mRNA_H-elongata_contig20316.5765.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20316.5765.1
Unique NamemRNA_H-elongata_contig20316.5765.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20316.5765.1 vs. uniprot
Match: D8LTX8_ECTSI (MyTH4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTX8_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 2.090e-39
Identity = 69/132 (52.27%), Postives = 92/132 (69.70%), Query Frame = 1
Query:    1 MALEPFARDHYNLTRKGIFGMTKRTPIKGLLSWKSQPIMTPLTTACKEDAELGVESLITFRIIMGYMGDRLAQDENIIILKGLQARLMKGSEEYIDEVFCQVCKQTTLNPRVNSDIRGWRLLLSILAVVLPS 396
            MALEP+AR+ YN  RKG+ G  KRTP++ LLSWK + I  PLT AC +   +  E +  F  IM YMGD+ A++  + ++K L  RL+  ++E+ DE+ CQVCKQTT NP  NSD+RGW+L+LSILAV  PS
Sbjct:  136 MALEPYAREMYNTVRKGLLGK-KRTPMETLLSWKGKQITVPLTIACNQAKAVSSECVACFGDIMVYMGDKKAKESGMQLIKSLHTRLLASTQEFRDEIICQVCKQTTSNPDANSDLRGWQLILSILAVATPS 266          
BLAST of mRNA_H-elongata_contig20316.5765.1 vs. uniprot
Match: A0A7S4A7X3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7X3_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.040e-20
Identity = 52/127 (40.94%), Postives = 72/127 (56.69%), Query Frame = 1
Query:   16 FARDHYNLTRKGIFGMTKRTPIKGLLSWKSQPIMTPLTTACKEDAELGVESLITFRIIMGYMGDRLAQDENIIILKGLQARLMKGSEEYIDEVFCQVCKQTTLNPRVNSDIRGWRLLLSILAVVLPS 396
            FA+ H+ + RKG+F    RT +  +  WK   +   L  +C  DA+L  E+L   R + GYMGDR +          L  +L++  +E  DEV+CQ+ KQTTLNP   S IRGW LLLS+L+   PS
Sbjct:  306 FAKAHFQMHRKGLF--KARTELDKICRWKRATMKLALLESCCRDADLLAEALQAHRNVTGYMGDRSSSKNKDGHRTKLIGQLLRCKQELRDEVYCQLVKQTTLNPSSESAIRGWELLLSVLSTCPPS 430          
BLAST of mRNA_H-elongata_contig20316.5765.1 vs. uniprot
Match: A0A7S3JVL0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JVL0_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.940e-16
Identity = 49/126 (38.89%), Postives = 70/126 (55.56%), Query Frame = 1
Query:   16 FARDHYNLTRKGIFGMTKRTPIKGLLSWKSQPIMTPLTTACKEDAELGVESLITFRIIMGYMGDRLAQDENIIILKGLQARLMKGSEEYIDEVFCQVCKQTTLNPRVNSDIRGWRLLLSILAVVLP 393
            FA  H+ L RKG+F    +T +  +L WKS  I T L     +D EL  E++ TFR I GYMGDR +   +I     L + +++  EE  +E +CQ+ KQ T NP + S  +GW+L+   LA   P
Sbjct:  185 FAEAHFQLHRKGMF--KSKTDLDKILRWKSDLIKTALLNF--KDTELAAEAVQTFRNITGYMGDRGSGKASIEHCTKLLSNMLQSPEELRNEAYCQLIKQLTENPSLESCTKGWQLMCVFLATFPP 306          
BLAST of mRNA_H-elongata_contig20316.5765.1 vs. uniprot
Match: W8ANT9_CERCA (Rho GTPase-activating protein 39 n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8ANT9_CERCA)

