mRNA_H-elongata_contig204073.5808.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig204073.5808.1
Unique NamemRNA_H-elongata_contig204073.5808.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig204073.5808.1 vs. uniprot
Match: A0A6H5JP97_9PHAE (KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP97_9PHAE)

HSP 1 Score: 271 bits (694), Expect = 2.120e-86
Identity = 146/237 (61.60%), Postives = 171/237 (72.15%), Query Frame = 1
Query:    1 MQDSEYLALVELYASDREALDHSFSNAWYKLTTRDMGPYSRCAGTDVPPPQAFQLPLPDPPVSLSYNYKEAMSAITDIVFSSQREIEPDIFEGQSSYAALFVTLAYQCASTFRITDYAGGCNGARIRFSPQNTWTSNIGMDLVLDLLEPVKTTYSDLSYADLIVMAGNAALKLGGDI-SLEFCDGRVDATEDDDN---ISILEP-REYDDVIAGVRDRMKIMGISLPYFVALAGRPR 696
            + D EYLA+VE +A+D+ ALD +FSNAWYKL TRDMGP+SRC GTDVPPPQ FQLPL D P  L  +Y  A  AI  I+              +S+YA  FVTLAYQCASTFR TDY GGCNGARIRF PQ+ W SN G+  VLDLL+PVK  Y D+SYADLIV+AG+ +LK GG + +L +C GRVDA  DD N   +S+LEP REYD VI GVRDRMKI G+S+   VALAGRPR
Sbjct:  106 LMDPEYLAIVEEFAADQYALDVAFSNAWYKLVTRDMGPHSRCVGTDVPPPQDFQLPLADTPRDLP-SYSGAKKAIGHILSE------------ESTYAPRFVTLAYQCASTFRSTDYMGGCNGARIRFPPQSEWASNAGLSTVLDLLQPVKDEYPDISYADLIVLAGHVSLKQGGSVPNLSYCKGRVDAERDDPNNSLLSVLEPTREYDGVIVGVRDRMKIAGLSVAQMVALAGRPR 329          
BLAST of mRNA_H-elongata_contig204073.5808.1 vs. uniprot
Match: A0A6H5JAJ7_9PHAE (KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAJ7_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 2.900e-82
Identity = 144/233 (61.80%), Postives = 164/233 (70.39%), Query Frame = 1
Query:    7 DSEYLALVELYASDREALDHSFSNAWYKLTTRDMGPYSRCAGTDVPPPQAFQLPLPDPPVSLSYNYKEAMSAITDIVFSSQREIEPDIFEGQSSYAALFVTLAYQCASTFRITDYAGGCNGARIRFSPQNTWTSNIGMDL---VLDLLEPVKTTYSDLSYADLIVMAGNAALKLGGDISLEFCDGRVDATEDDDNISILEPREYDDVIAGVRDRMKIMGISLPYFVALAGRPR 696
            D EYLAL EL+ASD+  LD +F+ AWYKLT+RDMG + RC GTDV PPQ FQLPLP+ P  L  + + A SAI  I+ S              SY ALFVTLA+QCASTFR TDY GGCNGARIRFSP+  W  N G+D    +L LL PVK  Y D+SYADLIV+AGN AL    DI L FC GRVDATE DD IS+LEPREYDDVI GV DRM+I G+S+   VALAGRPR
Sbjct:  140 DPEYLALCELFASDQAYLDTAFAAAWYKLTSRDMGQFQRCVGTDVAPPQDFQLPLPEAPTDLP-DTEGAKSAIQSILSSDP------------SYPALFVTLAWQCASTFRSTDYLGGCNGARIRFSPEKDWAGNQGLDQARGILSLLSPVKDDYQDVSYADLIVLAGNLAL----DIDLLFCAGRVDATEGDDLISVLEPREYDDVIVGVHDRMRIRGLSVAQMVALAGRPR 355          
BLAST of mRNA_H-elongata_contig204073.5808.1 vs. uniprot
Match: A0A6H5JXZ4_9PHAE (KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ4_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 6.560e-79
Identity = 142/232 (61.21%), Postives = 162/232 (69.83%), Query Frame = 1
