mRNA_H-elongata_contig204326.5815.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig204326.5815.1
Unique NamemRNA_H-elongata_contig204326.5815.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig204326.5815.1 vs. uniprot
Match: D8LMD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMD5_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 8.670e-54
Identity = 85/98 (86.73%), Postives = 92/98 (93.88%), Query Frame = 1 
Query:    1 ASGQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSQTAPAHLKCPICTKIMSDAVILPCCHKSTCDCCVRRGLASSGNMSCPLCRTRGIGPDSLLPNE 294
            ASGQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLS++AP HLKCPIC+KIMSDAVILPCC KSTCD CVRR L +S +MSCPLC+TRG+GPDSLLPNE
Sbjct:  109 ASGQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNE 206
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BLAST of mRNA_H-elongata_contig204326.5815.1 vs. uniprot
Match: A0A6H5L225_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L225_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 5.230e-53
Identity = 84/98 (85.71%), Postives = 92/98 (93.88%), Query Frame = 1 
Query:    1 ASGQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSQTAPAHLKCPICTKIMSDAVILPCCHKSTCDCCVRRGLASSGNMSCPLCRTRGIGPDSLLPNE 294
            ASGQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLS++AP HLKCPIC+KIMSDAVILPCC KSTCD CVRR L +S +MSCPLC++RG+GPDSLLPNE
Sbjct:  119 ASGQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQSRGVGPDSLLPNE 216
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BLAST of mRNA_H-elongata_contig204326.5815.1 vs. uniprot
Match: A0A8K1C5H0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5H0_PYTOL)

HSP 1 Score: 88.6 bits (218), Expect = 2.210e-18
Identity = 41/96 (42.71%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:    7 GQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSQTAPAHLKCPICTKIMSDAVILPCCHKSTCDCCVRRGLASSGNMSCPLCRTRGIGPDSLLPNE 294
            G L  I   ++ F KL    GG +    LD+L    P HL CP+C ++M+DAV++PCC +S CD C+R  L    N++CPLC T  + P+ LLPN+
Sbjct:  309 GGLAVIETQNKNFSKLMTKSGGSAT---LDQLISNPPDHLACPLCKRLMNDAVLIPCCQESACDECLRSALIDH-NLTCPLCNTPNMSPEKLLPNK 400
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BLAST of mRNA_H-elongata_contig204326.5815.1 vs. uniprot
Match: A0A6A4FP78_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A4FP78_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.610e-17
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:    7 GQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSQTAPAHLKCPICTKIMSDAVILPCCHKSTCDCCVRRGLASSGNMSCPLCRTRGIGPDSLLPNE 294
            G L  I   ++ F KL    GG +    LD+     P HL CP+C ++MSDAV++PCC +S CD C+R  L     ++CPLC    + P+ LLPN+
Sbjct:  315 GGLAVIEPQNKNFSKLMALSGGSAT---LDQFISNPPEHLACPLCRRLMSDAVLIPCCQESACDECLRSALIER-KLTCPLCNVSNMSPEKLLPNK 406
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BLAST of mRNA_H-elongata_contig204326.5815.1 vs. uniprot
Match: K3X144_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X144_GLOUD)

HSP 1 Score: 84.7 bits (208), Expect = 4.720e-17
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 1 
Query:    7 GQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSQTAPAHLKCPICTKIMSDAVILPCCHKSTCDCCVRRGLASSGNMSCPLCRTRGIGPDSLLPNE 294
            G L  I   ++ F KL    GG +    LD+     P HL CP+C ++M+DAV++PCC +S CD C+R  L     ++CPLC T  + P+ LLPN+
Sbjct:  311 GGLAVIEPQNKNFSKLMAKSGGSAT---LDQFIANPPDHLACPLCKRLMNDAVLIPCCQESACDECLRSALIEK-KLTCPLCNTTNMSPEKLLPNK 402
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BLAST of mRNA_H-elongata_contig204326.5815.1 vs. uniprot
Match: A0A2P4Y5F3_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A2P4Y5F3_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 6.180e-17
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:    7 GQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSQTAPAHLKCPICTKIMSDAVILPCCHKSTCDCCVRRGLASSGNMSCPLCRTRGIGPDSLLPNE 294
            G L  I   ++ F KL    GG +    LD+     P HL CP+C ++MSDAV++PCC +S CD C+R  L     ++CPLC    + P+ LLPN+
Sbjct:  314 GGLAVIEPQNKNFSKLMARSGGSAT---LDQFISNPPEHLACPLCRRLMSDAVLIPCCQESACDECLRSALIER-KLTCPLCNVSNMSPEKLLPNK 405
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BLAST of mRNA_H-elongata_contig204326.5815.1 vs. uniprot
Match: D0NE99_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=D0NE99_PHYIT)