HSP 1 Score: 79.7 bits (195), Expect = 4.100e-15
Identity = 48/135 (35.56%), Postives = 80/135 (59.26%), Query Frame = 1
Query:    7 LEPFARDHYNLTRKGIFGMTKRTPIKGLLSWKSQPIMTPLTTACKE--DAELGVESLITFRIIMGYMGDRLAQDE---NIIILKGLQARLMKGSEEYIDEVFCQVCKQTTLNPRVNSDIRGWRLLLSILAVVLPS 396
            +E FA D+ NL  KGIF   K++ ++ +LSW  +PI  P+    ++  D +  +E    F+++  YMGDR A+     N +++  + A L +  ++  DE++ Q+C+QTT NP+ +S IRGW L+   L+ V PS
Sbjct:   45 IEKFAADNLNLHSKGIF--RKKSSVRDMLSWTPEPISRPMLALSRDKTDKKTAIE---LFKLVQIYMGDRKARPGMSLNSVVIDIIVAALPQ--QQLRDELYVQLCRQTTENPKRDSLIRGWELMAICLSFVPPS 172          
BLAST of mRNA_H-elongata_contig20316.5765.1 vs. uniprot
Match: A0A7F5RC37_AGRPL (rho GTPase-activating protein 39 n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A7F5RC37_AGRPL)

HSP 1 Score: 79.7 bits (195), Expect = 8.820e-15
Identity = 51/133 (38.35%), Postives = 75/133 (56.39%), Query Frame = 1
Query:    7 LEPFARDHYNLTRKGIFGMTKRTPIKGLLSWKSQPIMTPLTTACKEDAELGVESLITFRIIMGYMGDRLAQDE---NIIILKGLQARLMKGSEEYIDEVFCQVCKQTTLNPRVNSDIRGWRLLLSILAVVLPS 396
            +E FA D+ NL  +G+F   ++T ++ LLSW S+ +  PL  + K    L  ++L  FR +  YMGDR A+     N ++++ +   L        DE+F Q+CKQTT NPR  S +RGW LL   LA + PS
Sbjct:  250 MEKFAADNLNLGGRGLF--RRKTSVRELLSWTSRGLTRPLLASSKP---LAKQALDMFRQVQMYMGDRKARPGTSLNSLLVEIIN--LAHAQPVLRDELFVQLCKQTTENPRRESLVRGWELLTITLAFIPPS 375          
BLAST of mRNA_H-elongata_contig20316.5765.1 vs. uniprot
Match: A0A811TWD6_CERCA ((Mediterranean fruit fly) hypothetical protein n=5 Tax=Ceratitis capitata TaxID=7213 RepID=A0A811TWD6_CERCA)

HSP 1 Score: 79.7 bits (195), Expect = 9.460e-15
Identity = 48/135 (35.56%), Postives = 80/135 (59.26%), Query Frame = 1
Query:    7 LEPFARDHYNLTRKGIFGMTKRTPIKGLLSWKSQPIMTPLTTACKE--DAELGVESLITFRIIMGYMGDRLAQDE---NIIILKGLQARLMKGSEEYIDEVFCQVCKQTTLNPRVNSDIRGWRLLLSILAVVLPS 396
            +E FA D+ NL  KGIF   K++ ++ +LSW  +PI  P+    ++  D +  +E    F+++  YMGDR A+     N +++  + A L +  ++  DE++ Q+C+QTT NP+ +S IRGW L+   L+ V PS
Sbjct: 1060 IEKFAADNLNLHSKGIF--RKKSSVRDMLSWTPEPISRPMLALSRDKTDKKTAIE---LFKLVQIYMGDRKARPGMSLNSVVIDIIVAALPQ--QQLRDELYVQLCRQTTENPKRDSLIRGWELMAICLSFVPPS 1187          
BLAST of mRNA_H-elongata_contig20316.5765.1 vs. uniprot
Match: UPI001AE2CA97 (rho GTPase-activating protein 39-like n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=UPI001AE2CA97)

