mRNA_H-elongata_contig106980.576.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig106980.576.1 vs. uniprot
Match: A0A6H5KGH1_9PHAE (SSD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGH1_9PHAE) HSP 1 Score: 112 bits (279), Expect = 3.430e-27 Identity = 59/66 (89.39%), Postives = 65/66 (98.48%), Query Frame = 1
Query: 1 KALSDIGVAVIHGGVSTFLAVVLLSLSSSYVFRVLFKQFFSTAVMGLAHGLILLPILLSLIGPSSY 198
+AL+DIGVAVIHGGVSTFLAVVLLSLS+SYVFRVLFKQFF+TAVMGL HGLILLP+LLSL+GPSSY
Sbjct: 810 QALADIGVAVIHGGVSTFLAVVLLSLSASYVFRVLFKQFFATAVMGLGHGLILLPVLLSLVGPSSY 875
BLAST of mRNA_H-elongata_contig106980.576.1 vs. uniprot
Match: A0A7S2SME8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SME8_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 3.230e-19 Identity = 44/64 (68.75%), Postives = 56/64 (87.50%), Query Frame = 1
Query: 7 LSDIGVAVIHGGVSTFLAVVLLSLSSSYVFRVLFKQFFSTAVMGLAHGLILLPILLSLIGPSSY 198
LSD+G AV++GG+STF AV+LLS S+SYVFRVLF+QFF T V+GL HG+ILLP+LLS +GP +Y
Sbjct: 634 LSDVGAAVLNGGLSTFFAVILLSASASYVFRVLFQQFFLTVVLGLGHGMILLPVLLSFLGPPAY 697
BLAST of mRNA_H-elongata_contig106980.576.1 vs. uniprot
Match: A0A7S2Y3B3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3B3_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 2.210e-18 Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1
Query: 1 KALSDIGVAVIHGGVSTFLAVVLLSLSSSYVFRVLFKQFFSTAVMGLAHGLILLPILLSLIGPSSY 198
KAL DIG AV++GG+STFLAVVLL S SYVF FK FF+T V+GL HG++LLP+LLSL+GP+ Y
Sbjct: 344 KALGDIGTAVLNGGLSTFLAVVLLGRSKSYVFITTFKLFFATVVLGLGHGMVLLPVLLSLVGPNPY 409
BLAST of mRNA_H-elongata_contig106980.576.1 vs. uniprot
Match: A0A7S1XPY4_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPY4_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 3.930e-18 Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 1
Query: 4 ALSDIGVAVIHGGVSTFLAVVLLSLSSSYVFRVLFKQFFSTAVMGLAHGLILLPILLSLIGPSSY 198
ALSDIG AV++G +STFLAVVLLS S SYVFRVLFKQFF T V+G+ HG+I LP++L +GP Y
Sbjct: 835 ALSDIGAAVLNGAISTFLAVVLLSQSDSYVFRVLFKQFFVTCVLGVGHGMIFLPVMLYFLGPKPY 899
BLAST of mRNA_H-elongata_contig106980.576.1 vs. uniprot
Match: A0A7S2G6F6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G6F6_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 1.370e-17 Identity = 43/65 (66.15%), Postives = 55/65 (84.62%), Query Frame = 1
Query: 4 ALSDIGVAVIHGGVSTFLAVVLLSLSSSYVFRVLFKQFFSTAVMGLAHGLILLPILLSLIGPSSY 198
AL+D+G AV++GG+STFLAV LL+ S+SYVF VLFKQFF T ++GL HGLILLP+LL+ +GP Y
Sbjct: 787 ALADVGAAVLNGGISTFLAVSLLAGSASYVFVVLFKQFFLTVILGLVHGLILLPVLLAYVGPPCY 851
BLAST of mRNA_H-elongata_contig106980.576.1 vs. uniprot
Match: UPI00142593C3 (patched domain-containing protein 3-like isoform X1 n=3 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142593C3) HSP 1 Score: 80.9 bits (198), Expect = 3.090e-16 Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 1
Query: 1 KALSDIGVAVIHGGVSTFLAVVLLSLSSSYVFRVLFKQFFSTAVMGLAHGLILLPILLSLIGPSSY 198
KA++DIG AV +GG ST LA VLLSLSSSY+FR FK FF + GL HGL+LLP+LLS IGP+ Y
Sbjct: 776 KAITDIGPAVFNGGFSTLLAFVLLSLSSSYIFRTFFKIFFLVVLFGLFHGLVLLPVLLSWIGPAPY 841
