYKIVHSQTGSVGGNGHGGAIYGELTTGSMQKMTNLMMKHTNLDKTSRFIDVGCGLGKPNLHVAQYPGVEFSYGIELYHTRWMLGMSNLQQVMVAAMSDFENGKDKGDEAIGHRLYFAHGDITEATHFDPFTHVYMFDIGFPPTLFHQLAEMFNNSQSEYLICYHGPKLMIEDYGFNIELIVQTPTSMHGSSEVHTGYIYRRSETAAEAKSCKTKKLGVLCDPLFAKAYEMCQSG----LKNVHDHTNAIVESNWGVSSRRRTR 409
BLAST of mRNA_H-elongata_contig20535.5856.1 vs. uniprot
Match: B8BQJ6_THAPS (DOT1 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQJ6_THAPS) HSP 1 Score: 233 bits (595), Expect = 1.420e-70 Identity = 143/357 (40.06%), Postives = 196/357 (54.90%), Query Frame = 1
Query: 1 RTKTPSKPR----------TPSGGLTALRLGVEDEPEEEEKLTPSKSASRGPNRILEMTPTKRRAFGRKGGKPF---KPPVTIPPEVSRVYGLVAKATGSVGGNGSSGAIYGELTAGCMQKVVNVLKEETGFDENSSFIDVGSGLGKPNFHVAQDPGCEISYGLELEEVRWQLSVVNHRRLLLDG--GGSNGLELKK-----HNLFFAHGDVLSAKTFDPFTHVYMFDIGFPPATLCQIAKIFNRSKARHLISYQFPH-NVEDYGFDVDMVLKMPLRLTGSKEGHTMYLYRR-------KNVEAGLPTSRI-TEVDPFFSQGVDLCRNGGNGTELTMHVEARFIENTSGGIRTRRSR 984
R+KTP P+ TPS AL DE + +T A R + + +PTK PF + IP VSRVY +V K TGS+GGNG GAIYGEL G MQK+ N++ E TG + NS FIDVG GLGKPN HVAQ PG E SYG+E+E VRW L + N ++L N E+ + H + AHGD+ A FDPFTHVYMFDIGFPP Q+A++FN S++ +LI Y P +E Y FD++++++ P + GS E HT Y+YRR + G + + DP F++ +LC++ + +E++ H+ A IE G + R +R
Sbjct: 33 RSKTPRTPQRQSASDRVVVTPSVSAVALEKKKVDE----DDITAFNKARRSLDLSAKSSPTKATKESNTRKLPFGGNTKSIDIPTNVSRVYNIVNKHTGSIGGNGHGGAIYGELRVGSMQKMTNLMMEHTGLNVNSRFIDVGCGLGKPNLHVAQHPGVEFSYGIEMENVRWMLGIANLHQVLEQAKRDAVNDEEISEDAKIGHACYLAHGDITEANFFDPFTHVYMFDIGFPPLLFHQLAEMFNSSESEYLICYHGPKLMIETYEFDIELLVQTPTSMHGSSEVHTGYIYRRTAENKRKSKKQTGCKSKKYGVPCDPLFAKAWELCKS--DLSEVSEHI-AEQIEEHMGATKRRSTR 382
BLAST of mRNA_H-elongata_contig20535.5856.1 vs. uniprot
Match: A0A7S4QC13_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QC13_9STRA) HSP 1 Score: 234 bits (597), Expect = 6.560e-70 Identity = 129/273 (47.25%), Postives = 164/273 (60.07%), Query Frame = 1
Query: 25 RTPSGGLTALRLGVEDEPEEEEKLTPSKSASRGPNRILEMTPTKRRAFGRKGGKPFKPPVTIPPEVSRVYGLVAKATGSVGGNGSSGAIYGELTAGCMQKVVNVLKEETGFDENSSFIDVGSGLGKPNFHVAQDPGCEISYGLELEEVRWQLSVVNHRRLLL-----DGGGS----NGLELKKHNLFFAHGDVLSAKTFDPFTHVYMFDIGFPPATLCQIAKIFNRSKARHLISYQFPH-NVEDYGFDVDMVLKMPLRLTGSKEGHTMYLYRR 813
RTPS +L + + S +S N + KR AFG +T P V RVY +V + TGS+GGNG GAIYGELT G MQK+VN++K TG DENS FIDVG GLGKPN HVAQDPG + SYG+E+E VRW L + N ++L D GGS +G + H AHGD+ A+ FDPFTHVYMFDIGFPP Q+A +FNRS + +LI Y P VE YGFD+++++++ + GS EGH Y+YRR
Sbjct: 125 RTPSKARRSLMMSAPAVVSDSSSPNTSSGSSDEENVTEKPIAKKRNAFGHTAVNA----ITYPANVKRVYQVVNRQTGSIGGNGHGGAIYGELTVGSMQKMVNMMKVHTGLDENSRFIDVGCGLGKPNMHVAQDPGVQFSYGIEMEHVRWLLGMSNLDQVLREAQRQDRGGSVLDVSGNSIIGHRCTLAHGDITEAQFFDPFTHVYMFDIGFPPRLFYQLADMFNRSSSPYLICYHGPKLMVERYGFDIELIIQLSTSMHGSSEGHMGYIYRR 393