Query:    1 MQDSEYLALVELYASDREALDHSFSNAWYKLTTRDMGPYSRCAGTDVPPPQAFQLPLPDPPVSLSYNYKEAMSAITDIVFSSQREIEPDIFEGQSSYAALFVTLAYQCASTFRITDYAGGCNGARIRFSPQNTWTSNIGMDLVLDLLEPVKTTYSDLSYADLIVMAGNAALKLGGDISLEFCDGRVDATEDDDNISILEPREYDDVIAGVRDRMKIMGISLPYFVALAGRPR 696
            + D EYLALVEL+ASD   LD +F+ AWYKLT+RDMG + RC GTDV PPQ FQLPLP+ P  L  + + A SAI  I+ S              SY ALFVTLA+QCAST+R TDY GGCNGARIRFSP+  W  N  +D VL LL  V+  Y D+SYADLIV+AGN AL L     L FC GRVDA E D+ ISILEPREYDDVI GVRDRMKI G+S+   VALAGRPR
Sbjct:  375 LYDEEYLALVELFASDLSYLDTAFAAAWYKLTSRDMGQFQRCVGTDVAPPQDFQLPLPEAPTDLP-DTEGAKSAIMSILSSDP------------SYPALFVTLAWQCASTYRSTDYLGGCNGARIRFSPERDWAGNQSLDQVLSLLSLVQDEYPDVSYADLIVLAGNLALDLD---DLPFCAGRVDAAEGDELISILEPREYDDVIVGVRDRMKIRGLSVAQMVALAGRPR 590          
BLAST of mRNA_H-elongata_contig204073.5808.1 vs. uniprot
Match: A0A6H5K5Q0_9PHAE (KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Q0_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 1.930e-73
Identity = 137/232 (59.05%), Postives = 161/232 (69.40%), Query Frame = 1
Query:    1 MQDSEYLALVELYASDREALDHSFSNAWYKLTTRDMGPYSRCAGTDVPPPQAFQLPLPDPPVSLSYNYKEAMSAITDIVFSSQREIEPDIFEGQSSYAALFVTLAYQCASTFRITDYAGGCNGARIRFSPQNTWTSNIGMDLVLDLLEPVKTTYSDLSYADLIVMAGNAALKLGGDISLEFCDGRVDATEDDDNISILEPREYDDVIAGVRDRMKIMGISLPYFVALAGRPR 696
            + D EYLALVEL+ASD+ ALD +F+  W+KLT+R+MG + RC GT+V PPQ FQLPLP+ P  L  +   A SAI  I+ S              SY ALFV LA+QCASTF  TDY GGCN ARIRFSP+  W  N G+D VL LLEPV+  Y D+SYADLIV+ GN AL +     L FC GRV+A E DD IS+LEPREYDDVI GVRDR KIMG+ +P  VALAGRPR
Sbjct:  981 LNDPEYLALVELFASDQAALDEAFAAYWWKLTSREMGQFQRCVGTNVAPPQDFQLPLPEAPADLP-DSDGAASAIVSILSSDP------------SYPALFVPLAWQCASTFHATDYPGGCNDARIRFSPEKDWAGNEGLDEVLSLLEPVRDEYPDMSYADLIVL-GNLALDID---DLPFCAGRVEAAEGDDLISVLEPREYDDVIVGVRDRAKIMGLLVPQVVALAGRPR 1195          
BLAST of mRNA_H-elongata_contig204073.5808.1 vs. uniprot
Match: A0A836BSD3_9CHLO (PEROXIDASE_4 domain-containing protein n=2 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BSD3_9CHLO)

HSP 1 Score: 234 bits (598), Expect = 9.040e-70
Identity = 123/232 (53.02%), Postives = 157/232 (67.67%), Query Frame = 1
Query:    1 MQDSEYLALVELYASDREALDHSFSNAWYKLTTRDMGPYSRCAGTDVPPPQAFQLPLPDPPVSLSYNYKEAMSAITDIVFSSQREIEPDIFEGQSSYAALFVTLAYQCASTFRITDYAGGCNGARIRFSPQNTWTSNIGMDLVLDLLEPVKTTYSDLSYADLIVMAGNAALKLGGDISLEFCDGRVDATEDDDNISILEPREYDDVIAGVRDRMKIMGISLPYFVALAGRPR 696
            ++D+EYL  V LYA ++ ALD +FS AWYKL TRDMGPYSRC G+ +PPPQ FQ PLP P   L  ++ +    I   + ++   I  D   G++SY ALFV LA+QCA++FR TDY+GGCNGARIR +PQ  W SN GMD VL++L P+K  Y  LS ADLIV+AGNAAL+  G   L+FC GR DA  D+  +  + PR++DD I  VRD   + G+S    VALAGRPR
