mRNA_H-elongata_contig2025.5737.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig2025.5737.1
Unique NamemRNA_H-elongata_contig2025.5737.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig2025.5737.1 vs. uniprot
Match: A0A6H5JBJ7_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ7_9PHAE)

HSP 1 Score: 329 bits (843), Expect = 3.430e-111
Identity = 160/252 (63.49%), Postives = 191/252 (75.79%), Query Frame = 1
Query:    1 MSFGVQDNSWCDAREWTLWISESWRIRPNIGSIITQRPSILVLDDFKCHRDEAFITDLWKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLVRGKYTAYTATAVADSTTGKLKPPGRGMVSTWCKEAWAAITSDVIKTCFKICGLTRALDGSEDHAWCMHNFGEGYHKLPQKQRVAWEEAHPGVSLPPLQLPEIPNGEPIGTNPITAAEKEVQGRLLPPTGGNESNSDVELLEYDSDLECLGLSGGGEKKGE 756
            MSFGVQ+ SW D RE   WIS SW++RPN GSII QR  ILVLDDFKCH+ E FI  L +  NT VI IPGG TPLLQPLDRMLNKQMKRL+RGKYTAY+A+AVAD+ +GKLKPP RG+VSTWCK+AW +IT + +KTCFKICGLT ALDGSEDHAWC HNFGE Y  L ++Q   W   HP V+LPPL+LP++P G    +NPITAA+KEV+G+LLP    +ES+S+VE+ E           GGG+ +GE
Sbjct:    1 MSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIIQQRLCILVLDDFKCHKGEGFIAPLKRDANTIVIFIPGGWTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKKAWESITPETVKTCFKICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQHAVWLAEHPDVTLPPLKLPKVPGG--FDSNPITAAQKEVEGKLLPYVA-DESDSEVEVSEXXXXXXXXXXQGGGDAEGE 249          
BLAST of mRNA_H-elongata_contig2025.5737.1 vs. uniprot
Match: A0A6H5KQK9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK9_9PHAE)

HSP 1 Score: 325 bits (833), Expect = 2.990e-108
Identity = 158/251 (62.95%), Postives = 190/251 (75.70%), Query Frame = 1
Query:    1 MSFGVQDNSWCDAREWTLWISESWRIRPNIGSIITQRPSILVLDDFKCHRDEAFITDLWKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLVRGKYTAYTATAVADSTTGKLKPPGRGMVSTWCKEAWAAITSDVIKTCFKICGLTRALDGSEDHAWCMHNFGEGYHKLPQKQRVAWEEAHPGVSLPPLQLPEIPNGEPIGTNPITAAEKEVQGRLLPPTGGNESNSDVELLEYDSDLECLGLSGGGEKKG 753
            MSFGVQ+ SW D RE   WIS SW++RPN GSI+ QRP ILVLDD KCH+ E FI  L +  NT VI IPGGLTPLLQPLDRMLNKQMKRL+RGKYTAY+ +AVAD+ +GKLKPP RG+VSTWCKEAW +IT + +K+CFKICGLT ALDGSEDHAWC H+FGE  H L ++Q   W   HP V+LPPL+LP++P G    +NPITAA+KEV+G+LLP    +ES+S+VE+LE           GGG  +G
Sbjct:   98 MSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDVKCHKYEGFIAALKRDANTMVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSTSAVADARSGKLKPPERGVVSTWCKEAWESITPETVKSCFKICGLTLALDGSEDHAWCDHDFGEDSHDLLEEQHAVWLAEHPDVTLPPLKLPKVPGG--FDSNPITAAQKEVEGKLLPYVA-DESDSEVEVLEGXXXXXXXXXQGGGGAEG 345          
BLAST of mRNA_H-elongata_contig2025.5737.1 vs. uniprot
Match: A0A6H5L8W0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8W0_9PHAE)