HSP 1 Score: 79.0 bits (193), Expect = 1.700e-14
Identity = 49/133 (36.84%), Postives = 75/133 (56.39%), Query Frame = 1
Query:    7 LEPFARDHYNLTRKGIFGMTKRTPIKGLLSWKSQPIMTPLTTACKEDAELGVESLITFRIIMGYMGDRLAQDE---NIIILKGLQARLMKGSEEYIDEVFCQVCKQTTLNPRVNSDIRGWRLLLSILAVVLPS 396
            +E +A+D+ N+ ++G+F   ++  +K +LSW S+ I  PLT  C  +     E++  F++I  YMGDR A+     N + L    +  ++ +    DE+F Q+CKQTT NPR  S  RGW LL   LA   PS
Sbjct:  493 IEKYAQDNMNIQKRGLF--RRKMTVKDILSWTSEGISKPLT--CLSEKGSKKEAIELFKLIQIYMGDRKAKAGMTINSVALDVTTSGYLRSTLR--DEIFVQLCKQTTENPRKESLRRGWELLAICLACFPPS 619          
BLAST of mRNA_H-elongata_contig20316.5765.1 vs. uniprot
Match: UPI001C921242 (rho GTPase-activating protein 39-like isoform X1 n=4 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C921242)

HSP 1 Score: 79.0 bits (193), Expect = 1.720e-14
Identity = 47/131 (35.88%), Postives = 73/131 (55.73%), Query Frame = 1
Query:    7 LEPFARDHYNLTRKGIFGMTKRTPIKGLLSWKSQPIMTPLTTACKEDAELGVESLITFRIIMGYMGDRLAQDENIIILKGLQARLMKGSEEYI-DEVFCQVCKQTTLNPRVNSDIRGWRLLLSILAVVLPS 396
            +E +A+D+ NL ++GIF   K+  ++ +LSW   PI  P+   C  D  L  ++   +++I  YMGDR A+    +   G +   +  S+  + DE++ QVC+QTT NPR +S  RGW LL   L    PS
Sbjct:  663 IEKYAKDNLNLHKRGIF--RKKNTVRDMLSWSKDPISQPMI--CTLDKALKKDACEVYKLIQIYMGDRKAKPGMTLNSVGAELAGLGWSKPGLRDEIYVQVCRQTTENPRRDSLRRGWELLAICLQFFPPS 789          
BLAST of mRNA_H-elongata_contig20316.5765.1 vs. uniprot
Match: UPI001ED89043 (uncharacterized protein LOC124172941 isoform X1 n=2 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED89043)

HSP 1 Score: 79.0 bits (193), Expect = 1.730e-14
Identity = 48/131 (36.64%), Postives = 71/131 (54.20%), Query Frame = 1
Query:    7 LEPFARDHYNLTRKGIFGMTKRTPIKGLLSWKSQPIMTPLTTACKEDAELGVESLITFRIIMGYMGDRLAQDENIIILKGLQARLMKGSEEYI-DEVFCQVCKQTTLNPRVNSDIRGWRLLLSILAVVLPS 396
            +E +A+D+ N+ +KGIF   K+  ++ +LSW   PI  P+     ED  L  E+   F+++  YMGDR A+    +    L       S+  + DE++ Q+C+QTT NPR  S  RGW LL   LA   PS
Sbjct:  737 IEKYAQDNLNIHKKGIF--RKKFSVRDMLSWSKDPIRKPMLVL--EDKNLKKEACEVFKLVQIYMGDRKAKPGMTLNSVALDLCSKAYSQPRLRDELYVQICRQTTENPRRESLRRGWELLALCLAFFPPS 863          
BLAST of mRNA_H-elongata_contig20316.5765.1 vs. uniprot
Match: A0A1B0BKM6_9MUSC (Uncharacterized protein n=5 Tax=Glossina TaxID=7393 RepID=A0A1B0BKM6_9MUSC)

