mRNA_H-elongata_contig203.5759.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig203.5759.1 vs. uniprot
Match: UPI001175DB16 (zinc finger BED domain-containing protein 1-like n=1 Tax=Myripristis murdjan TaxID=586833 RepID=UPI001175DB16) HSP 1 Score: 61.2 bits (147), Expect = 1.320e-8 Identity = 43/114 (37.72%), Postives = 60/114 (52.63%), Query Frame = 1
Query: 1 RFIVKDLKPLSMVESVRFRDMHRAMLRNPNLQFPSRFTMT-----EWVGKKATDVKDLITNKINRKIVALTGDGWDSSNGGGSFYALTAHVMDPDSYELVRYTLACRKLSDRHT 327
RFIVKDL+P S+VE+ FRDM + + P PSR T E K +VK+ + N + VA+T D W S S+ +TAH + PD +EL + L R ++ HT
Sbjct: 107 RFIVKDLRPYSVVENEGFRDMIKTL--EPRYTIPSRQHFTDKCVPELYNKVKNEVKEQL---FNTERVAITTDAWTSC-ATDSYVTITAHHISPD-WELRSHVLQTRVFNESHT 213
BLAST of mRNA_H-elongata_contig203.5759.1 vs. uniprot
Match: A0A667WQ95_9TELE (BED-type domain-containing protein n=3 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667WQ95_9TELE) HSP 1 Score: 61.2 bits (147), Expect = 1.360e-8 Identity = 43/114 (37.72%), Postives = 60/114 (52.63%), Query Frame = 1
Query: 1 RFIVKDLKPLSMVESVRFRDMHRAMLRNPNLQFPSRFTMT-----EWVGKKATDVKDLITNKINRKIVALTGDGWDSSNGGGSFYALTAHVMDPDSYELVRYTLACRKLSDRHT 327
RFIVKDL+P S+VE+ FRDM + + P PSR T E K +VK+ + N + VA+T D W S S+ +TAH + PD +EL + L R ++ HT
Sbjct: 120 RFIVKDLRPYSVVENEGFRDMIKTL--EPRYTIPSRQHFTDKCVPELYNKVKNEVKEQL---FNTERVAITTDAWTSC-ATDSYVTITAHHISPD-WELRSHVLQTRVFNESHT 226
BLAST of mRNA_H-elongata_contig203.5759.1 vs. uniprot
Match: UPI00077D048B (zinc finger BED domain-containing protein 1-like n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=UPI00077D048B) HSP 1 Score: 60.1 bits (144), Expect = 3.290e-8 Identity = 38/113 (33.63%), Postives = 60/113 (53.10%), Query Frame = 1
Query: 1 RFIVKDLKPLSMVESVRFRDMHRAMLRNPNLQFPSRFTMTEWVGKKATDVKDLITNKINRKI--VALTGDGWDSSNGGGSFYALTAHVMDPDSYELVRYTLACRKLSDRHTAD 333
+ IVKD++PLS+VE F DM P + PSR+ T + K D + + I ++ V LT D W +S ++ + H +D D++E+V + L + L +RHTAD
Sbjct: 93 KLIVKDMRPLSLVEGDAFIDMVEYAC--PGFKCPSRWWFTNQLEKTYEDTLENLKKNIKKRSSKVTLTTDAW-TSIATEAYLGVPCHYID-DNWEMVSFVLCTKPLEERHTAD 201
BLAST of mRNA_H-elongata_contig203.5759.1 vs. uniprot
Match: UPI00201F5F91 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F5F91) HSP 1 Score: 59.7 bits (143), Expect = 4.710e-8 Identity = 37/113 (32.74%), Postives = 61/113 (53.98%), Query Frame = 1
Query: 1 RFIVKDLKPLSMVESVRFRDMHRAMLRNPNLQFPSRFTMTEWV-GKKATDVKDLITNKINR-KIVALTGDGWDSSNGGGSFYALTAHVMDPDSYELVRYTLACRKLSDRHTAD 333
RFI+K L+P S+V+S FRD+ + + +P + PSR T E + D K + K++ + VALT DGW S + H+ ++E++ + L R L++ HTA+