Sbjct:  314 IKDAEYLKWVTLYAENQTALDEAFSQAWYKLMTRDMGPYSRCLGSQLPPPQPFQAPLPPPSKPLP-DFAKVSRDIKKALITASSAIGADSPGGKTSYGALFVNLAFQCAASFRQTDYSGGCNGARIRLAPQKDWPSNKGMDGVLNVLLPIKDKYPTLSVADLIVLAGNAALEDAGARKLKFCGGRSDAPADEAPLPFVPPRQFDDKIIEVRDNWVVKGLSPRDGVALAGRPR 544          
BLAST of mRNA_H-elongata_contig204073.5808.1 vs. uniprot
Match: A0A7S3ZIE7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZIE7_9EUKA)

HSP 1 Score: 214 bits (546), Expect = 8.880e-67
Identity = 112/232 (48.28%), Postives = 148/232 (63.79%), Query Frame = 1
Query:    1 MQDSEYLALVELYASDREALDHSFSNAWYKLTTRDMGPYSRCAGTDVPPPQAFQLPLPDPPVSLSYNYKEAMSAITDIVFSSQREIEPDIFEGQSSYAALFVTLAYQCASTFRITDYAGGCNGARIRFSPQNTWTSNIGMDLVLDLLEPVKTTYSDLSYADLIVMAGNAALKLGGDISLEFCDGRVDATEDDDNISILEPR---EYDDVIAGVRDRMKIMGISLPYFVALAG 687
            ++D  Y A+VE+YA D+EA D SF+ AWYKLT+RDMGP +RC G DVPPPQ FQ  LPDPP +   NY      +   + S          E   +YAALFV LA++CASTFR++DY GGCNGAR+R SP+  W +N G+D  L LL  +K  Y D+S+ADLIV+AGN A++  G + + FC GR DAT D      LEP      +D I  V D +K++G++   +VAL+G
Sbjct:    3 IRDPAYRAIVEMYAGDQEAFDRSFAAAWYKLTSRDMGPVTRCIGPDVPPPQPFQAALPDPPRNPQVNYTHVNELVRGFIASG--------LEDGENYAALFVRLAWRCASTFRMSDYTGGCNGARLRLSPERDWPANRGLDDPLRLLGFIKNQYEDISFADLIVIAGNIAIEESGGLPMTFCPGRTDAT-DGSGSKFLEPTVMGTVNDTIPEVNDYVKLLGLTPREYVALSG 225          
BLAST of mRNA_H-elongata_contig204073.5808.1 vs. uniprot
Match: A0A8J4G544_9CHLO (PEROXIDASE_4 domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4G544_9CHLO)

HSP 1 Score: 226 bits (576), Expect = 3.220e-66
Identity = 113/227 (49.78%), Postives = 155/227 (68.28%), Query Frame = 1
Query:    1 MQDSEYLALVELYASDREALDHSFSNAWYKLTTRDMGPYSRCAGTDVPPPQAFQLPLPDPPVSLSYNYKEAMSAITDIVFSSQREIEPDIFEGQSSYAALFVTLAYQCASTFRITDYAGGCNGARIRFSPQNTWTSNIGMDLVLDLLEPVKTTYSDLSYADLIVMAGNAALKLGGDISLEFCDGRVDATEDDDNISILEPREYDDVIAGVRDRMKIMGISLPYFVAL 681
            ++D  YL LV+L+A+++ ALD +FS+AWYKL TRDMGPYSRC G  VPPPQ FQ PLP PP S++ +YK    AIT  + +    I  D   G+  Y ALF TLA+QCAS+FR TDY GGCNGARIRF+PQ  W  N+ MD VL++L+P+K ++  L+YADLIV+AGN AL       ++FC GR DA   +  +++  PR +++ +  V+D  ++MG++    VAL
Sbjct:  369 LKDPIYLELVKLFAANQTALDIAFSHAWYKLVTRDMGPYSRCLGNQVPPPQPFQSPLPPPP-SVTLDYKAITKAITKALRTVSPAIVGDQVNGKPYYGALFATLAWQCASSFRQTDYTGGCNGARIRFAPQKDWPQNVAMDKVLEVLQPIKDSFPGLTYADLIVLAGNTALTDAKAKRMKFCSGRSDADPSEPPVTVYPPRVFNNKLVQVKDNAQVMGLTPREAVAL 594          
BLAST of mRNA_H-elongata_contig204073.5808.1 vs. uniprot
Match: A0A8J4F3U4_9CHLO (PEROXIDASE_4 domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F3U4_9CHLO)

HSP 1 Score: 225 bits (574), Expect = 6.290e-66
