mRNA_H-elongata_contig204949.5841.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig204949.5841.1
Unique NamemRNA_H-elongata_contig204949.5841.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig204949.5841.1 vs. uniprot
Match: D7FWL0_ECTSI (Adenylosuccinate synthetase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWL0_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 7.770e-33
Identity = 59/70 (84.29%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:    1 GGEFGTTTGRPRRCGWLDIPQMRYSTLVNGFSALNLTKLDVLTGIKEVKLGVAYSYEGKYLASMPSNLNV 210
            GGEFGTTTGRPRRCGWLDIPQMRYSTLVNG+S LNLTKLDVLTG++EV++GVAY +EGK L SMPS+LNV
Sbjct:  349 GGEFGTTTGRPRRCGWLDIPQMRYSTLVNGYSVLNLTKLDVLTGMEEVQIGVAYKFEGKCLESMPSSLNV 418
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BLAST of mRNA_H-elongata_contig204949.5841.1 vs. uniprot
Match: A0A7R9U9F6_9STRA (Adenylosuccinate synthetase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9F6_9STRA)

HSP 1 Score: 119 bits (298), Expect = 4.570e-32
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:    1 GGEFGTTTGRPRRCGWLDIPQMRYSTLVNGFSALNLTKLDVLTGIKEVKLGVAYSYEGKYLASMPSNLNVRTPCCLKY 234
            GGEFGTTTGRPRRCGWLD+PQMR+S  VNGF+ALNLTKLDVLTG+ E+K+GVAY Y+G  + +MPSNL V +   ++Y
Sbjct:   74 GGEFGTTTGRPRRCGWLDVPQMRFSAQVNGFTALNLTKLDVLTGLDEIKIGVAYKYKGTRIENMPSNLQVLSEVEVEY 151
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BLAST of mRNA_H-elongata_contig204949.5841.1 vs. uniprot
Match: A0A2D4C4X2_PYTIN (Adenylosuccinate synthetase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4X2_PYTIN)

HSP 1 Score: 122 bits (306), Expect = 5.710e-31
Identity = 57/78 (73.08%), Postives = 67/78 (85.90%), Query Frame = 1 
Query:    1 GGEFGTTTGRPRRCGWLDIPQMRYSTLVNGFSALNLTKLDVLTGIKEVKLGVAYSYEGKYLASMPSNLNVRTPCCLKY 234
            G EFGTTTGRPRRCGWLDIPQMRYST+VNGF+ +NLTKLDVLTG+K+VK+GVAY ++GK L SMPSNL V     ++Y
Sbjct:  389 GAEFGTTTGRPRRCGWLDIPQMRYSTMVNGFTEVNLTKLDVLTGLKKVKIGVAYWHQGKKLESMPSNLQVLEESVVEY 466
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BLAST of mRNA_H-elongata_contig204949.5841.1 vs. uniprot
Match: A0A6A3QED0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3QED0_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.020e-30
Identity = 53/78 (67.95%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:    1 GGEFGTTTGRPRRCGWLDIPQMRYSTLVNGFSALNLTKLDVLTGIKEVKLGVAYSYEGKYLASMPSNLNVRTPCCLKY 234
            G EFGTTTGR RRCGWLDIPQMRYS +VNGF+ LNLTKLDVLTG+++VK+GVAY Y+G+ L  MPSNL +     ++Y
Sbjct:    8 GAEFGTTTGRARRCGWLDIPQMRYSNMVNGFTELNLTKLDVLTGLEKVKIGVAYWYKGQKLDGMPSNLQLLEESVVQY 85
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BLAST of mRNA_H-elongata_contig204949.5841.1 vs. uniprot
Match: A0A6T5PZ90_HETAK (Adenylosuccinate synthetase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PZ90_HETAK)

