mRNA_H-elongata_contig107086.583.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig107086.583.1
Unique Name	mRNA_H-elongata_contig107086.583.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig107086.583.1 vs. uniprot
Match: A0A068RR32_9FUNG (Uncharacterized protein n=1 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068RR32_9FUNG)

HSP 1 Score: 50.1 bits (118), Expect = 6.280e-6
Identity = 20/35 (57.14%), Postives = 29/35 (82.86%), Query Frame = 1

Query:   28 ASAQQEMMREYPDAKIVLTSRDPDTWWKSVISTVH 132
            AS  + ++++YPDAK +LT RDPDTW+KSV +T+H
Sbjct:   75 ASFVEPLLKKYPDAKWLLTDRDPDTWYKSVKNTIH 109

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BLAST of mRNA_H-elongata_contig107086.583.1 vs. uniprot
Match: A0A077WRW2_9FUNG (Uncharacterized protein n=2 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077WRW2_9FUNG)

HSP 1 Score: 48.5 bits (114), Expect = 2.310e-5
Identity = 19/35 (54.29%), Postives = 29/35 (82.86%), Query Frame = 1

Query:   28 ASAQQEMMREYPDAKIVLTSRDPDTWWKSVISTVH 132
            AS  + ++++YPDAK +LT RDPD+W+KSV +T+H
Sbjct:   75 ASFVEPLLKKYPDAKWLLTDRDPDSWYKSVKNTIH 109

[Close]

BLAST of mRNA_H-elongata_contig107086.583.1 vs. uniprot
Match: A0A077WQR3_9FUNG (Uncharacterized protein n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077WQR3_9FUNG)

HSP 1 Score: 48.5 bits (114), Expect = 2.340e-5
Identity = 19/35 (54.29%), Postives = 29/35 (82.86%), Query Frame = 1

Query:   28 ASAQQEMMREYPDAKIVLTSRDPDTWWKSVISTVH 132
            AS  + ++++YPDAK +LT RDPD+W+KSV +T+H
Sbjct:   75 ASFVEPLLKKYPDAKWLLTDRDPDSWYKSVKNTIH 109

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BLAST of mRNA_H-elongata_contig107086.583.1 vs. uniprot
Match: D8LU57_ECTSI (UEV domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU57_ECTSI)

HSP 1 Score: 48.5 bits (114), Expect = 2.740e-5
Identity = 16/35 (45.71%), Postives = 28/35 (80.00%), Query Frame = 1

Query:   28 ASAQQEMMREYPDAKIVLTSRDPDTWWKSVISTVH 132
            AS  +E+++  PDAK+++T RDPD WW S+++++H
Sbjct:  256 ASFYKEVLQSNPDAKVIMTVRDPDAWWNSMVASIH 290

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BLAST of mRNA_H-elongata_contig107086.583.1 vs. uniprot
Match: A0A3N5V0I1_9CHLR (Sulfotransferase family protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5V0I1_9CHLR)

HSP 1 Score: 47.4 bits (111), Expect = 5.640e-5
Identity = 20/44 (45.45%), Postives = 32/44 (72.73%), Query Frame = 1

Query:    1 FTSCTLIGMASAQQEMMREYPDAKIVLTSRDPDTWWKSVISTVH 132
            + S T    A+  Q++M  YP+AKI+LT RDPD+W +SV++T++
Sbjct:   64 YQSATDWPTAAYYQDLMTVYPEAKIILTVRDPDSWHRSVMNTIY 107

[Close]

BLAST of mRNA_H-elongata_contig107086.583.1 vs. uniprot
Match: A0A068RSN5_9FUNG (Uncharacterized protein n=1 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068RSN5_9FUNG)

HSP 1 Score: 47.4 bits (111), Expect = 6.050e-5
Identity = 18/35 (51.43%), Postives = 28/35 (80.00%), Query Frame = 1

Query:   28 ASAQQEMMREYPDAKIVLTSRDPDTWWKSVISTVH 132
            AS  + ++++YPDAK +LT RDPD W++SV +T+H
Sbjct:   75 ASFVEPLLKKYPDAKWILTDRDPDNWYESVKNTIH 109

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BLAST of mRNA_H-elongata_contig107086.583.1 vs. uniprot
Match: UPI001409D966 (sulfotransferase family protein n=1 Tax=Rubrobacter marinus TaxID=2653852 RepID=UPI001409D966)

HSP 1 Score: 47.4 bits (111), Expect = 6.330e-5
Identity = 15/31 (48.39%), Postives = 28/31 (90.32%), Query Frame = 1

Query:   40 QEMMREYPDAKIVLTSRDPDTWWKSVISTVH 132
            +++MREYP+A+++LT RDPD W++S ++T++
Sbjct:   77 EDLMREYPEARVILTVRDPDRWYESTLNTIY 107

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BLAST of mRNA_H-elongata_contig107086.583.1 vs. uniprot
Match: A0A8H6Y4N9_9AGAR (Uncharacterized protein n=1 Tax=Mycena venus TaxID=2733690 RepID=A0A8H6Y4N9_9AGAR)

HSP 1 Score: 47.4 bits (111), Expect = 6.810e-5
Identity = 19/36 (52.78%), Postives = 27/36 (75.00%), Query Frame = 1

Query:   22 GMASAQQEMMREYPDAKIVLTSRDPDTWWKSVISTV 129
            GM  A+ E++  YPDAK++LT+RDPD WWKS   ++
Sbjct:  114 GMMFAE-ELLAAYPDAKVILTNRDPDRWWKSFTESI 148