HSP 1 Score: 84.3 bits (207), Expect = 6.500e-17
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:    7 GQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSQTAPAHLKCPICTKIMSDAVILPCCHKSTCDCCVRRGLASSGNMSCPLCRTRGIGPDSLLPNE 294
            G L  I   ++ F KL    GG +    LD+     P HL CP+C ++MSDAV++PCC +S CD C+R  L     ++CPLC    + P+ LLPN+
Sbjct:  307 GGLAVIEPQNKNFSKLMARSGGSAT---LDQFISNPPEHLACPLCRRLMSDAVLIPCCQESACDECLRSALIER-KLTCPLCNVSNMSPEKLLPNK 398
[Close]
BLAST of mRNA_H-elongata_contig204326.5815.1 vs. uniprot
Match: A0A3R7NI29_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NI29_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 6.550e-17
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:    7 GQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSQTAPAHLKCPICTKIMSDAVILPCCHKSTCDCCVRRGLASSGNMSCPLCRTRGIGPDSLLPNE 294
            G L  I   ++ F KL    GG +    LD+     P HL CP+C ++MSDAV++PCC +S CD C+R  L     ++CPLC    + P+ LLPN+
Sbjct:  317 GGLAVIEPQNKNFSKLMARSGGSAT---LDQFISNPPEHLACPLCRRLMSDAVLIPCCQESACDECLRSALIER-KLTCPLCNVTNMSPEKLLPNK 408
[Close]
BLAST of mRNA_H-elongata_contig204326.5815.1 vs. uniprot
Match: A0A329T760_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T760_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 6.620e-17
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:    7 GQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSQTAPAHLKCPICTKIMSDAVILPCCHKSTCDCCVRRGLASSGNMSCPLCRTRGIGPDSLLPNE 294
            G L  I   ++ F KL    GG +    LD+     P HL CP+C ++MSDAV++PCC +S CD C+R  L     ++CPLC    + P+ LLPN+
Sbjct:  315 GGLAVIEPQNKNFSKLMARSGGSAT---LDQFISNPPEHLACPLCRRLMSDAVLIPCCQESACDECLRSALIER-KLTCPLCNVSNMSPEKLLPNK 406
[Close]
BLAST of mRNA_H-elongata_contig204326.5815.1 vs. uniprot
Match: A0A421G8I3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421G8I3_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 6.630e-17
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:    7 GQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSQTAPAHLKCPICTKIMSDAVILPCCHKSTCDCCVRRGLASSGNMSCPLCRTRGIGPDSLLPNE 294
            G L  I   ++ F KL    GG +    LD+     P HL CP+C ++MSDAV++PCC +S CD C+R  L     ++CPLC    + P+ LLPN+
Sbjct:  317 GGLAVIEPQNKNFSKLMARSGGSAT---LDQFISNPPEHLACPLCRRLMSDAVLIPCCQESACDECLRSALIER-KLTCPLCNVTNMSPEKLLPNK 408
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig204326.5815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMD5_ECTSI8.670e-5486.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L225_9PHAE5.230e-5385.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8K1C5H0_PYTOL2.210e-1842.71Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A4FP78_9STRA2.610e-1740.63Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
K3X144_GLOUD4.720e-1740.63Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2P4Y5F3_9STRA6.180e-1740.63Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
D0NE99_PHYIT6.500e-1740.63Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A3R7NI29_9STRA6.550e-1740.63Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A329T760_9STRA6.620e-1740.63Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A421G8I3_9STRA6.630e-1740.63Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig204326contigH-elongata_contig204326:254..1082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.6
Seed ortholog evalue3.5e-43
Seed eggNOG ortholog2880.D8LMD5
KEGG koko:K10624,ko:K15541
KEGG Pathwayko03015,map03015
EggNOG free text desc.zinc ion binding
EggNOG OGsCOG5222@1,KOG0314@2759
Ec32 ortholog descriptionDWNN domain
Ec32 orthologEc-05_002370.1
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930147.0317867-CDS-H-elongata_contig204326:253..4901622930147.0317867-CDS-H-elongata_contig204326:253..490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204326 254..490 -
1691679299.0146155-CDS-H-elongata_contig204326:253..4901691679299.0146155-CDS-H-elongata_contig204326:253..490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204326 254..490 -
1622930147.0511494-CDS-H-elongata_contig204326:1022..10821622930147.0511494-CDS-H-elongata_contig204326:1022..1082Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204326 1023..1082 -
1691679299.0241606-CDS-H-elongata_contig204326:1022..10821691679299.0241606-CDS-H-elongata_contig204326:1022..1082Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204326 1023..1082 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig204326.5815.1prot_H-elongata_contig204326.5815.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig204326 254..1082 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig204326.5815.1