BLAST of mRNA_H-elongata_contig20535.5856.1 vs. uniprot
Match: A0A7S2YHF8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YHF8_9STRA) HSP 1 Score: 231 bits (590), Expect = 1.440e-68 Identity = 132/276 (47.83%), Postives = 169/276 (61.23%), Query Frame = 1
Query: 94 LTPSKSASRGPNRILEMTPTKRR-AFGRKGGKPFKPPVTIPPEVSRVYGLVAKATGSVGGNGSSGAIYGELTAGCMQKVVNVLKEETGFDENSSFIDVGSGLGKPNFHVAQDPGCEISYGLELEEVRWQLSVVNHRRLLLDGGGSNGLELKKHNLFFAHGDVLSAKTFDPFTHVYMFDIGFPPATLCQIAKIFNRSKARHLISYQFPHNVED-YGFDVDMVLKMPLRLTGSKEGHTMYLYRRKNVEAGLPTSRITE-----VDPFFSQGVDLCRNG 900
+TPSKS + +P KRR FGR + + V +VY L+ K TGS+GGN S+G IYGELT G MQK+VN++KE T FD +S FIDVGSG+GKPNFHVAQDPG EISYGLE++ RW LS+ N R LD + E +H F D+ A +FDPFTHVYMF IGFPP +A ++NRSK+ +LI Y P ++ D Y F+V+++ K P + GSKEGHT Y+YRR + TE VDP F+ G+ R G
Sbjct: 211 VTPSKSGASA----TAQSPAKRRIVFGRYSE------IDVTERVKKVYRLIRKLTGSIGGNASNGPIYGELTMGSMQKMVNLMKEHTHFDASSKFIDVGSGIGKPNFHVAQDPGVEISYGLEIDADRWLLSM-NCLRGTLDLAAQD--EDVQHRCVFVQEDIRQAHSFDPFTHVYMFSIGFPPDLWITLADVWNRSKSPYLICYHSPKDIIDCYEFEVELLAKTPTSMHGSKEGHTGYVYRRTTSASTTAAESSTETTVERVDPLFAGGIATIRGG 473
BLAST of mRNA_H-elongata_contig20535.5856.1 vs. uniprot
Match: A0A7S3Q7R7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q7R7_9STRA) HSP 1 Score: 228 bits (580), Expect = 6.960e-68 Identity = 117/233 (50.21%), Postives = 150/233 (64.38%), Query Frame = 1
Query: 202 VTIPPEVSRVYGLVAKATGSVGGNGSSGAIYGELTAGCMQKVVNVLKEETGFDENSSFIDVGSGLGKPNFHVAQDPGCEISYGLELEEVRWQLSVVNHRRLLLDG-----GGSNGLELKKHNLFFAHGDVLSAKTFDPFTHVYMFDIGFPPATLCQIAKIFNRSKARHLISYQFPHNVED-YGFDVDMVLKMPLRLTGSKEGHTMYLYRR----KNVEAGLPTSRITEVDPFF 870
VTI P+ VY LV K TGS+GGNG GAIYGELT G MQK++N++KE T F+ +S FIDVG GLGKPN HVAQDP E SYG+E+E VRW L + N + L + G E +H AHGD+ A+ FDPFTHVYMFDIGFPP Q+ K+FNRS++ +LI Y P + D YGF+V+++++ P + GS EGH Y+YRR + + GL + DP F
Sbjct: 150 VTILPKTRTVYKLVNKMTGSIGGNGRGGAIYGELTMGSMQKMINLMKEHTNFNSSSRFIDVGCGLGKPNIHVAQDPQVEFSYGIEMEHVRWVLGMSNLKVSLKEACRQEAEGQTEEECIRHRCMLAHGDITEAQFFDPFTHVYMFDIGFPPKLFKQLGKMFNRSQSEYLICYHRPSLMVDRYGFNVELIIQEPTSMHGSSEGHMGYIYRRVGRKQKIGKGLQSVDGVPCDPLF 382
BLAST of mRNA_H-elongata_contig20535.5856.1 vs. uniprot
Match: A0A7S2PSU5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PSU5_9STRA) HSP 1 Score: 226 bits (575), Expect = 4.410e-67 Identity = 120/261 (45.98%), Postives = 161/261 (61.69%), Query Frame = 1
