mRNA_H-elongata_contig205021.5848.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig205021.5848.1
Unique NamemRNA_H-elongata_contig205021.5848.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig205021.5848.1 vs. uniprot
Match: A0A8F0JZP1_9PHAE (Preprotein translocase subunit secY n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZP1_9PHAE)

HSP 1 Score: 401 bits (1031), Expect = 1.850e-137
Identity = 217/233 (93.13%), Postives = 224/233 (96.14%), Query Frame = 1
Query:    1 LALTNQSILFSFFIGGIFLLTTVGCVYINEAMVNIPLVSASQLLRKPSKLTLWNISNLPLRVNQSGVMPLVFTSSVMVVASSVAKLLYGQLITIELFSFLNSLSTNLTLGIGKISYWVLYGILVYFFTSFYSKILLDPKDISEQFRKNSVTIKEINPGMPTRNYLSKTIKRLTIINAGFLIVVLILLNGLEYLLPINNLNLRGFGLTSQLILVNVLVDTFRKVQSFLNAEETF 699
            LALTNQ+IL SF IGGIFLLTT+GCVYINEAMVNIPLVSASQLLRKPSKLTLWNISNLPLRVNQSGVMPLVFTSSVMVV SSV+KLLY QL+T+ELFS LNSLS NLTLG+GKI YW LYGILVYFFTSFYSKILLDPKDISEQFRKNSVTIKEINPGMPTRNYLSKTIKRLT+INAGFLIVVLILLNGLEYLLPINNLNLRGFGLTSQLILVNVLVDTFRKVQS LNAEETF
Sbjct:  199 LALTNQNILLSFLIGGIFLLTTIGCVYINEAMVNIPLVSASQLLRKPSKLTLWNISNLPLRVNQSGVMPLVFTSSVMVVVSSVSKLLYAQLVTVELFSSLNSLSANLTLGVGKIFYWSLYGILVYFFTSFYSKILLDPKDISEQFRKNSVTIKEINPGMPTRNYLSKTIKRLTLINAGFLIVVLILLNGLEYLLPINNLNLRGFGLTSQLILVNVLVDTFRKVQSLLNAEETF 431          
BLAST of mRNA_H-elongata_contig205021.5848.1 vs. uniprot
Match: A0A0R6LUW4_UNDPI (Protein translocase subunit SecY n=28 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUW4_UNDPI)

HSP 1 Score: 348 bits (892), Expect = 2.230e-116
Identity = 190/233 (81.55%), Postives = 208/233 (89.27%), Query Frame = 1
Query:    1 LALTNQSILFSFFIGGIFLLTTVGCVYINEAMVNIPLVSASQLLRKPSKLTLWNISNLPLRVNQSGVMPLVFTSSVMVVASSVAKLLYGQLITIELFSFLNSLSTNLTLGIGKISYWVLYGILVYFFTSFYSKILLDPKDISEQFRKNSVTIKEINPGMPTRNYLSKTIKRLTIINAGFLIVVLILLNGLEYLLPINNLNLRGFGLTSQLILVNVLVDTFRKVQSFLNAEETF 699
            LAL+NQ+I+ SFFIGGIFLLTTVGC+YINEAMV IPLVSASQLLR  +K +LWN SNLPLRVNQ+GVMPLVFTSSVMV+ SS+A L+YGQLI IELFSFLNS STNLTLGIGKI YW  YGILV+FFTSFYS ILLDPKD++EQFRKNSVTIK I PG  T+ YLS TIKRLTI+NA FLI VLILLNGLEYLLP+NNLNLRGFGLTSQLILVNVLVDTFRKV++ LNAE  F
Sbjct:  199 LALSNQNIIISFFIGGIFLLTTVGCIYINEAMVKIPLVSASQLLRNVNKFSLWNNSNLPLRVNQAGVMPLVFTSSVMVILSSLANLIYGQLINIELFSFLNSFSTNLTLGIGKIFYWSTYGILVFFFTSFYSTILLDPKDMTEQFRKNSVTIKGITPGKSTQKYLSITIKRLTILNAVFLIGVLILLNGLEYLLPVNNLNLRGFGLTSQLILVNVLVDTFRKVRNLLNAEAMF 431          
BLAST of mRNA_H-elongata_contig205021.5848.1 vs. uniprot