Sbjct: 68 RFIIKGLRPYSVVDSPEFRDLIQCL--DPRYKLPSRTTFAERIIPDMYKDAKQRVAEKLSEAEQVALTTDGWTSCATDSYLTITSCHLSV--NWEIINFVLQTRVLNESHTAE 176
BLAST of mRNA_H-elongata_contig203.5759.1 vs. uniprot
Match: UPI0011B56DFB (uncharacterized protein LOC115561311 n=2 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B56DFB) HSP 1 Score: 59.3 bits (142), Expect = 6.410e-8 Identity = 38/112 (33.93%), Postives = 57/112 (50.89%), Query Frame = 1
Query: 1 RFIVKDLKPLSMVESVRFRDMHRAMLRNPNLQFPSRFTMTEWVGKKATDVKDLITNKINR-KIVALTGDGWDSSNGGGSFYALTAHVMDPDSYELVRYTLACRKLSDRHTAD 333
RFIV+ L+P S+VE F+D+ + P SR T+ + + +K+ + N + +A T D W + SF +TAH +DP S+E LACR+L HT D
Sbjct: 46 RFIVQGLQPFSLVEKPSFQDLIVEL--QPRSAVMSRTTVRRKIDSATSKMKESLKNVMKEVPYIATTTDCWTARR--RSFIGVTAHWLDPCSFERRSAALACRQLRGSHTFD 153
BLAST of mRNA_H-elongata_contig203.5759.1 vs. uniprot
Match: UPI00084F5540 (uncharacterized protein LOC108765643 n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=UPI00084F5540) HSP 1 Score: 58.5 bits (140), Expect = 1.030e-7 Identity = 35/112 (31.25%), Postives = 66/112 (58.93%), Query Frame = 1
Query: 1 RFIVKDLKPLSMVESVRFRDMHRAMLRNPNLQFPSRFTMTEWVGKKATDVKDLITNKINR-KIVALTGDGWDSSNGGGSFYALTAHVMDPDSYELVRYTLACRKLSDRHTAD 333
+FI+++++PLS+V+S+ F ++ R L + ++ R T+ E + + +K+ + K+ +IVA T D W S G S+ +T H ++P++ E LACR++ +HT D
Sbjct: 60 QFIIENIQPLSIVDSLSFINLIRIGLPS-HINIMYRKTLKERLCQMYHRMKNALEKKLTEIEIVATTADLW--SKGKRSYLGMTVHWINPETLERESAALACRRIKGKHTYD 168
BLAST of mRNA_H-elongata_contig203.5759.1 vs. uniprot
Match: A0A8C2IAD6_CYPCA (Uncharacterized protein n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2IAD6_CYPCA) HSP 1 Score: 57.8 bits (138), Expect = 2.220e-7 Identity = 36/111 (32.43%), Postives = 58/111 (52.25%), Query Frame = 1
Query: 4 FIVKDLKPLSMVESVRFRDMHRAMLRNPNLQFPSRFTMTEWVGKKATDVKDLITNKINR-KIVALTGDGWDSSNGGGSFYALTAHVMDPDSYELVRYTLACRKLSDRHTAD 333
FIV+ L+P S+VE F+D+ + P+ S T+ + + +K+ + N++ + +A T D W + SF +TAH +DP S+E LACR+L HT D
Sbjct: 140 FIVQGLQPFSLVEKPSFQDLIVEL--QPSSAVMSHTTVRRKIDSDTSKMKERLKNEMKKVPYIATTTDCWTARR--RSFIGVTAHWLDPCSFERRSAALACRQLRGSHTFD 246
BLAST of mRNA_H-elongata_contig203.5759.1 vs. uniprot
Match: A0A8C1F658_CYPCA (Uncharacterized protein n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1F658_CYPCA) HSP 1 Score: 57.8 bits (138), Expect = 2.230e-7 Identity = 36/111 (32.43%), Postives = 58/111 (52.25%), Query Frame = 1
Query: 4 FIVKDLKPLSMVESVRFRDMHRAMLRNPNLQFPSRFTMTEWVGKKATDVKDLITNKINR-KIVALTGDGWDSSNGGGSFYALTAHVMDPDSYELVRYTLACRKLSDRHTAD 333