Identity = 114/232 (49.14%), Postives = 152/232 (65.52%), Query Frame = 1
Query:    1 MQDSEYLALVELYASDREALDHSFSNAWYKLTTRDMGPYSRCAGTDVPPPQAFQLPLPDPPVSLSYNYKEAMSAITDIVFSSQREIEPDIFEGQSSYAALFVTLAYQCASTFRITDYAGGCNGARIRFSPQNTWTSNIGMDLVLDLLEPVKTTYSDLSYADLIVMAGNAALKLGGDISLEFCDGRVDATEDDDNISILEPREYDDVIAGVRDRMKIMGISLPYFVALAGRPR 696
            ++D  YL LV+L+A+++ ALD +FS+AWYKL TRDMGPYSRC G  VPPPQ FQ PLP PP +   ++K    AIT  + ++   +  D+  G+  Y ALF TLA+QCAS FR TDY GGCNGARIRFSPQ  W  N+ MD VL +LEP+K ++  L+YADLIV AG+ AL       L+FC GR DA+ D+       PR + + +  ++D  ++MG++    VAL  R R
Sbjct:  369 LKDPIYLELVKLFAANQTALDIAFSHAWYKLVTRDMGPYSRCLGDQVPPPQPFQAPLPPPPATKP-DFKAVEKAITKALRTASSALPADMVGGKPYYGALFATLAWQCASNFRQTDYTGGCNGARIRFSPQKDWPQNVAMDSVLAVLEPIKASFPGLTYADLIVQAGSTALTNAKARKLKFCSGRSDASPDETPFPFQPPRVFSNKLVQLKDNAQVMGLTSREMVALQARLR 599          
BLAST of mRNA_H-elongata_contig204073.5808.1 vs. uniprot
Match: A0A835XP21_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XP21_9CHLO)

HSP 1 Score: 223 bits (567), Expect = 8.490e-65
Identity = 113/231 (48.92%), Postives = 151/231 (65.37%), Query Frame = 1
Query:    4 QDSEYLALVELYASDREALDHSFSNAWYKLTTRDMGPYSRCAGTDVPPPQAFQLPLPDPPVSLSYNYKEAMSAITDIVFSSQREIEPDIFEGQSSYAALFVTLAYQCASTFRITDYAGGCNGARIRFSPQNTWTSNIGMDLVLDLLEPVKTTYSDLSYADLIVMAGNAALKLGGDISLEFCDGRVDATEDDDNISILEPREYDDVIAGVRDRMKIMGISLPYFVALAGRPR 696
            +D  +L  V++YA ++ ALD +FS+AWYKL TRD+GP+SRC G+ VPPPQ FQ PLP PP+    +YK+    I   + +  + +  D   G+  Y ALFV LA+QCA+ +R TDY+GGCNGARIR +PQ  W  N G D +L +L PV+  Y  LSYADLIV+AG  AL+  G   + F  GR DA  D+  +    PRE+DD I   RD M++MG++   +VALAGRPR
Sbjct:  366 KDPGFLKWVKIYAENQTALDEAFSHAWYKLMTRDVGPHSRCLGSQVPPPQPFQAPLP-PPLKPLPDYKKVARDIARALNAPSKALPADTVGGKPYYGALFVHLAFQCAANYRQTDYSGGCNGARIRLAPQKDWPLNRGADSILKVLTPVRAAYPTLSYADLIVLAGGVALEEAGADHIAFVGGRSDAPSDEAPLPFQPPREFDDKILEARDNMQVMGLTAREWVALAGRPR 595          
BLAST of mRNA_H-elongata_contig204073.5808.1 vs. uniprot
Match: A0A8J4B542_9CHLO (PEROXIDASE_4 domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B542_9CHLO)

HSP 1 Score: 220 bits (561), Expect = 5.080e-64
Identity = 111/227 (48.90%), Postives = 148/227 (65.20%), Query Frame = 1
Query:    1 MQDSEYLALVELYASDREALDHSFSNAWYKLTTRDMGPYSRCAGTDVPPPQAFQLPLPDPPVSLSYNYKEAMSAITDIVFSSQREIEPDIFEGQSSYAALFVTLAYQCASTFRITDYAGGCNGARIRFSPQNTWTSNIGMDLVLDLLEPVKTTYSDLSYADLIVMAGNAALKLGGDISLEFCDGRVDATEDDDNISILEPREYDDVIAGVRDRMKIMGISLPYFVAL 681
            ++D  YL LV+L+A+++ ALD +FS+AWYKL TRDMGPYSRC G  VPPPQ FQ PLP PP  +  +YK    AIT  +      +  D   G+  Y ALF TLA+QCAS+FR TDY GGCNGARIR +PQ  W  N+ MD VL +LEP+K ++  L+YADLIV+AGN AL       + FC GR DA  D+  +++   R ++D +  ++D   +MG++    VAL