Match: D1J735_ECTSI (Protein translocase subunit SecY n=7 Tax=Ectocarpales TaxID=2877 RepID=D1J735_ECTSI)

HSP 1 Score: 337 bits (863), Expect = 5.680e-112
Identity = 180/233 (77.25%), Postives = 203/233 (87.12%), Query Frame = 1
Query:    1 LALTNQSILFSFFIGGIFLLTTVGCVYINEAMVNIPLVSASQLLRKPSKLTLWNISNLPLRVNQSGVMPLVFTSSVMVVASSVAKLLYGQLITIELFSFLNSLSTNLTLGIGKISYWVLYGILVYFFTSFYSKILLDPKDISEQFRKNSVTIKEINPGMPTRNYLSKTIKRLTIINAGFLIVVLILLNGLEYLLPINNLNLRGFGLTSQLILVNVLVDTFRKVQSFLNAEETF 699
            L L+ Q+I+ S FI GIFLLTT+GC+YINEA+V IPLVSASQLLR  +K +LWN SNLPLRVNQ+GVMPLVFTSSVMV+ SS+   LYGQL+ IE FSFLN LST LTLGIGK+ YW  YG+LV+FFTSFYS ILLDPKD++EQFRKNSVTIK INPG PT+NYLS TIKRLTI+NA FL+VVLILLNGLEYLLP+ +LNLRGFGLTSQLILVNVLVDTFRKVQ+ LNAE  F
Sbjct:  200 LVLSKQNIIISLFISGIFLLTTIGCIYINEAIVKIPLVSASQLLRNVNKFSLWNQSNLPLRVNQAGVMPLVFTSSVMVILSSLTTFLYGQLLNIEFFSFLNYLSTTLTLGIGKVFYWSAYGVLVFFFTSFYSTILLDPKDMTEQFRKNSVTIKGINPGKPTKNYLSITIKRLTILNAVFLVVVLILLNGLEYLLPVGDLNLRGFGLTSQLILVNVLVDTFRKVQNLLNAENMF 432          
BLAST of mRNA_H-elongata_contig205021.5848.1 vs. uniprot
Match: A0A8F0JZQ7_9PHAE (Preprotein translocase subunit secY n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZQ7_9PHAE)

HSP 1 Score: 335 bits (858), Expect = 3.140e-111
Identity = 184/233 (78.97%), Postives = 206/233 (88.41%), Query Frame = 1
Query:    1 LALTNQSILFSFFIGGIFLLTTVGCVYINEAMVNIPLVSASQLLRKPSKLTLWNISNLPLRVNQSGVMPLVFTSSVMVVASSVAKLLYGQLITIELFSFLNSLSTNLTLGIGKISYWVLYGILVYFFTSFYSKILLDPKDISEQFRKNSVTIKEINPGMPTRNYLSKTIKRLTIINAGFLIVVLILLNGLEYLLPINNLNLRGFGLTSQLILVNVLVDTFRKVQSFLNAEETF 699
            LAL+ Q+IL SFFI GIFLLTT+GC+YINEAMV IPLVSASQLLR  +KL+LW+ SNLPLRVNQ+GVMPLVFTSSVMV+ SSVAKL+YGQLI+IE FSFL+ LST+LT+GIGK  YW  YGILV+ FTSFYS ILLDPKD++E+FRKNSV IK I PG  T+NYLS TIKRLTI+NA FLIVVL LLNGLEYLLPINNLNLRGFGLTSQLILVNVLVDTFRKVQ+ L AE+ F
Sbjct:  199 LALSTQNILISFFIAGIFLLTTIGCIYINEAMVKIPLVSASQLLRNVNKLSLWSDSNLPLRVNQAGVMPLVFTSSVMVIFSSVAKLIYGQLISIEFFSFLSYLSTDLTIGIGKFFYWSTYGILVFGFTSFYSTILLDPKDMTEKFRKNSVIIKGITPGKATQNYLSITIKRLTILNAIFLIVVLFLLNGLEYLLPINNLNLRGFGLTSQLILVNVLVDTFRKVQNLLKAEDVF 431          
BLAST of mRNA_H-elongata_contig205021.5848.1 vs. uniprot
Match: D1GJR5_FUCVE (Protein translocase subunit SecY n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJR5_FUCVE)

HSP 1 Score: 320 bits (819), Expect = 2.510e-105
Identity = 174/231 (75.32%), Postives = 197/231 (85.28%), Query Frame = 1