HSP 1 Score: 79.0 bits (193), Expect = 1.750e-14
Identity = 49/135 (36.30%), Postives = 78/135 (57.78%), Query Frame = 1
Query:    7 LEPFARDHYNLTRKGIFGMTKRTPIKGLLSWKSQPIMTPLTTAC--KEDAELGVESLITFRIIMGYMGDRLAQ---DENIIILKGLQARLMKGSEEYIDEVFCQVCKQTTLNPRVNSDIRGWRLLLSILAVVLPS 396
            +E FA D+ NL  KGIF   K++ ++ +LSW S+ I  P+      K D ++ +E    F+++  YMGDR A+     N + +  + A L +  ++  DE++ Q+C+QTT NP+  S IRGW L+   L+ V PS
Sbjct: 1045 IEKFAADNLNLHSKGIF--RKKSSVRDMLSWTSEAISRPMLALSRDKNDKKIAIE---LFKLVQIYMGDRKARAGMSLNSVAIDVITAALPQ--QQLRDELYVQLCRQTTENPKRESLIRGWELMAICLSFVPPS 1172          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20316.5765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTX8_ECTSI2.090e-3952.27MyTH4 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S4A7X3_9STRA5.040e-2040.94Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3JVL0_9STRA2.940e-1638.89Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
W8ANT9_CERCA4.100e-1535.56Rho GTPase-activating protein 39 n=1 Tax=Ceratitis... [more]
A0A7F5RC37_AGRPL8.820e-1538.35rho GTPase-activating protein 39 n=1 Tax=Agrilus p... [more]
A0A811TWD6_CERCA9.460e-1535.56(Mediterranean fruit fly) hypothetical protein n=5... [more]
UPI001AE2CA971.700e-1436.84rho GTPase-activating protein 39-like n=1 Tax=Lepe... [more]
UPI001C9212421.720e-1435.88rho GTPase-activating protein 39-like isoform X1 n... [more]
UPI001ED890431.730e-1436.64uncharacterized protein LOC124172941 isoform X1 n=... [more]
A0A1B0BKM6_9MUSC1.750e-1436.30Uncharacterized protein n=5 Tax=Glossina TaxID=739... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20316contigH-elongata_contig20316:2029..2902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score80.5
Seed ortholog evalue6.5e-13
Seed eggNOG ortholog7213.XP_004535613.1
KEGG koko:K20649
GOsGO:0000902,GO:0000904,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006928,GO:0006935,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0008037,GO:0008038,GO:0008047,GO:0008150,GO:0009605,GO:0009653,GO:0009987,GO:0016043,GO:0016198,GO:0016199,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0030234,GO:0030695,GO:0031175,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0040011,GO:0042221,GO:0042330,GO:0043085,GO:0043087,GO:0043547,GO:0044093,GO:0044424,GO:0044464,GO:0048468,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050790,GO:0050896,GO:0051336,GO:0051345,GO:0060589,GO:0061564,GO:0065007,GO:0065009,GO:0071840,GO:0097485,GO:0098772,GO:0120036,GO:0120039
EggNOG free text desc.It is involved in the biological process described with signal transduction
EggNOG OGs28IV8@1,2QR6X@2759,38GGY@33154,3BCNK@33208,3D0I9@33213,3SJG6@50557,41V0Z@6656,44Y1H@7147
COG Functional cat.T
Best tax levelDiptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size396
Cds size396
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930142.2668114-CDS-H-elongata_contig20316:2028..23311622930142.2668114-CDS-H-elongata_contig20316:2028..2331Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20316 2029..2331 +
1691679297.2220888-CDS-H-elongata_contig20316:2028..23311691679297.2220888-CDS-H-elongata_contig20316:2028..2331Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20316 2029..2331 +
1622930142.281861-CDS-H-elongata_contig20316:2809..29021622930142.281861-CDS-H-elongata_contig20316:2809..2902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20316 2810..2902 +
1691679297.2377567-CDS-H-elongata_contig20316:2809..29021691679297.2377567-CDS-H-elongata_contig20316:2809..2902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20316 2810..2902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20316.5765.1prot_H-elongata_contig20316.5765.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20316 2029..2902 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20316.5765.1