HSP 1 Score: 121 bits (303), Expect = 1.170e-30
Identity = 55/78 (70.51%), Postives = 65/78 (83.33%), Query Frame = 1 
Query:    1 GGEFGTTTGRPRRCGWLDIPQMRYSTLVNGFSALNLTKLDVLTGIKEVKLGVAYSYEGKYLASMPSNLNVRTPCCLKY 234
            GGEFGTTTGRPRRCGWLD+PQMRYST +NGF AL LTKLD LTG+ EVK+GV Y+Y+GK LA MPSNL + +   ++Y
Sbjct:  365 GGEFGTTTGRPRRCGWLDVPQMRYSTTINGFDALMLTKLDCLTGMDEVKIGVRYTYKGKALAGMPSNLKILSDVVVEY 442
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BLAST of mRNA_H-elongata_contig204949.5841.1 vs. uniprot
Match: A0A6U3BX21_9STRA (Adenylosuccinate synthetase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U3BX21_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.370e-30
Identity = 50/78 (64.10%), Postives = 67/78 (85.90%), Query Frame = 1 
Query:    1 GGEFGTTTGRPRRCGWLDIPQMRYSTLVNGFSALNLTKLDVLTGIKEVKLGVAYSYEGKYLASMPSNLNVRTPCCLKY 234
            G E+GTTTGRPRRCGWLDIPQM+YS L+NGF+++NLTK+DVLTGI E+KLG +Y Y+G+ L+SMP++L V +   ++Y
Sbjct:    7 GAEYGTTTGRPRRCGWLDIPQMKYSALINGFTSINLTKIDVLTGIPELKLGKSYKYKGETLSSMPASLEVLSNVEVQY 84
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BLAST of mRNA_H-elongata_contig204949.5841.1 vs. uniprot
Match: A0A6A3RTU6_9STRA (Adenylosuccinate synthetase (Fragment) n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3RTU6_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.880e-30
Identity = 53/78 (67.95%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:    1 GGEFGTTTGRPRRCGWLDIPQMRYSTLVNGFSALNLTKLDVLTGIKEVKLGVAYSYEGKYLASMPSNLNVRTPCCLKY 234
            G EFGT TGRPRRCGWLDIPQMRYS +VNGF+ LNLTKLDVLTG+++VK+GVAY Y+G+ L  MPSNL +     ++Y
Sbjct:   86 GAEFGTNTGRPRRCGWLDIPQMRYSNMVNGFTELNLTKLDVLTGLEKVKIGVAYWYKGQKLDGMPSNLQLLEESVVQY 163
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BLAST of mRNA_H-elongata_contig204949.5841.1 vs. uniprot
Match: A0A836CHU9_9STRA (Adenylosuccinate synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHU9_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.230e-30
Identity = 56/78 (71.79%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:    1 GGEFGTTTGRPRRCGWLDIPQMRYSTLVNGFSALNLTKLDVLTGIKEVKLGVAYSYEGKYLASMPSNLNVRTPCCLKY 234
            GGE+GTTTGR RRCGWLDIPQMRYS LVNG++ALNLTKLDVLTG+KEVK+GV Y  +GK LA MPSNL + +   ++Y
Sbjct:  302 GGEWGTTTGRSRRCGWLDIPQMRYSQLVNGYTALNLTKLDVLTGLKEVKIGVGYKSDGKLLAGMPSNLRILSGVEVEY 379
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BLAST of mRNA_H-elongata_contig204949.5841.1 vs. uniprot
Match: A0A7S3PDE3_9STRA (Adenylosuccinate synthetase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PDE3_9STRA)

HSP 1 Score: 119 bits (298), Expect = 7.070e-30
Identity = 52/78 (66.67%), Postives = 68/78 (87.18%), Query Frame = 1 
Query:    1 GGEFGTTTGRPRRCGWLDIPQMRYSTLVNGFSALNLTKLDVLTGIKEVKLGVAYSYEGKYLASMPSNLNVRTPCCLKY 234
            GGE+GTTTGRPRRCGWLDIPQM+YS ++NGF+++NLTK+DVLTGI E+KLG +Y Y+G YLASMP++L V +   ++Y
Sbjct:  373 GGEYGTTTGRPRRCGWLDIPQMKYSAVINGFTSINLTKIDVLTGIPEIKLGKSYKYKGNYLASMPASLEVLSNVEVEY 450
[Close]
BLAST of mRNA_H-elongata_contig204949.5841.1 vs. uniprot
Match: A0A7R9U9E2_9STRA (Adenylosuccinate synthetase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9E2_9STRA)