Query:    7 LTNQSILFSFFIGGIFLLTTVGCVYINEAMVNIPLVSASQLLRKPSKLTLWNISNLPLRVNQSGVMPLVFTSSVMVVASSVAKLLYGQLITIELFSFLNSLSTNLTLGIGKISYWVLYGILVYFFTSFYSKILLDPKDISEQFRKNSVTIKEINPGMPTRNYLSKTIKRLTIINAGFLIVVLILLNGLEYLLPINNLNLRGFGLTSQLILVNVLVDTFRKVQSFLNAEETF 699
            L+NQ+I  SFF+GGIFL+TT+GC+YINEA+V IPLVSASQLLR  +K +LWN SNLPLRVNQ+GVMPLVFTSSVMV+ +S+ KLL  QLI I  FS L + S N TL IGKI YW +Y I V+FFTSFYS ILLDPKDI+EQFRKNSVTIK I PG+ T+NYLS TIKRLT+INA FLI+VLILLNGLEYLLP+N LNLRGFGLTSQLILVNVLVDTFRKVQ+ LN E TF
Sbjct:  201 LSNQNIFISFFVGGIFLVTTIGCIYINEAVVKIPLVSASQLLRNVNKFSLWNNSNLPLRVNQAGVMPLVFTSSVMVILTSITKLLSEQLINITFFSNLTNFSVNWTLIIGKICYWSIYSISVFFFTSFYSTILLDPKDITEQFRKNSVTIKGITPGITTQNYLSTTIKRLTMINAIFLIIVLILLNGLEYLLPLNKLNLRGFGLTSQLILVNVLVDTFRKVQNLLNTENTF 431          
BLAST of mRNA_H-elongata_contig205021.5848.1 vs. uniprot
Match: A0A1I9LVB7_9PHAE (Protein translocase subunit SecY n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVB7_9PHAE)

HSP 1 Score: 314 bits (805), Expect = 3.380e-103
Identity = 170/228 (74.56%), Postives = 193/228 (84.65%), Query Frame = 1
Query:    7 LTNQSILFSFFIGGIFLLTTVGCVYINEAMVNIPLVSASQLLRKPSKLTLWNISNLPLRVNQSGVMPLVFTSSVMVVASSVAKLLYGQLITIELFSFLNSLSTNLTLGIGKISYWVLYGILVYFFTSFYSKILLDPKDISEQFRKNSVTIKEINPGMPTRNYLSKTIKRLTIINAGFLIVVLILLNGLEYLLPINNLNLRGFGLTSQLILVNVLVDTFRKVQSFLNAE 690
            L+ Q+I  +  I GIFLLTTVGC+YINEA+V IPLV+A+QLLR  +   LWN S LPLRVNQ+GVMPLVFTSS+MV+ SS    LYGQL+ IELFSFLN LSTNLTLGIGKI YW  Y ++V+FFTSFYS I LDPKD++EQFRKNSVTIK + PG PT+ YLS TIKRLTI+NAGFL+VVLILLN LEYLLPI +LNLRGFGLTSQLILVNVLVDTFRKVQ+ LNAE
Sbjct:  202 LSKQNIAITILISGIFLLTTVGCIYINEAIVKIPLVTATQLLRNINNFWLWNESILPLRVNQAGVMPLVFTSSIMVILSSFTTFLYGQLLNIELFSFLNYLSTNLTLGIGKIFYWFTYAVIVFFFTSFYSTIFLDPKDMTEQFRKNSVTIKGLTPGKPTKEYLSLTIKRLTILNAGFLVVVLILLNCLEYLLPIGDLNLRGFGLTSQLILVNVLVDTFRKVQNLLNAE 429          
BLAST of mRNA_H-elongata_contig205021.5848.1 vs. uniprot
Match: A0A141BSM4_9PHAE (Protein translocase subunit SecY n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSM4_9PHAE)

HSP 1 Score: 313 bits (803), Expect = 6.390e-103
Identity = 170/233 (72.96%), Postives = 196/233 (84.12%), Query Frame = 1
Query:    1 LALTNQSILFSFFIGGIFLLTTVGCVYINEAMVNIPLVSASQLLRKPSKLTLWNISNLPLRVNQSGVMPLVFTSSVMVVASSVAKLLYGQLITIELFSFLNSLSTNLTLGIGKISYWVLYGILVYFFTSFYSKILLDPKDISEQFRKNSVTIKEINPGMPTRNYLSKTIKRLTIINAGFLIVVLILLNGLEYLLPINNLNLRGFGLTSQLILVNVLVDTFRKVQSFLNAEETF 699