Sbjct:  371 LKDPIYLELVKLFAANQTALDIAFSHAWYKLVTRDMGPYSRCLGDQVPPPQPFQAPLPPPPAKIP-DYKAVTKAITKALRVISPALPYDPVNGKPYYGALFATLAWQCASSFRQTDYTGGCNGARIRLAPQKDWPQNVAMDKVLKVLEPIKDSFPGLTYADLIVLAGNTALTDAKAKGMRFCGGRSDADSDEPPVTVTPQRVFNDKLVQLKDNAIVMGLTFREAVAL 596          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig204073.5808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JP97_9PHAE2.120e-8661.60KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JAJ7_9PHAE2.900e-8261.80KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JXZ4_9PHAE6.560e-7961.21KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5K5Q0_9PHAE1.930e-7359.05KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A836BSD3_9CHLO9.040e-7053.02PEROXIDASE_4 domain-containing protein n=2 Tax=Eda... [more]
A0A7S3ZIE7_9EUKA8.880e-6748.28Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A8J4G544_9CHLO3.220e-6649.78PEROXIDASE_4 domain-containing protein n=1 Tax=Vol... [more]
A0A8J4F3U4_9CHLO6.290e-6649.14PEROXIDASE_4 domain-containing protein n=1 Tax=Vol... [more]
A0A835XP21_9CHLO8.490e-6548.92Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A8J4B542_9CHLO5.080e-6448.90PEROXIDASE_4 domain-containing protein n=2 Tax=Vol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig204073contigH-elongata_contig204073:2..1064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score212.2
Seed ortholog evalue2.5e-52
Seed eggNOG ortholog4792.ETI35845
Preferred namekatG
KEGG rclassRC00034,RC00213,RC00767,RC02141
KEGG koko:K03782
KEGG ReactionR00602,R00698,R02596,R02670,R03919,R04007,R07443,R11906
KEGG Pathwayko00360,ko00380,ko00940,ko00983,ko01100,ko01110,map00360,map00380,map00940,map00983,map01100,map01110
GOsGO:0000003,GO:0000302,GO:0003674,GO:0003824,GO:0004096,GO:0004601,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0007154,GO:0008150,GO:0008152,GO:0009056,GO:0009266,GO:0009267,GO:0009408,GO:0009605,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010035,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0019953,GO:0020037,GO:0022414,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0034599,GO:0034605,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042542,GO:0042594,GO:0042737,GO:0042743,GO:0042744,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0046677,GO:0046906,GO:0048037,GO:0050896,GO:0051186,GO:0051187,GO:0051704,GO:0051716,GO:0055114,GO:0070301,GO:0070887,GO:0071236,GO:0071496,GO:0072593,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901363,GO:1901700,GO:1901701,GO:1990748
