prot_H-elongata_contig20336.5776.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig20336.5776.1
Unique Nameprot_H-elongata_contig20336.5776.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length124
Homology
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BLAST of mRNA_H-elongata_contig20336.5776.1 vs. uniprot
Match: A0A6H5L4W1_9PHAE (PARP-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W1_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.270e-31
Identity = 56/105 (53.33%), Postives = 73/105 (69.52%), Query Frame = 0 
Query:   22 NPSWRKLERDSYVIVSA-AKGTARCGVCQSKIKRGEIKLGVFYTHEDKFTLVRWYHRRCVIAPECLKNSMDLCGIEDLRGDDLEVVLRWL--GVVGPVKERVWSA 123
            NP W++L  + +VI  A   G  RC  C  KI  G+++LG FY HED+FTL+RW+H+ CV APECL + MDLCGIEDL  +D++ V RWL  G  GPVK+R W+A
Sbjct:   65 NP-WKELAPEDFVIGYARGLGRVRCSSCGCKISAGQLQLGAFYMHEDRFTLLRWHHQSCVDAPECLTSPMDLCGIEDLSPEDVDEVCRWLAHGRSGPVKDRTWTA 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20336.5776.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4W1_9PHAE1.270e-3153.33PARP-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001510Zinc finger, PARP-typeSMARTSM01336zf_PARP_3coord: 36..111
e-value: 3.4E-4
score: 25.6
IPR001510Zinc finger, PARP-typePFAMPF00645zf-PARPcoord: 38..104
e-value: 1.6E-8
score: 35.3
IPR001510Zinc finger, PARP-typePROSITEPS50064PARP_ZN_FINGER_2coord: 33..114
score: 11.059
IPR036957Zinc finger, PARP-type superfamilyGENE3D3.30.1740.10coord: 24..118
e-value: 1.4E-10
score: 43.1
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 32..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20336contigH-elongata_contig20336:2909..4728 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20336.5776.1mRNA_H-elongata_contig20336.5776.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig20336 661..5291 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig20336.5776.1 ID=prot_H-elongata_contig20336.5776.1|Name=mRNA_H-elongata_contig20336.5776.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MAAVATRNSSSTKKSTLKKPTNPSWRKLERDSYVIVSAAKGTARCGVCQS
KIKRGEIKLGVFYTHEDKFTLVRWYHRRCVIAPECLKNSMDLCGIEDLRG
DDLEVVLRWLGVVGPVKERVWSA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001510Znf_PARP
IPR036957Znf_PARP_sf