            L L+N+SI   FF+  IFLLTTVGC+YINEA+V +PLVSASQLLR  +K +LWN SNLPLRVNQ+GVMPLVFTSSVMV+ +S+ K L+ Q I I+ FS     STN  L IGKI YW+LYGI V+FFTSFYS +LLDPKDI+EQFRKNSVTIK I PG+ T++YLS TIKRLTIINA FLI++L+LLNGLEYLLPINNLNLRGFGLTSQLILVNVLVDTFRKVQ+ LN E+ F
Sbjct:  198 LNLSNKSIFIGFFVSSIFLLTTVGCIYINEAVVKVPLVSASQLLRNVNKFSLWNNSNLPLRVNQAGVMPLVFTSSVMVLLTSITKFLFSQFINIDFFSNFTFFSTNRILLIGKIFYWLLYGISVFFFTSFYSAVLLDPKDITEQFRKNSVTIKGITPGINTQSYLSLTIKRLTIINAIFLIIILLLLNGLEYLLPINNLNLRGFGLTSQLILVNVLVDTFRKVQNLLNREDIF 430          
BLAST of mRNA_H-elongata_contig205021.5848.1 vs. uniprot
Match: A0A6B7EV55_9PHAE (Preprotein translocase secY subunit n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EV55_9PHAE)

HSP 1 Score: 309 bits (791), Expect = 4.290e-101
Identity = 169/231 (73.16%), Postives = 196/231 (84.85%), Query Frame = 1
Query:    7 LTNQSILFSFFIGGIFLLTTVGCVYINEAMVNIPLVSASQLLRKPSKLTLWNISNLPLRVNQSGVMPLVFTSSVMVVASSVAKLLYGQLITIELFSFLNSLSTNLTLGIGKISYWVLYGILVYFFTSFYSKILLDPKDISEQFRKNSVTIKEINPGMPTRNYLSKTIKRLTIINAGFLIVVLILLNGLEYLLPINNLNLRGFGLTSQLILVNVLVDTFRKVQSFLNAEETF 699
            L+ Q+IL S FI GIFLLTTVGC+YIN+A+V I LVSASQL R  +KL LWN S LPLRVNQ+GVMPLVFTSSVMV+ SS+   LYG+L++IELFSFLN LSTN+TL IGK  YW  YGILV+FFTSFYS ILLDPKD++EQFRKNSVTIK + PG  T +YLS TIKRLTI+NA FL+VVL++LNGLEYLLP+ +LNLRGFGLTSQLILVNV VDT RKV++ LNAE+ F
Sbjct:  201 LSKQNILISVFISGIFLLTTVGCIYINDAIVTIQLVSASQLSRNVNKLGLWNESKLPLRVNQAGVMPLVFTSSVMVILSSLTNFLYGKLLSIELFSFLNYLSTNVTLVIGKGFYWCAYGILVFFFTSFYSTILLDPKDMTEQFRKNSVTIKGVPPGKATESYLSITIKRLTILNAIFLVVVLVILNGLEYLLPVGDLNLRGFGLTSQLILVNVFVDTLRKVENLLNAEKMF 431          
BLAST of mRNA_H-elongata_contig205021.5848.1 vs. uniprot
Match: A0A2I4Q2J4_9PHAE (Protein translocase subunit SecY n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2J4_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 2.360e-95
Identity = 162/231 (70.13%), Postives = 193/231 (83.55%), Query Frame = 1
Query:    1 LALTNQSILFSFFIGGIFLLTTVGCVYINEAMVNIPLVSASQLLRKPSKLTLWNISNLPLRVNQSGVMPLVFTSSVMVVASSVAKLLYGQLITIELFSFLNSLSTNLTLGIGKISYWVLYGILVYFFTSFYSKILLDPKDISEQFRKNSVTIKEINPGMPTRNYLSKTIKRLTIINAGFLIVVLILLNGLEYLLPINNLNLRGFGLTSQLILVNVLVDTFRKVQSFLNAEE 693
            L L NQ+I+ + FIG +FL TT+GC+YINEAMV IPL+SASQLLRK SK +LWN S LPLRVNQ+GVMPLVFTSS+MV+ SS ++ LY +L   + FS L S+S N  L  GK  YW+ +G+LV+FFT+FYSKILLDPKDI+E+FRKNSV+IK INPG+ TRNYL+ TIK+LT INA FLI +LILLNG EY+LPINNLNLRGFGLTSQLILVNVL+DTFRKVQS L AE+
Sbjct:  200 LNLVNQNIVITSFIGSLFLFTTIGCIYINEAMVKIPLISASQLLRKVSKTSLWNNSYLPLRVNQAGVMPLVFTSSIMVILSSFSRFLYLELSNNKFFSVL-SISENSILLFGKFFYWLGFGLLVFFFTTFYSKILLDPKDIAEEFRKNSVSIKGINPGIATRNYLATTIKQLTKINATFLIFILILLNGSEYILPINNLNLRGFGLTSQLILVNVLIDTFRKVQSLLKAED 429          
