mRNA_H-elongata_contig204324.5814.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig204324.5814.1
Unique NamemRNA_H-elongata_contig204324.5814.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig204324.5814.1 vs. uniprot
Match: A0A6H5KID0_9PHAE (Beta_elim_lyase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KID0_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 7.710e-23
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 QGMAVSNEGFVAIMTSKESPRALKLVVTPDDPMSGGLDVEQAETSEARTLLQLMQ 165
            QGMAVS EGFVAIMTSKES RAL+LVVTPDDPMSGGLDVEQAET EARTLLQLMQ
Sbjct:  612 QGMAVSTEGFVAIMTSKESTRALRLVVTPDDPMSGGLDVEQAETPEARTLLQLMQ 666
[Close]
BLAST of mRNA_H-elongata_contig204324.5814.1 vs. uniprot
Match: A0A4D9CZ25_9STRA (Beta_elim_lyase domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZ25_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.170e-10
Identity = 37/66 (56.06%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    1 QGMAVSNEGFVAIMTSKE----------SPR-ALKLVVTPDDPMSGGLDVEQAETSEARTLLQLMQ 165
            QG++ S  GFV ++  KE          SPR ALK+VVTP DPMS GLDV  AET EA TLLQL+Q
Sbjct:  549 QGVSTSARGFVVVLAEKEGEGQEGSEGGSPRKALKVVVTPSDPMSAGLDVHAAETPEAITLLQLLQ 614
[Close]
BLAST of mRNA_H-elongata_contig204324.5814.1 vs. uniprot
Match: K8Z7D4_NANGC (Threonine aldolase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z7D4_NANGC)

HSP 1 Score: 62.0 bits (149), Expect = 7.330e-10
Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:    1 QGMAVSNEGFVAIMTSKES----------PR-ALKLVVTPDDPMSGGLDVEQAETSEARTLLQLMQ 165
            QG++ S  GFV ++  KE           PR ALK+VVTP DPMS GLDV  AET EA TLLQL+Q
Sbjct:   85 QGVSTSERGFVVVLAEKEGEGQEGSEGGRPRKALKVVVTPSDPMSAGLDVHAAETPEAITLLQLLQ 150
[Close]
BLAST of mRNA_H-elongata_contig204324.5814.1 vs. uniprot
Match: A0A482SPV4_9ARCH (Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPV4_9ARCH)

HSP 1 Score: 55.8 bits (133), Expect = 1.160e-7
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    4 GMAVSNEGFVAIMTSKESPRALKLVVTPDDPMSGGLDVEQAETSEARTLLQLMQ 165
            GM+VS++GF   +      R +K+ VTP DPM  GLD +QAE+SEA TLLQL+Q
Sbjct:  457 GMSVSDQGFCVFLQGLICDRFVKVQVTPSDPMVYGLDRDQAESSEAVTLLQLLQ 510
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig204324.5814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KID0_9PHAE7.710e-2392.73Beta_elim_lyase domain-containing protein n=2 Tax=... [more]
A0A4D9CZ25_9STRA4.170e-1056.06Beta_elim_lyase domain-containing protein n=3 Tax=... [more]
K8Z7D4_NANGC7.330e-1054.55Threonine aldolase n=1 Tax=Nannochloropsis gaditan... [more]
A0A482SPV4_9ARCH1.160e-753.70Aminotransferase class I/II-fold pyridoxal phospha... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig204324contigH-elongata_contig204324:95..259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue3.5e-18
Seed eggNOG ortholog2880.D8LF44
Preferred nameTHA1
KEGG rclassRC00312,RC00372
KEGG koko:K01620
KEGG ReactionR00751,R06171
KEGG Pathwayko00260,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map01100,map01110,map01120,map01130,map01230
GOsGO:0001505,GO:0003674,GO:0003824,GO:0004793,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006544,GO:0006545,GO:0006566,GO:0006567,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008732,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009068,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016054,GO:0016829,GO:0016830,GO:0016832,GO:0017144,GO:0019752,GO:0042133,GO:0042136,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046395,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607
EggNOG free text desc.L-allo-threonine aldolase activity
EggNOG OGsCOG2008@1,KOG1368@2759
EC4.1.2.48
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size159
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930146.7674513-CDS-H-elongata_contig204324:94..2531622930146.7674513-CDS-H-elongata_contig204324:94..253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204324 95..253 -
1691679298.9957035-CDS-H-elongata_contig204324:94..2531691679298.9957035-CDS-H-elongata_contig204324:94..253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204324 95..253 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930146.7802114-UTR-H-elongata_contig204324:253..2591622930146.7802114-UTR-H-elongata_contig204324:253..259Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig204324 254..259 -
1691679299.0061228-UTR-H-elongata_contig204324:253..2591691679299.0061228-UTR-H-elongata_contig204324:253..259Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig204324 254..259 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig204324.5814.1prot_H-elongata_contig204324.5814.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig204324 95..253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig204324.5814.1

>prot_H-elongata_contig204324.5814.1 ID=prot_H-elongata_contig204324.5814.1|Name=mRNA_H-elongata_contig204324.5814.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MAVSNEGFVAIMTSKESPRALKLVVTPDDPMSGGLDVEQAETSEARTLLQ
LMQ
back to top

mRNA from alignment at H-elongata_contig204324:95..259-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig204324.5814.1 ID=mRNA_H-elongata_contig204324.5814.1|Name=mRNA_H-elongata_contig204324.5814.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig204324:95..259- (Himanthalia elongata Himel1 dioecious)
CAGGGCATGGCGGTCAGCAACGAAGGTTTCGTGGCCATCATGACGAGCAA
GGAGTCGCCCCGTGCCCTGAAGCTGGTGGTCACGCCTGACGACCCCATGT
CAGGCGGGCTCGACGTGGAGCAGGCGGAGACCTCGGAGGCTCGTACCCTG
CTACAGCTTATGCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig204324:95..259-

>mRNA_H-elongata_contig204324.5814.1 ID=mRNA_H-elongata_contig204324.5814.1|Name=mRNA_H-elongata_contig204324.5814.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig204324:95..259- (Himanthalia elongata Himel1 dioecious)
ATGGCGGTCAGCAACGAAGGTTTCGTGGCCATCATGACGAGCAAGGAGTC
GCCCCGTGCCCTGAAGCTGGTGGTCACGCCTGACGACCCCATGTCAGGCG
GGCTCGACGTGGAGCAGGCGGAGACCTCGGAGGCTCGTACCCTGCTACAG
CTTATGCAGATGGCGGTCAGCAACGAAGGTTTCGTGGCCATCATGACGAG
CAAGGAGTCGCCCCGTGCCCTGAAGCTGGTGGTCACGCCTGACGACCCCA
TGTCAGGCGGGCTCGACGTGGAGCAGGCGGAGACCTCGGAGGCTCGTACC
CTGCTACAGCTTATGCAG
back to top