HSP 1 Score: 119 bits (298), Expect = 7.370e-30
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:    1 GGEFGTTTGRPRRCGWLDIPQMRYSTLVNGFSALNLTKLDVLTGIKEVKLGVAYSYEGKYLASMPSNLNVRTPCCLKY 234
            GGEFGTTTGRPRRCGWLD+PQMR+S  VNGF+ALNLTKLDVLTG+ E+K+GVAY Y+G  + +MPSNL V +   ++Y
Sbjct:  388 GGEFGTTTGRPRRCGWLDVPQMRFSAQVNGFTALNLTKLDVLTGLDEIKIGVAYKYKGTRIENMPSNLQVLSEVEVEY 465
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig204949.5841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWL0_ECTSI7.770e-3384.29Adenylosuccinate synthetase n=2 Tax=Ectocarpus Tax... [more]
A0A7R9U9F6_9STRA4.570e-3269.23Adenylosuccinate synthetase n=1 Tax=Pinguiococcus ... [more]
A0A2D4C4X2_PYTIN5.710e-3173.08Adenylosuccinate synthetase n=1 Tax=Pythium insidi... [more]
A0A6A3QED0_9STRA1.020e-3067.95Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A6T5PZ90_HETAK1.170e-3070.51Adenylosuccinate synthetase n=1 Tax=Heterosigma ak... [more]
A0A6U3BX21_9STRA2.370e-3064.10Adenylosuccinate synthetase n=1 Tax=Amphiprora pal... [more]
A0A6A3RTU6_9STRA2.880e-3067.95Adenylosuccinate synthetase (Fragment) n=1 Tax=Phy... [more]
A0A836CHU9_9STRA3.230e-3071.79Adenylosuccinate synthetase n=1 Tax=Tribonema minu... [more]
A0A7S3PDE3_9STRA7.070e-3066.67Adenylosuccinate synthetase n=1 Tax=Amphora coffei... [more]
A0A7R9U9E2_9STRA7.370e-3069.23Adenylosuccinate synthetase n=1 Tax=Pinguiococcus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig204949contigH-elongata_contig204949:94..914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue2.1e-27
Seed eggNOG ortholog2880.D7FWL0
Preferred nameADSS
KEGG rclassRC00458,RC00459
KEGG koko:K01939
KEGG ReactionR01135
KEGG Pathwayko00230,ko00250,ko01100,map00230,map00250,map01100
KEGG ModuleM00049
GOsGO:0000166,GO:0001882,GO:0001883,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003779,GO:0003824,GO:0003924,GO:0004019,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006106,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006520,GO:0006531,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007517,GO:0007519,GO:0008092,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009888,GO:0009987,GO:0010035,GO:0010038,GO:0014706,GO:0014902,GO:0014904,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016874,GO:0016879,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0019001,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019752,GO:0030154,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034404,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042221,GO:0042278,GO:0042301,GO:0042451,GO:0042455,GO:0042592,GO:0042692,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043565,GO:0043648,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046033,GO:0046040,GO:0046085,GO:0046086,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0046686,GO:0046716,GO:0046983,GO:0048046,GO:0048468,GO:0048513,GO:0048731,GO:0048741,GO:0048747,GO:0048856,GO:0048869,GO:0050896,GO:0051015,GO:0051146,GO:0051716,GO:0055001,GO:0055002,GO:0055086,GO:0060249,GO:0060537,GO:0060538,GO:0061061,GO:0061483,GO:0065007,GO:0065008,GO:0070887,GO:0071241,GO:0071248,GO:0071276,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901657,GO:1901659,GO:1990837
EggNOG free text desc.adenylosuccinate synthase activity
EggNOG OGsCOG0104@1,KOG1355@2759
EC6.3.4.4
COG Functional cat.F
BiGG ReactioniRC1080.CRv4_Au5_s17_g7726_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930149.045614-CDS-H-elongata_contig204949:93..1971622930149.045614-CDS-H-elongata_contig204949:93..197Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204949 94..197 -
1691679299.7284973-CDS-H-elongata_contig204949:93..1971691679299.7284973-CDS-H-elongata_contig204949:93..197Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204949 94..197 -
1622930149.0618815-CDS-H-elongata_contig204949:784..9141622930149.0618815-CDS-H-elongata_contig204949:784..914Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204949 785..914 -
1691679299.739619-CDS-H-elongata_contig204949:784..9141691679299.739619-CDS-H-elongata_contig204949:784..914Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204949 785..914 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig204949.5841.1prot_H-elongata_contig204949.5841.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig204949 94..914 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig204949.5841.1