BLAST of mRNA_H-elongata_contig205021.5848.1 vs. uniprot
Match: A0A8F0F797_9PHAE (Preprotein translocase subunit secY n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F797_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 1.900e-94
Identity = 154/228 (67.54%), Postives = 189/228 (82.89%), Query Frame = 1
Query:   10 TNQSILFSFFIGGIFLLTTVGCVYINEAMVNIPLVSASQLLRKPSKLTLWNISNLPLRVNQSGVMPLVFTSSVMVVASSVAKLLYGQLITIELFSFLNSLSTNLTLGIGKISYWVLYGILVYFFTSFYSKILLDPKDISEQFRKNSVTIKEINPGMPTRNYLSKTIKRLTIINAGFLIVVLILLNGLEYLLPINNLNLRGFGLTSQLILVNVLVDTFRKVQSFLNAEE 693
            TN SI+    +GGIFLLTTVGC+ INEA+V IPLVSASQLLRK SK +LW+ SNLPLR+NQ+GVMPLVFTSSVM++ SS  KL+YGQL+    FSF N LS  + L +  I YW  Y  LV+FFTSFYS ILLDPKDI+EQFRKNSV+I+ INPG+ T+ YL++T+K+L  +N+ FL++V++LLN +EYLLP+NNLNLRGFGLTSQLILVNVL+DTF+K+QS LNAEE
Sbjct:  204 TNSSIIL--LLGGIFLLTTVGCICINEAIVKIPLVSASQLLRKLSKTSLWDSSNLPLRINQAGVMPLVFTSSVMIILSSATKLIYGQLLNTGRFSFFNILSETMLLQMVPIIYWTTYSFLVFFFTSFYSNILLDPKDIAEQFRKNSVSIRGINPGISTQKYLNQTLKKLAFLNSAFLLIVILLLNAVEYLLPVNNLNLRGFGLTSQLILVNVLIDTFKKIQSLLNAEE 429          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig205021.5848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0JZP1_9PHAE1.850e-13793.13Preprotein translocase subunit secY n=1 Tax=Desmar... [more]
A0A0R6LUW4_UNDPI2.230e-11681.55Protein translocase subunit SecY n=28 Tax=Laminari... [more]
D1J735_ECTSI5.680e-11277.25Protein translocase subunit SecY n=7 Tax=Ectocarpa... [more]
A0A8F0JZQ7_9PHAE3.140e-11178.97Preprotein translocase subunit secY n=1 Tax=Chorda... [more]
D1GJR5_FUCVE2.510e-10575.32Protein translocase subunit SecY n=3 Tax=Fucaceae ... [more]
A0A1I9LVB7_9PHAE3.380e-10374.56Protein translocase subunit SecY n=1 Tax=Pleurocla... [more]
A0A141BSM4_9PHAE6.390e-10372.96Protein translocase subunit SecY n=14 Tax=Sargassa... [more]
A0A6B7EV55_9PHAE4.290e-10173.16Preprotein translocase secY subunit n=1 Tax=Clados... [more]
A0A2I4Q2J4_9PHAE2.360e-9570.13Protein translocase subunit SecY n=1 Tax=Dictyopte... [more]
A0A8F0F797_9PHAE1.900e-9467.54Preprotein translocase subunit secY n=1 Tax=Protoh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig205021contigH-elongata_contig205021:376..1077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score338.6
Seed ortholog evalue2.4e-90