Query: 172 RKGGKPF--KPPVTIPPEVSRVYGLVAKATGSVGGNGSSGAIYGELTAGCMQKVVNVLKEETGFDENSSFIDVGSGLGKPNFHVAQDPGCEISYGLELEEVRWQLSVVNHRRLLLDG-----------GGSNGLELKKHNLFFAHGDVLSAKTFDPFTHVYMFDIGFPPATLCQIAKIFNRSKARHLISYQFPHNVED-YGFDVDMVLKMPLRLTGSKEGHTMYLYRRK---NVEAGLPTSRI-TEVDPFFSQGVDLCRNG 900
++ PF K + +P V RVY ++ K TGS+GGNG GAIYGELT G MQK+ N++ E T + S FIDVG GLGKPN HVAQ PG E SYG+E+E VRW L + N ++L G +G +++ H FFAHGD+ A FDPFTHVYMFDIGFPP Q+A++FN S++ +LI Y P + D Y F+V+++++ P + GS EGH Y+YRR N TS+ T DP F++ ++CR G
Sbjct: 132 KRSKSPFGNKSTIKVPTNVKRVYEIINKHTGSIGGNGHGGAIYGELTVGSMQKMTNLMIEYTDLSKESRFIDVGCGLGKPNLHVAQYPGVEFSYGIEMEHVRWMLGMANLDQVLKAAQKDIAFEEAKKDGDDGSKIE-HRCFFAHGDITEASFFDPFTHVYMFDIGFPPRLFHQLAEMFNNSQSEYLICYHGPKLMIDRYEFNVELLVQTPTSMHGSAEGHQGYIYRRTKKANKRNSCSTSQFETPCDPLFAKAWEVCREG 391
BLAST of mRNA_H-elongata_contig20535.5856.1 vs. uniprot
Match: A0A7S3KVJ6_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KVJ6_9STRA) HSP 1 Score: 220 bits (561), Expect = 2.860e-65 Identity = 131/296 (44.26%), Postives = 169/296 (57.09%), Query Frame = 1
Query: 124 PNRILEMTPTKRRA-FGRKGGKPFKPPVTIPPEVSRVYGLVAKATGSVGGNGSSGAIYGELTAGCMQKVVNVLKEETGFDENSSFIDVGSGLGKPNFHVAQDPGCEISYGLELEEVRWQLSVVNHRRLLLDGGGSNGLELKK-----HNLFFAHGDVLSAKTFDPFTHVYMFDIGFPPATLCQIAKIFNRSKARHLISYQFPHNVED-YGFDVDMVLKMPLRLTGSKEGHTMYLYRRKNVEAGLPTSRITEVDPFFSQGVDLCRNGGNGTELTMHVEARFIENTSGGIRTRRSRRR 990
P R + T KRR FGR+ P+ + V +VY +V + TGS+GGN SSG IYGELT G MQK++N++KE TG S FIDVGSG+GKPN HVAQDPG SYGLE+EE RW L + + +L + EL H FF GD+ AK+F+PF+HVYMF IGFPP ++AKI+NRS + LI Y P ++ D Y FDV++V + + GSKEGH Y+Y+RK+ + DP F D + EL V A + G TR SRRR
Sbjct: 121 PGREGDDTGAKRRLLFGREVS-----PIHVQDNVRKVYKIVRRLTGSLGGNASSGPIYGELTMGSMQKMINLMKEHTGLCAESRFIDVGSGIGKPNLHVAQDPGVCFSYGLEVEESRWLLGMTCLKGMLEAAVSESVKELSDDERIHHQCFFEKGDIRQAKSFNPFSHVYMFSIGFPPMLWIELAKIWNRSSSPFLICYHSPKDIIDTYEFDVELVTQKQTSMHGSKEGHMGYIYKRKSARS----FHRAACDPLFKPAFDKVEK--SAEELNDEVGAEIDQMQGTGPATRSSRRR 405
BLAST of mRNA_H-elongata_contig20535.5856.1 vs. uniprot
Match: A0A1Z5J7B9_FISSO (DOT1 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J7B9_FISSO) HSP 1 Score: 216 bits (549), Expect = 4.510e-64 Identity = 119/262 (45.42%), Postives = 158/262 (60.31%), Query Frame = 1
Query: 109 SASRGPNRILEMTPTKRRAFGRKGGKPFKPPVTIPPEVSRVYGLVAKATGSVGGNGSSGAIYGELTAGCMQKVVNVLKEETGFDENSSFIDVGSGLGKPNFHVAQDPGCEISYGLELEEVRWQLSVVNHRRLL-------LDGGGSNGLELKKHNLFFAHGDVLSAKTFDPFTHVYMFDIGFPPATLCQIAKIFNRSKARHLISYQFPHNVED-YGFDVDMVLKMPLRLTGSKEGHTMYLYRRKNVEAGLPTSRITEVDPFF 870
S SR + E K+ FGR + + I P V +VYG++ K TGS+GGNGS G IYGELT MQKVVN++K+ F+ NS FIDVGSG+GKPN HV QDPG ++SYG+E+E+ RW L + + +L D + E+ H F GD+ SA +F+PFTHVYMF IGFPP+ +A ++N S + +LI Y P ++ D Y FDV ++ + P + GSKEGHT+YLYRR G IT DP F