BLAST of mRNA_H-elongata_contig106980.576.1 vs. uniprot
Match: A0A7S2DHD6_9EUKA (Hypothetical protein n=2 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DHD6_9EUKA) HSP 1 Score: 80.9 bits (198), Expect = 3.100e-16 Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 1
Query: 1 KALSDIGVAVIHGGVSTFLAVVLLSLSSSYVFRVLFKQFFSTAVMGLAHGLILLPILLSLIGPS 192
KAL ++G V+HG STFLAV++LS+S SY+FRV FK FF V G+ HGL+LLP+LLSLIGP+
Sbjct: 939 KALEEMGTPVLHGAFSTFLAVLVLSVSKSYIFRVFFKMFFGICVFGVLHGLVLLPVLLSLIGPA 1002
BLAST of mRNA_H-elongata_contig106980.576.1 vs. uniprot
Match: A0A813INV5_POLGL (Hypothetical protein n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813INV5_POLGL) HSP 1 Score: 79.3 bits (194), Expect = 1.070e-15 Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 1
Query: 7 LSDIGVAVIHGGVSTFLAVVLLSLSSSYVFRVLFKQFFSTAVMGLAHGLILLPILLSLIGPSSY 198
L D+G AV+ GG STFLAV LL S SYVFRVLF+ FF T V+GL+HGL+++P +LSL+GP Y
Sbjct: 832 LGDVGSAVMKGGASTFLAVCLLGASKSYVFRVLFQTFFLTVVLGLSHGLLVMPAILSLVGPEGY 895
BLAST of mRNA_H-elongata_contig106980.576.1 vs. uniprot
Match: A0A813M0I9_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813M0I9_POLGL) HSP 1 Score: 79.0 bits (193), Expect = 1.490e-15 Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 1
Query: 7 LSDIGVAVIHGGVSTFLAVVLLSLSSSYVFRVLFKQFFSTAVMGLAHGLILLPILLSLIGPSSY 198
L D+G AV+ GG STFLAV LL S SYVFRVLF+ FF T ++GL+HGL+++P +LSL+GP Y
Sbjct: 3588 LGDVGSAVMKGGASTFLAVCLLGASKSYVFRVLFQTFFLTVILGLSHGLLVMPAILSLVGPEGY 3651
BLAST of mRNA_H-elongata_contig106980.576.1 vs. uniprot
Match: A0A7S4MYT4_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MYT4_9EUKA) HSP 1 Score: 77.8 bits (190), Expect = 1.560e-15 Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 1
Query: 4 ALSDIGVAVIHGGVSTFLAVVLLSLSSSYVFRVLFKQFFSTAVMGLAHGLILLPILLSLIGPSS 195
AL ++G AV+HG +STF AV++LS S SY+FRV FKQFF + G AHGL LP++LSLIGP
Sbjct: 158 ALGEMGTAVVHGALSTFAAVLVLSTSKSYIFRVFFKQFFGICIFGAAHGLCFLPVMLSLIGPDQ 221 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106980.576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig106980.576.1 >prot_H-elongata_contig106980.576.1 ID=prot_H-elongata_contig106980.576.1|Name=mRNA_H-elongata_contig106980.576.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp KALSDIGVAVIHGGVSTFLAVVLLSLSSSYVFRVLFKQFFSTAVMGLAHGback to top mRNA from alignment at H-elongata_contig106980:1367..2222+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig106980.576.1 ID=mRNA_H-elongata_contig106980.576.1|Name=mRNA_H-elongata_contig106980.576.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=856bp|location=Sequence derived from alignment at H-elongata_contig106980:1367..2222+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig106980:1367..2222+ >mRNA_H-elongata_contig106980.576.1 ID=mRNA_H-elongata_contig106980.576.1|Name=mRNA_H-elongata_contig106980.576.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig106980:1367..2222+ (Himanthalia elongata Himel1 dioecious)back to top |