Seed eggNOG ortholog2880.D1J735
Preferred namesecY
KEGG koko:K10956
KEGG TC3.A.5.4,3.A.5.8,3.A.5.9
KEGG Pathwayko03060,ko04141,ko04145,ko05110,map03060,map04141,map04145,map05110
KEGG ModuleM00401
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0008150,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009657,GO:0009668,GO:0009987,GO:0010027,GO:0016020,GO:0016043,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0061024,GO:0071840
EggNOG free text desc.protein transport
EggNOG OGs2QSNV@2759,COG0201@1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044
Hectar predicted targeting categorysignal peptide
Exons1
Model size702
Cds size702
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930149.4313865-CDS-H-elongata_contig205021:375..10771622930149.4313865-CDS-H-elongata_contig205021:375..1077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205021 376..1077 -
1691679299.8746452-CDS-H-elongata_contig205021:375..10771691679299.8746452-CDS-H-elongata_contig205021:375..1077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205021 376..1077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig205021.5848.1prot_H-elongata_contig205021.5848.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig205021 376..1077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig205021.5848.1

>prot_H-elongata_contig205021.5848.1 ID=prot_H-elongata_contig205021.5848.1|Name=mRNA_H-elongata_contig205021.5848.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=234bp
LALTNQSILFSFFIGGIFLLTTVGCVYINEAMVNIPLVSASQLLRKPSKL
TLWNISNLPLRVNQSGVMPLVFTSSVMVVASSVAKLLYGQLITIELFSFL
NSLSTNLTLGIGKISYWVLYGILVYFFTSFYSKILLDPKDISEQFRKNSV
TIKEINPGMPTRNYLSKTIKRLTIINAGFLIVVLILLNGLEYLLPINNLN
LRGFGLTSQLILVNVLVDTFRKVQSFLNAEETF*
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mRNA from alignment at H-elongata_contig205021:376..1077-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig205021.5848.1 ID=mRNA_H-elongata_contig205021.5848.1|Name=mRNA_H-elongata_contig205021.5848.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=702bp|location=Sequence derived from alignment at H-elongata_contig205021:376..1077- (Himanthalia elongata Himel1 dioecious)