>prot_H-elongata_contig20316.5765.1 ID=prot_H-elongata_contig20316.5765.1|Name=mRNA_H-elongata_contig20316.5765.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MALEPFARDHYNLTRKGIFGMTKRTPIKGLLSWKSQPIMTPLTTACKEDA
ELGVESLITFRIIMGYMGDRLAQDENIIILKGLQARLMKGSEEYIDEVFC
QVCKQTTLNPRVNSDIRGWRLLLSILAVVLPS
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mRNA from alignment at H-elongata_contig20316:2029..2902+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20316.5765.1 ID=mRNA_H-elongata_contig20316.5765.1|Name=mRNA_H-elongata_contig20316.5765.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=874bp|location=Sequence derived from alignment at H-elongata_contig20316:2029..2902+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCTCGAGCCATTCGCTCGTGACCACTACAATCTAACCCGTAAGGG CATTTTTGGTATGACGAAGAGAACGCCCATAAAGGGGCTTTTGTCCTGGA AAAGTCAGCCGATTATGACACCATTAACAACCGCATGTAAAGAGGATGCA GAACTAGGGGTCGAGAGCCTAATTACGTTTAGAATTATTATGGGATATAT GGGGGACAGGCTGGCCCAAGATGAAAACATTATAATCCTCAAGGGCCTCC AGGCACGTCTGATGAAAGGGAGTGAAGAGTACATTGACGAGGTTTTTTGT CAGGTATTTTTCAACTCCTTTACCCATTAGTAAAGTATTAAGAGAATCCT CTTGCGTCGCATCCTCATGCATTTTCCATAGCCACAAACACATGAATCAA AGAAAAAAACGCCCCTAAAAAAGAGCTCCGCAAAACGATGAGGTTGATTG CGAGGCGTTTCACTGTATGATGTATGAATTCTCTATTTACGAGCATCATG ATCTCAACCAAAGTAAACCATCCGGTGCGATGTCGATGATTTTTCGGTGG TGTTTGTTTTCATCATAACCCACGCTACGCAATGACTGTGAGAAGTCACG CTTTGGAGGCTCGAAGCTGAGACGTAATATCTTTATACAGGAGCAATGAG GGAACAACATTTACCAACCGTTTTCAGAGGACCAGTAAGGATCCCCGACG ATGACGTTTGGATACTTACTGACATGGTGAAGAAAGGACAACATACAAAC GCTCACAGTATTTTTGCGTATTTCCTCACAGGTGTGCAAGCAGACAACGT TGAACCCTCGCGTCAACAGCGATATACGAGGATGGCGGCTGTTGCTGTCA ATACTTGCAGTGGTCTTACCGAGC
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Coding sequence (CDS) from alignment at H-elongata_contig20316:2029..2902+

>mRNA_H-elongata_contig20316.5765.1 ID=mRNA_H-elongata_contig20316.5765.1|Name=mRNA_H-elongata_contig20316.5765.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig20316:2029..2902+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCTCGAGCCATTCGCTCGTGACCACTACAATCTAACCCGTAAGGG
CATTTTTGGTATGACGAAGAGAACGCCCATAAAGGGGCTTTTGTCCTGGA
AAAGTCAGCCGATTATGACACCATTAACAACCGCATGTAAAGAGGATGCA
GAACTAGGGGTCGAGAGCCTAATTACGTTTAGAATTATTATGGGATATAT
GGGGGACAGGCTGGCCCAAGATGAAAACATTATAATCCTCAAGGGCCTCC
AGGCACGTCTGATGAAAGGGAGTGAAGAGTACATTGACGAGGTTTTTTGT
CAGATGGCTCTCGAGCCATTCGCTCGTGACCACTACAATCTAACCCGTAA
GGGCATTTTTGGTATGACGAAGAGAACGCCCATAAAGGGGCTTTTGTCCT
GGAAAAGTCAGCCGATTATGACACCATTAACAACCGCATGTAAAGAGGAT
GCAGAACTAGGGGTCGAGAGCCTAATTACGTTTAGAATTATTATGGGATA
TATGGGGGACAGGCTGGCCCAAGATGAAAACATTATAATCCTCAAGGGCC
TCCAGGCACGTCTGATGAAAGGGAGTGAAGAGTACATTGACGAGGTTTTT
TGTCAGGTGTGCAAGCAGACAACGTTGAACCCTCGCGTCAACAGCGATAT
ACGAGGATGGCGGCTGTTGCTGTCAATACTTGCAGTGGTCTTACCGAGCG
TGTGCAAGCAGACAACGTTGAACCCTCGCGTCAACAGCGATATACGAGGA
TGGCGGCTGTTGCTGTCAATACTTGCAGTGGTCTTACCGAGC
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