Sbjct: 66 SRSRATPKRSEPKAKKKLIFGRLVDE-----INIQPNVRKVYGIIRKLTGSIGGNGSHGPIYGELTMSSMQKVVNLMKQHMNFNSNSKFIDVGSGIGKPNLHVCQDPGVKLSYGIEIEQARWILGMTCLKGVLDAAVKEEKDIDEAYDDEIILHRCVFECGDIRSANSFNPFTHVYMFSIGFPPSLWIHLAAMWNSSDSPYLICYHGPKDIIDSYEFDVVLIAQAPTSMHGSKEGHTVYLYRR-TTHTG---EEITSCDPLF 318
BLAST of mRNA_H-elongata_contig20535.5856.1 vs. uniprot
Match: A0A0P1A7P9_PLAHL (DOT1 domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A7P9_PLAHL) HSP 1 Score: 215 bits (547), Expect = 1.690e-63 Identity = 122/275 (44.36%), Postives = 164/275 (59.64%), Query Frame = 1
Query: 217 EVSRVYGLVAKATGSVGGNGSSGAIYGELTAGCMQKVVNVLKEETGFDENSSFIDVGSGLGKPNFHVAQDPGCEISYGLELEEVRWQLSVVNHRRLLLDGGGSNGLELKKHNLFFAHGDVLSAKTFDPFTHVYMFDIGFPPATLCQIAKIFNRSKARHLISYQFPHNVED-YGFDVDMVLKMPLRLTGSKEGHTMYLYRR----------KNVEAGLPTSRIT-------EVDPFFSQGVDLCRNGGNGTELTMHVEARFIENTSGGIRTRRSRR 987
EVS VY + K TGS+GGN + GAIYGE+T Q+VV+ LKE E+S FIDVGSGLGKPNFHVA DPG ++SYG+ELEE+RW LS+ N R +L LK + F GD+ A TF+PF+HVY FD+GFPP + ++A +FNRS A++ S+ P V D YGF V+ + ++ + GS EGH Y YRR KN + S ++ +VDP FS+G++L + G G + V F + +G RTRR +R
Sbjct: 74 EVSEVYKAIRKQTGSLGGNAAGGAIYGEITQASFQRVVDYLKEFCELSESSRFIDVGSGLGKPNFHVAVDPGVQLSYGIELEELRWHLSLHNLRSVL----SLESQRLKPVSTVFTAGDITHAHTFEPFSHVYSFDVGFPPDVMDKMALMFNRSSAKYYASFHAPRKVVDMYGFAVENIGRVATSMAGSSEGHQCYFYRRLASTGGDKKVKNDKVEAQVSSVSNDINSWIDVDPLFSKGIELLKGGREG--MIEWVIDFFAQANAG--RTRRQKR 340 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20535.5856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20535.5856.1 >prot_H-elongata_contig20535.5856.1 ID=prot_H-elongata_contig20535.5856.1|Name=mRNA_H-elongata_contig20535.5856.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=335bp RTKTPSKPRTPSGGLTALRLGVEDEPEEEEKLTPSKSASRGPNRILEMTPback to top mRNA from alignment at H-elongata_contig20535:580..6616- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20535.5856.1 ID=mRNA_H-elongata_contig20535.5856.1|Name=mRNA_H-elongata_contig20535.5856.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6037bp|location=Sequence derived from alignment at H-elongata_contig20535:580..6616- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20535:580..6616- >mRNA_H-elongata_contig20535.5856.1 ID=mRNA_H-elongata_contig20535.5856.1|Name=mRNA_H-elongata_contig20535.5856.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2010bp|location=Sequence derived from alignment at H-elongata_contig20535:580..6616- (Himanthalia elongata Himel1 dioecious)back to top |