TTAGCTTTAACGAATCAGAGTATTCTATTTAGCTTTTTTATTGGGGGTAT ATTTTTACTAACAACTGTTGGTTGTGTTTATATTAATGAAGCGATGGTAA ATATTCCCTTAGTTTCTGCGAGTCAATTATTAAGAAAACCTAGTAAACTT ACATTATGGAACATTAGTAATTTACCTCTTCGAGTTAATCAATCAGGAGT AATGCCTTTAGTTTTTACTTCTTCAGTTATGGTTGTTGCTTCTTCGGTGG CCAAATTACTTTATGGACAATTAATTACTATTGAGTTGTTTTCTTTTTTA AACTCTCTTTCTACAAACTTAACACTTGGAATTGGAAAAATTTCTTATTG GGTTTTATACGGAATTTTGGTTTATTTTTTTACATCATTTTATTCAAAGA TACTTTTAGATCCAAAAGATATATCGGAGCAATTTCGTAAAAATTCTGTG ACGATAAAAGAAATTAATCCGGGTATGCCTACAAGAAACTATTTATCAAA AACAATTAAAAGATTAACGATTATAAATGCTGGTTTTCTTATAGTTGTTC TTATTTTACTTAATGGTTTAGAATATTTATTACCAATAAATAATTTAAAT TTACGTGGATTTGGCTTAACTTCTCAATTAATTTTAGTTAATGTTTTAGT AGATACATTTAGAAAGGTTCAAAGTTTCTTAAATGCAGAAGAAACATTTT AA
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Coding sequence (CDS) from alignment at H-elongata_contig205021:376..1077-

>mRNA_H-elongata_contig205021.5848.1 ID=mRNA_H-elongata_contig205021.5848.1|Name=mRNA_H-elongata_contig205021.5848.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1404bp|location=Sequence derived from alignment at H-elongata_contig205021:376..1077- (Himanthalia elongata Himel1 dioecious)
TTAGCTTTAACGAATCAGAGTATTCTATTTAGCTTTTTTATTGGGGGTAT
ATTTTTACTAACAACTGTTGGTTGTGTTTATATTAATGAAGCGATGGTAA
ATATTCCCTTAGTTTCTGCGAGTCAATTATTAAGAAAACCTAGTAAACTT
ACATTATGGAACATTAGTAATTTACCTCTTCGAGTTAATCAATCAGGAGT
AATGCCTTTAGTTTTTACTTCTTCAGTTATGGTTGTTGCTTCTTCGGTGG
CCAAATTACTTTATGGACAATTAATTACTATTGAGTTGTTTTCTTTTTTA
AACTCTCTTTCTACAAACTTAACACTTGGAATTGGAAAAATTTCTTATTG
GGTTTTATACGGAATTTTGGTTTATTTTTTTACATCATTTTATTCAAAGA
TACTTTTAGATCCAAAAGATATATCGGAGCAATTTCGTAAAAATTCTGTG
ACGATAAAAGAAATTAATCCGGGTATGCCTACAAGAAACTATTTATCAAA
AACAATTAAAAGATTAACGATTATAAATGCTGGTTTTCTTATAGTTGTTC
TTATTTTACTTAATGGTTTAGAATATTTATTACCAATAAATAATTTAAAT
TTACGTGGATTTGGCTTAACTTCTCAATTAATTTTAGTTAATGTTTTAGT
AGATACATTTAGAAAGGTTCAAAGTTTCTTAAATGCAGAAGAAACATTTT
AATTAGCTTTAACGAATCAGAGTATTCTATTTAGCTTTTTTATTGGGGGT
ATATTTTTACTAACAACTGTTGGTTGTGTTTATATTAATGAAGCGATGGT
AAATATTCCCTTAGTTTCTGCGAGTCAATTATTAAGAAAACCTAGTAAAC
TTACATTATGGAACATTAGTAATTTACCTCTTCGAGTTAATCAATCAGGA
GTAATGCCTTTAGTTTTTACTTCTTCAGTTATGGTTGTTGCTTCTTCGGT
GGCCAAATTACTTTATGGACAATTAATTACTATTGAGTTGTTTTCTTTTT
TAAACTCTCTTTCTACAAACTTAACACTTGGAATTGGAAAAATTTCTTAT
TGGGTTTTATACGGAATTTTGGTTTATTTTTTTACATCATTTTATTCAAA
GATACTTTTAGATCCAAAAGATATATCGGAGCAATTTCGTAAAAATTCTG
TGACGATAAAAGAAATTAATCCGGGTATGCCTACAAGAAACTATTTATCA
AAAACAATTAAAAGATTAACGATTATAAATGCTGGTTTTCTTATAGTTGT
TCTTATTTTACTTAATGGTTTAGAATATTTATTACCAATAAATAATTTAA
ATTTACGTGGATTTGGCTTAACTTCTCAATTAATTTTAGTTAATGTTTTA
GTAGATACATTTAGAAAGGTTCAAAGTTTCTTAAATGCAGAAGAAACATT
TTAA
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