>prot_H-elongata_contig204326.5815.1 ID=prot_H-elongata_contig204326.5815.1|Name=mRNA_H-elongata_contig204326.5815.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
ASGQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSQTAPAHLKCPICTKI
MSDAVILPCCHKSTCDCCVRRGLASSGNMSCPLCRTRGIGPDSLLPNE*
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mRNA from alignment at H-elongata_contig204326:254..1082-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig204326.5815.1 ID=mRNA_H-elongata_contig204326.5815.1|Name=mRNA_H-elongata_contig204326.5815.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=829bp|location=Sequence derived from alignment at H-elongata_contig204326:254..1082- (Himanthalia elongata Himel1 dioecious)
GCCTCGGGGCAGTTAGTGACCATCCGCGCCAACGACCAGGCGTTCCGCAA
GCTGAAGGAGGTAAGAGTGGGACGAGGGAGAGGTGAAGTGCTGCAAACGG
GCGGAACCGTCTAATGGAGCTCGAGAAGCGCAATAAGTGTTTTTTGTGTG
ATTGGCGGGGTGACCTTGGTGTGTTGAAGTGCCTCTCGCCTATGACGCTG
AAGGAATCATTTTCGGGGGAATATGGGTGGGGTGATAGGGGCGGAAAAAT
GATTTATTTATATATTTTTTTCAGAGGGGACTGAGCTATTCGTAGAAAAA
AAAACTGTCGTATATAATCTTGGCGTTTATCTCTAGAAACCCAACCTCGA
GATGAGTTGCTGACCTATTCTCGGCTGTGTAACGCTCCCAAGCCAAGCCA
AGCCAAGCAATGCCAAGCCAACAGTGTTCGCTAGCAAGAAGTTGTCATTG
GCAACGCAGCTCCTATCACGACGAGATCCCCAGCAGTCTAACTAACCCCC
GGGGATAAACTACCGATGGATCCCCGCTCCGTAACACGCCTCACATCCAA
ACCCCAAAACCCCAAACCAAACCTTTGGGGTCTCGCGTACAGTTCGGTGG
AGGGCAGTCCGTCCAGGGGCTACTGGATCGTCTGTCGCAAACCGCCCCGG
CGCACCTGAAATGCCCGATCTGCACGAAGATCATGTCGGACGCCGTCATC
CTGCCCTGCTGCCACAAGAGCACCTGCGACTGCTGCGTTCGGCGAGGCCT
CGCTTCGTCCGGGAACATGTCGTGCCCGCTGTGCCGAACGCGGGGCATAG
GCCCCGACAGCCTGCTACCGAACGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig204326:254..1082-

>mRNA_H-elongata_contig204326.5815.1 ID=mRNA_H-elongata_contig204326.5815.1|Name=mRNA_H-elongata_contig204326.5815.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig204326:254..1082- (Himanthalia elongata Himel1 dioecious)
GCCTCGGGGCAGTTAGTGACCATCCGCGCCAACGACCAGGCGTTCCGCAA
GCTGAAGGAGGCCTCGGGGCAGTTAGTGACCATCCGCGCCAACGACCAGG
CGTTCCGCAAGCTGAAGGAGTTCGGTGGAGGGCAGTCCGTCCAGGGGCTA
CTGGATCGTCTGTCGCAAACCGCCCCGGCGCACCTGAAATGCCCGATCTG
CACGAAGATCATGTCGGACGCCGTCATCCTGCCCTGCTGCCACAAGAGCA
CCTGCGACTGCTGCGTTCGGCGAGGCCTCGCTTCGTCCGGGAACATGTCG
TGCCCGCTGTGCCGAACGCGGGGCATAGGCCCCGACAGCCTGCTACCGAA
CGAGTGATTCGGTGGAGGGCAGTCCGTCCAGGGGCTACTGGATCGTCTGT
CGCAAACCGCCCCGGCGCACCTGAAATGCCCGATCTGCACGAAGATCATG
TCGGACGCCGTCATCCTGCCCTGCTGCCACAAGAGCACCTGCGACTGCTG
CGTTCGGCGAGGCCTCGCTTCGTCCGGGAACATGTCGTGCCCGCTGTGCC
GAACGCGGGGCATAGGCCCCGACAGCCTGCTACCGAACGAGTGA
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