EggNOG free text desc.Peroxidase
EggNOG OGs2QTDY@2759,3QB2Z@4776,COG0685@1
EC1.11.1.21
COG Functional cat.E
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size696
Cds size696
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930146.0766573-CDS-H-elongata_contig204073:1..2711622930146.0766573-CDS-H-elongata_contig204073:1..271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204073 2..271 -
1691679298.6762307-CDS-H-elongata_contig204073:1..2711691679298.6762307-CDS-H-elongata_contig204073:1..271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204073 2..271 -
1622930146.087632-CDS-H-elongata_contig204073:638..10641622930146.087632-CDS-H-elongata_contig204073:638..1064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204073 639..1064 -
1691679298.70222-CDS-H-elongata_contig204073:638..10641691679298.70222-CDS-H-elongata_contig204073:638..1064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204073 639..1064 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig204073.5808.1prot_H-elongata_contig204073.5808.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig204073 2..1064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig204073.5808.1

>prot_H-elongata_contig204073.5808.1 ID=prot_H-elongata_contig204073.5808.1|Name=mRNA_H-elongata_contig204073.5808.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=232bp
MQDSEYLALVELYASDREALDHSFSNAWYKLTTRDMGPYSRCAGTDVPPP
QAFQLPLPDPPVSLSYNYKEAMSAITDIVFSSQREIEPDIFEGQSSYAAL
FVTLAYQCASTFRITDYAGGCNGARIRFSPQNTWTSNIGMDLVLDLLEPV
KTTYSDLSYADLIVMAGNAALKLGGDISLEFCDGRVDATEDDDNISILEP
REYDDVIAGVRDRMKIMGISLPYFVALAGRPR
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mRNA from alignment at H-elongata_contig204073:2..1064-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig204073.5808.1 ID=mRNA_H-elongata_contig204073.5808.1|Name=mRNA_H-elongata_contig204073.5808.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1063bp|location=Sequence derived from alignment at H-elongata_contig204073:2..1064- (Himanthalia elongata Himel1 dioecious)
ATGCAGGATTCGGAATATCTGGCTCTCGTGGAATTGTACGCCAGCGATCG GGAAGCGCTAGATCACAGTTTTTCCAATGCGTGGTACAAGCTCACAACAC GCGACATGGGACCTTACAGCCGTTGCGCTGGCACGGACGTCCCACCCCCG CAAGCATTCCAGCTTCCTTTACCCGACCCCCCGGTTTCTCTGAGCTACAA CTATAAGGAGGCGATGAGCGCTATAACTGATATAGTTTTTTCCTCCCAGC GCGAGATTGAGCCGGATATATTCGAAGGCCAGTCCTCCTACGCTGCCTTG TTCGTTACTCTGGCTTACCAGTGCGCCTCCACATTTCGTATCACTGATTA CGCGGGTGGCTGCAATGGCGCAAGGATACGGTTCTCTCCGCAAAATACTT GGACCAGCAATATCGGCATGGATCTGGTGCGCGTTTGAAATGATGGGCAT