FIV+ L+P S+VE F+D+ + P+ S T+ + + +K+ + N++ + +A T D W + SF +TAH +DP S+E LACR+L HT D
Sbjct: 115 FIVQGLQPFSLVEKPSFQDLIVEL--QPSSAVMSHTTVRRKIDSDTSKMKERLKNEMKKVPYIATTTDCWTARR--RSFIGVTAHWLDPCSFERRSAALACRQLRGSHTFD 221
BLAST of mRNA_H-elongata_contig203.5759.1 vs. uniprot
Match: UPI001054C0BF (zinc finger BED domain-containing protein 4-like n=1 Tax=Gouania willdenowi TaxID=441366 RepID=UPI001054C0BF) HSP 1 Score: 56.6 bits (135), Expect = 3.970e-7 Identity = 37/110 (33.64%), Postives = 57/110 (51.82%), Query Frame = 1
Query: 7 IVKDLKPLSMVESVRFRDMHRAMLRNPNLQFPSRFTMTEWVGKKATDVKDLITNKINR--KIVALTGDGWDSSNGGGSFYALTAHVMDPDSYELVRYTLACRKLSDRHTA 330
+VKD++PLSMVE F+ M ++ NP PSR + KK D + ++I+ VALT D W +S G + +T H + D +++ L+ L +RHTA
Sbjct: 44 LVKDMRPLSMVEGAGFQQMLKSF--NPGYTIPSRMHFARLLDKKYNATVDQVKSRISAIDSKVALTADIW-TSVATGRYMGITCHYIGID-WQMESICLSTMPLEERHTA 149
BLAST of mRNA_H-elongata_contig203.5759.1 vs. uniprot
Match: A0A6P8TVQ2_GYMAC (zinc finger BED domain-containing protein 1-like n=2 Tax=Notothenioidei TaxID=8205 RepID=A0A6P8TVQ2_GYMAC) HSP 1 Score: 57.0 bits (136), Expect = 4.150e-7 Identity = 36/111 (32.43%), Postives = 60/111 (54.05%), Query Frame = 1
Query: 7 IVKDLKPLSMVESVRFRDMHRAMLRNPNLQFPSRFTMTEWVGKKATDVKDLITNKINRKI--VALTGDGWDSSNGGGSFYALTAHVMDPDSYELVRYTLACRKLSDRHTAD 333
IVKD++PLS+VES F DM P + PSR+ T+ + K D + + ++ + LT D W +S ++ +T H ++ +++E+V + L + L DRHT D
Sbjct: 90 IVKDMRPLSLVESEAFIDMIEYAC--PGFKCPSRWWFTKQLEKAYQCALDDLKGNLKKRSSKITLTTDAW-TSIATEAYLGVTCHYIN-ENWEMVSFVLCTKPLEDRHTGD 196 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig203.5759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig203.5759.1 >prot_H-elongata_contig203.5759.1 ID=prot_H-elongata_contig203.5759.1|Name=mRNA_H-elongata_contig203.5759.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp RFIVKDLKPLSMVESVRFRDMHRAMLRNPNLQFPSRFTMTEWVGKKATDVback to top mRNA from alignment at H-elongata_contig203:11169..11507- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig203.5759.1 ID=mRNA_H-elongata_contig203.5759.1|Name=mRNA_H-elongata_contig203.5759.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=339bp|location=Sequence derived from alignment at H-elongata_contig203:11169..11507- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig203:11169..11507- >mRNA_H-elongata_contig203.5759.1 ID=mRNA_H-elongata_contig203.5759.1|Name=mRNA_H-elongata_contig203.5759.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig203:11169..11507- (Himanthalia elongata Himel1 dioecious)back to top |