[Close]

BLAST of mRNA_H-elongata_contig107086.583.1 vs. uniprot
Match: UPI001AAF28C0 (Sulfotransferase family protein n=2 Tax=Actinomadura barringtoniae TaxID=1427535 RepID=UPI001AAF28C0)

HSP 1 Score: 47.0 bits (110), Expect = 7.970e-5
Identity = 18/35 (51.43%), Postives = 27/35 (77.14%), Query Frame = 1

Query:   28 ASAQQEMMREYPDAKIVLTSRDPDTWWKSVISTVH 132
            AS  +E++  YPDAK++LT RDPD+W+ SV  T++
Sbjct:   71 ASFWRELVEAYPDAKVILTERDPDSWYDSVARTIY 105

[Close]

BLAST of mRNA_H-elongata_contig107086.583.1 vs. uniprot
Match: A0A2E7XCQ6_9GAMM (Sulfotransferase family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E7XCQ6_9GAMM)

HSP 1 Score: 47.0 bits (110), Expect = 8.380e-5
Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 1

Query:   28 ASAQQEMMREYPDAKIVLTSRDPDTWWKSVISTVH 132
            AS  +E+   YPDAK++LT RDPD W+KS+  T++
Sbjct:   73 ASYYKELAAYYPDAKVILTVRDPDAWYKSITETIY 107

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig107086.583.1 vs. uniprot

BLAST of mRNA_H-elongata_contig107086.583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10


Match Name	E-value	Identity	Description
A0A068RR32_9FUNG	6.280e-6	57.14	Uncharacterized protein n=1 Tax=Lichtheimia corymb...	[more]
A0A077WRW2_9FUNG	2.310e-5	54.29	Uncharacterized protein n=2 Tax=Lichtheimia ramosa...	[more]
A0A077WQR3_9FUNG	2.340e-5	54.29	Uncharacterized protein n=1 Tax=Lichtheimia ramosa...	[more]
D8LU57_ECTSI	2.740e-5	45.71	UEV domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A3N5V0I1_9CHLR	5.640e-5	45.45	Sulfotransferase family protein n=1 Tax=Chloroflex...	[more]
A0A068RSN5_9FUNG	6.050e-5	51.43	Uncharacterized protein n=1 Tax=Lichtheimia corymb...	[more]
UPI001409D966	6.330e-5	48.39	sulfotransferase family protein n=1 Tax=Rubrobacte...	[more]
A0A8H6Y4N9_9AGAR	6.810e-5	52.78	Uncharacterized protein n=1 Tax=Mycena venus TaxID...	[more]
UPI001AAF28C0	7.970e-5	51.43	Sulfotransferase family protein n=2 Tax=Actinomadu...	[more]
A0A2E7XCQ6_9GAMM	8.380e-5	51.43	Sulfotransferase family protein n=1 Tax=Gammaprote...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig107086	contig	H-elongata_contig107086:2..133 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	132
Cds size	108
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929601.156233-CDS-H-elongata_contig107086:1..109	1622929601.156233-CDS-H-elongata_contig107086:1..109	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig107086 2..109 -
1691679086.8663654-CDS-H-elongata_contig107086:1..109	1691679086.8663654-CDS-H-elongata_contig107086:1..109	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig107086 2..109 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929601.1832707-UTR-H-elongata_contig107086:109..133	1622929601.1832707-UTR-H-elongata_contig107086:109..133	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig107086 110..133 -
1691679086.8851109-UTR-H-elongata_contig107086:109..133	1691679086.8851109-UTR-H-elongata_contig107086:109..133	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig107086 110..133 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig107086.583.1	prot_H-elongata_contig107086.583.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig107086 2..109 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig107086:2..133-
coding sequence from alignment at H-elongata_contig107086:2..133-

protein sequence of mRNA_H-elongata_contig107086.583.1

>prot_H-elongata_contig107086.583.1 ID=prot_H-elongata_contig107086.583.1|Name=mRNA_H-elongata_contig107086.583.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=36bp
MASAQQEMMREYPDAKIVLTSRDPDTWWKSVISTVH

mRNA from alignment at H-elongata_contig107086:2..133-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig107086.583.1 ID=mRNA_H-elongata_contig107086.583.1|Name=mRNA_H-elongata_contig107086.583.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig107086:2..133- (Himanthalia elongata Himel1 dioecious)
TTTACTTCTTGTACGCTGATTGGAATGGCGTCGGCCCAACAGGAAATGAT
GCGAGAGTACCCCGACGCCAAGATCGTCTTGACATCCCGGGACCCCGACA
CATGGTGGAAGAGCGTTATCAGCACTGTCCAT

Coding sequence (CDS) from alignment at H-elongata_contig107086:2..133-

>mRNA_H-elongata_contig107086.583.1 ID=mRNA_H-elongata_contig107086.583.1|Name=mRNA_H-elongata_contig107086.583.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at H-elongata_contig107086:2..133- (Himanthalia elongata Himel1 dioecious)
ATGGCGTCGGCCCAACAGGAAATGATGCGAGAGTACCCCGACGCCAAGAT
CGTCTTGACATCCCGGGACCCCGACACATGGTGGAAGAGCGTTATCAGCA
CTGTCCATATGGCGTCGGCCCAACAGGAAATGATGCGAGAGTACCCCGAC
GCCAAGATCGTCTTGACATCCCGGGACCCCGACACATGGTGGAAGAGCGT
TATCAGCACTGTCCAT