ATATTTCATTATAGATCGCTAGGCTATTGTCGATATTATGCGCAACGATT GTTCTGGATATCCTCTGTTGAGTCAGCAGTATTGTGATGCAATATTTGCA CGTGTGGGCTGTCTCCCCACGTAAAGCCTATACTTATTACTTCCGGGACC AGTATACTATCAGCTATTATTTTTCACCTTTGCGGAACGCTTCACGCGTT TGATAACTTCTACCAAACAGTTCTTCCAGAGTGGTCTGCAACCTTCCTAT GAAGGAAGATATTCGGGTGCACTATCGCTGAAAGTATGATCTCAACGTAA TTATTTTCCTCGTGCCCCCACGTTTTATGCTGCGTCGTAACAGGTACTCG ACTTGCTAGAGCCTGTCAAGACGACTTACTCTGACCTCTCATATGCTGAC CTTATTGTAATGGCTGGTAACGCTGCTCTCAAACTGGGTGGCGACATCAG CTTGGAATTCTGCGATGGCCGTGTGGACGCGACTGAAGACGACGATAATA TTTCTATTCTCGAACCTCGAGAGTACGATGACGTGATTGCGGGCGTTCGC GATCGCATGAAGATAATGGGAATCTCCTTGCCTTATTTCGTCGCGCTCGC CGGTCGCCCCCGA
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Coding sequence (CDS) from alignment at H-elongata_contig204073:2..1064-

>mRNA_H-elongata_contig204073.5808.1 ID=mRNA_H-elongata_contig204073.5808.1|Name=mRNA_H-elongata_contig204073.5808.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1392bp|location=Sequence derived from alignment at H-elongata_contig204073:2..1064- (Himanthalia elongata Himel1 dioecious)
ATGCAGGATTCGGAATATCTGGCTCTCGTGGAATTGTACGCCAGCGATCG
GGAAGCGCTAGATCACAGTTTTTCCAATGCGTGGTACAAGCTCACAACAC
GCGACATGGGACCTTACAGCCGTTGCGCTGGCACGGACGTCCCACCCCCG
CAAGCATTCCAGCTTCCTTTACCCGACCCCCCGGTTTCTCTGAGCTACAA
CTATAAGGAGGCGATGAGCGCTATAACTGATATAGTTTTTTCCTCCCAGC
GCGAGATTGAGCCGGATATATTCGAAGGCCAGTCCTCCTACGCTGCCTTG
TTCGTTACTCTGGCTTACCAGTGCGCCTCCACATTTCGTATCACTGATTA
CGCGGGTGGCTGCAATGGCGCAAGGATACGGTTCTCTCCGCAAAATACTT
GGACCAGCAATATCGGCATGGATCTGATGCAGGATTCGGAATATCTGGCT
CTCGTGGAATTGTACGCCAGCGATCGGGAAGCGCTAGATCACAGTTTTTC
CAATGCGTGGTACAAGCTCACAACACGCGACATGGGACCTTACAGCCGTT
GCGCTGGCACGGACGTCCCACCCCCGCAAGCATTCCAGCTTCCTTTACCC
GACCCCCCGGTTTCTCTGAGCTACAACTATAAGGAGGCGATGAGCGCTAT
AACTGATATAGTTTTTTCCTCCCAGCGCGAGATTGAGCCGGATATATTCG
AAGGCCAGTCCTCCTACGCTGCCTTGTTCGTTACTCTGGCTTACCAGTGC
GCCTCCACATTTCGTATCACTGATTACGCGGGTGGCTGCAATGGCGCAAG
GATACGGTTCTCTCCGCAAAATACTTGGACCAGCAATATCGGCATGGATC
TGGTACTCGACTTGCTAGAGCCTGTCAAGACGACTTACTCTGACCTCTCA
TATGCTGACCTTATTGTAATGGCTGGTAACGCTGCTCTCAAACTGGGTGG
CGACATCAGCTTGGAATTCTGCGATGGCCGTGTGGACGCGACTGAAGACG
ACGATAATATTTCTATTCTCGAACCTCGAGAGTACGATGACGTGATTGCG
GGCGTTCGCGATCGCATGAAGATAATGGGAATCTCCTTGCCTTATTTCGT
CGCGCTCGCCGGTCGCCCCCGAGTACTCGACTTGCTAGAGCCTGTCAAGA
CGACTTACTCTGACCTCTCATATGCTGACCTTATTGTAATGGCTGGTAAC
GCTGCTCTCAAACTGGGTGGCGACATCAGCTTGGAATTCTGCGATGGCCG
TGTGGACGCGACTGAAGACGACGATAATATTTCTATTCTCGAACCTCGAG
AGTACGATGACGTGATTGCGGGCGTTCGCGATCGCATGAAGATAATGGGA
ATCTCCTTGCCTTATTTCGTCGCGCTCGCCGGTCGCCCCCGA
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