prot_H-elongata_contig203657.5793.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig203657.5793.1
Unique Nameprot_H-elongata_contig203657.5793.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length46
Homology
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BLAST of mRNA_H-elongata_contig203657.5793.1 vs. uniprot
Match: D8LGH6_ECTSI (5'-nucleotidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGH6_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.480e-16
Identity = 35/44 (79.55%), Postives = 42/44 (95.45%), Query Frame = 0 
Query:    1 ISVGFLKLDEHMMEKLPRYAQAYDVVIIGDGDVSYTNEILHEIV 44
            I+VGFLKLD H+++KLPRYAQAYDVVI+GDGD+SY NEILHE+V
Sbjct:  400 ITVGFLKLDGHVLDKLPRYAQAYDVVILGDGDMSYANEILHEVV 443
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BLAST of mRNA_H-elongata_contig203657.5793.1 vs. uniprot
Match: A0A836CLU8_9STRA (5'-nucleotidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLU8_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 7.800e-13
Identity = 27/45 (60.00%), Postives = 40/45 (88.89%), Query Frame = 0 
Query:    1 ISVGFLKLDEHMMEKLPRYAQAYDVVIIGDGDVSYTNEILHEIVD 45
            I+VGFLK++E  ++K PRYAQA+DVV++G+GD+SY NE+L+E+ D
Sbjct:  288 ITVGFLKMEEDFLDKFPRYAQAFDVVVVGNGDLSYVNELLYEVTD 332
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig203657.5793.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGH6_ECTSI1.480e-1679.555'-nucleotidase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A836CLU8_9STRA7.800e-1360.005'-nucleotidase n=1 Tax=Tribonema minus TaxID=3033... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023214HAD superfamilyGENE3D3.40.50.1000coord: 1..44
e-value: 4.1E-8
score: 35.0
IPR006434Pyrimidine 5'-nucleotidase, eukaryoticPFAMPF05822UMPH-1coord: 1..43
e-value: 2.2E-5
score: 24.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig203657contigH-elongata_contig203657:937..1074 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig203657.5793.1mRNA_H-elongata_contig203657.5793.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig203657 937..1074 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig203657.5793.1 ID=prot_H-elongata_contig203657.5793.1|Name=mRNA_H-elongata_contig203657.5793.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
ISVGFLKLDEHMMEKLPRYAQAYDVVIIGDGDVSYTNEILHEIVD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023214HAD_sf
IPR006434Pyrimidine_nucleotidase_eu