>prot_H-elongata_contig204949.5841.1 ID=prot_H-elongata_contig204949.5841.1|Name=mRNA_H-elongata_contig204949.5841.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
GGEFGTTTGRPRRCGWLDIPQMRYSTLVNGFSALNLTKLDVLTGIKEVKL
GVAYSYEGKYLASMPSNLNVRTPCCLKY
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mRNA from alignment at H-elongata_contig204949:94..914-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig204949.5841.1 ID=mRNA_H-elongata_contig204949.5841.1|Name=mRNA_H-elongata_contig204949.5841.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=821bp|location=Sequence derived from alignment at H-elongata_contig204949:94..914- (Himanthalia elongata Himel1 dioecious)
GGAGGCGAGTTCGGCACCACCACGGGAAGGCCGCGGCGTTGCGGCTGGCT
CGACATTCCCCAGATGCGCTACTCGACCCTGGTCAACGGGTTTTCCGCGC
TCAACCTCACCAAGCTTGATGTTCTCACGGGTGCGCCCCCCGCCCTCCAT
CCCTCCTTCGTTGACCTTCCTTTTCCTTTCCTTTCCTACCCCCCCCCCAC
AATCCTAACCCCCCCACACAATCCTAACCCCCCCAATCCTCGGGCGTGCT
TGTTACAAGCGACACTGGTGCGGTAGCGTAGCCTTGGTAATGGTTGATAC
CGCGTTTTCTTTTCTCTCCCGCCTCTTGATAACGCCTCTTCGAGATAACG
CCTCTTCGATATCCAGTCAGAACCATACCTGGTGCTGTAGCGTGGTGCAG
TTGCTCACTTGGTGCACTTGAAATAGATTCCGAAGAAAATTCCGGGCGAG
CGGGCTGGCCCGGATTTCAGCAGTCAAGTCCACGTGGCGACACAGCGCTT
GCGATGTCGGTATTTTTTCTTTGAATACTGAAATGGCTTTGTGTGAAGTA
TGGGTATTTCATTGAATGTTGAGTAGTATATATTTTTGTTGGTATTTCAT
TGAAAGGAAGTAGGCCATTTTTATCATGCACCCAAAGCGCGCCCCATCTT
TTTCTTGCCTTTAAATTACGTATGTATTTTTGTGTGTGTGTGTGTGTGTG
TGGTTTACCCATCACAGGCATAAAGGAGGTAAAGCTCGGCGTTGCCTATA
GCTACGAGGGCAAGTATCTCGCCAGCATGCCTTCCAACCTCAACGTGAGA
ACACCTTGCTGTCTTAAATAC
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Coding sequence (CDS) from alignment at H-elongata_contig204949:94..914-

>mRNA_H-elongata_contig204949.5841.1 ID=mRNA_H-elongata_contig204949.5841.1|Name=mRNA_H-elongata_contig204949.5841.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig204949:94..914- (Himanthalia elongata Himel1 dioecious)
GGAGGCGAGTTCGGCACCACCACGGGAAGGCCGCGGCGTTGCGGCTGGCT
CGACATTCCCCAGATGCGCTACTCGACCCTGGTCAACGGGTTTTCCGCGC
TCAACCTCACCAAGCTTGATGTTCTCACGGGGAGGCGAGTTCGGCACCAC
CACGGGAAGGCCGCGGCGTTGCGGCTGGCTCGACATTCCCCAGATGCGCT
ACTCGACCCTGGTCAACGGGTTTTCCGCGCTCAACCTCACCAAGCTTGAT
GTTCTCACGGGCATAAAGGAGGTAAAGCTCGGCGTTGCCTATAGCTACGA
GGGCAAGTATCTCGCCAGCATGCCTTCCAACCTCAACGTGAGAACACCTT
GCTGTCTTAAATACGCATAAAGGAGGTAAAGCTCGGCGTTGCCTATAGCT
ACGAGGGCAAGTATCTCGCCAGCATGCCTTCCAACCTCAACGTGAGAACA
CCTTGCTGTCTTAAATAC
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