HSP 1 Score: 322 bits (824), Expect = 7.410e-108
Identity = 157/252 (62.30%), Postives = 188/252 (74.60%), Query Frame = 1
Query:    1 MSFGVQDNSWCDAREWTLWISESWRIRPNIGSIITQRPSILVLDDFKCHRDEAFITDLWKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLVRGKYTAYTATAVADSTTGKLKPPGRGMVSTWCKEAWAAITSDVIKTCFKICGLTRALDGSEDHAWCMHNFGEGYHKLPQKQRVAWEEAHPGVSLPPLQLPEIPNGEPIGTNPITAAEKEVQGRLLPPTGGNESNSDVELLEYDSDLECLGLSGGGEKKGE 756
            MSFGVQ+ SW D RE   WIS SW+ RPN GSI+ QRP ILVLDDFKC +DE FI  L +  NT  I IPGGLTPLLQPLDR+LNKQMKR++RGKYTAY+A+AVAD+ +GKLKPP RG+VSTWC EAW +I  + +KTCFKICGLT ALDG EDHAW  HNFGE Y  L ++Q   W   HP  +LPPL+LPE+P G     NPIT A+KEV+ +L+P    +ES S+VE+LE DSD+E +   GGG  +GE
Sbjct:    1 MSFGVQEKSWSDQRECNGWISGSWKFRPNNGSIVQQRPCILVLDDFKCRKDEGFIAALKRDANTIAIFIPGGLTPLLQPLDRVLNKQMKRMLRGKYTAYSASAVADARSGKLKPPERGVVSTWCTEAWESIIPETVKTCFKICGLTLALDGREDHAWREHNFGEDYRDLLEEQHAVWLAEHPDATLPPLKLPEVPGG--FDFNPITGAQKEVEEKLMPYVA-DESASEVEVLEGDSDVEVVEGQGGGGAEGE 249          
BLAST of mRNA_H-elongata_contig2025.5737.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 327 bits (837), Expect = 3.180e-107
Identity = 160/252 (63.49%), Postives = 190/252 (75.40%), Query Frame = 1
Query:    1 MSFGVQDNSWCDAREWTLWISESWRIRPNIGSIITQRPSILVLDDFKCHRDEAFITDLWKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLVRGKYTAYTATAVADSTTGKLKPPGRGMVSTWCKEAWAAITSDVIKTCFKICGLTRALDGSEDHAWCMHNFGEGYHKLPQKQRVAWEEAHPGVSLPPLQLPEIPNGEPIGTNPITAAEKEVQGRLLPPTGGNESNSDVELLEYDSDLECLGLSGGGEKKGE 756
            MSFGVQ+ SW D RE   WIS SW++RPN GSI+ QRP ILVLDDFKCH+DE FI  L +  NT VI IPG LTPLLQPLDRMLNKQMKRL+R KYTAY+A+AVAD+ +GKLKPP RG+VSTWCKEAW + T + +KTCF ICGLT ALDGSEDHAWC HNFGE Y  L ++QR  W   H  V+LPPL+LP++P G    +NPITAA+KEV+G+LLP    +ES+S+VE+LE           GGG  +GE
Sbjct:  217 MSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESSTPETVKTCFMICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQRAVWLAEHADVTLPPLKLPKVPGG--FDSNPITAAQKEVEGKLLPYVA-DESDSEVEVLEGXXXXXXXXXQGGGGAEGE 465          
BLAST of mRNA_H-elongata_contig2025.5737.1 vs. uniprot
Match: A0A6H5J8R4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R4_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 8.800e-103
Identity = 146/218 (66.97%), Postives = 173/218 (79.36%), Query Frame = 1
Query:    1 MSFGVQDNSWCDAREWTLWISESWRIRPNIGSIITQRPSILVLDDFKCHRDEAFITDLWKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLVRGKYTAYTATAVADSTTGKLKPPGRGMVSTWCKEAWAAITSDVIKTCFKICGLTRALDGSEDHAWCMHNFGEGYHKLPQKQRVAWEEAHPGVSLPPLQLPEIPNGEPIGTNPITAAEKEVQGRLLP 654
            MSFGVQ+ SW D RE   W S SW++RPN GSI+ QRP ILVLDDFKCH+DE FI  L +  NT VI IPGGLTPLLQPLD  LNKQMKRL+RGK+TAY+++AVAD+ +GKLKPP RG+VSTWCKE W +IT + +KTCFKICGLT ALDGSEDHAWC HNFGE Y  L ++Q   W   HP V+LPPL+LP++P G    +NPITAA+KEV+G+LLP
Sbjct:   62 MSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLD--LNKQMKRLLRGKHTAYSSSAVADARSGKLKPPERGIVSTWCKEEWESITPETVKTCFKICGLTLALDGSEDHAWCAHNFGEDYRDLLEEQHAVWLAEHPNVTLPPLKLPKVPGG--FDSNPITAAQKEVEGKLLP 275          
BLAST of mRNA_H-elongata_contig2025.5737.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 317 bits (812), Expect = 3.900e-102
Identity = 148/230 (64.35%), Postives = 179/230 (77.83%), Query Frame = 1
Query:    1 MSFGVQDNSWCDAREWTLWISESWRIRPNIGSIITQRPSILVLDDFKCHRDEAFITDLWKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLVRGKYTAYTATAVADSTTGKLKPPGRGMVSTWCKEAWAAITSDVIKTCFKICGLTRALDGSEDHAWCMHNFGEGYHKLPQKQRVAWEEAHPGVSLPPLQLPEIPNGEPIGTNPITAAEKEVQGRLLPPTGGNESNSDVE 690
            MSFGVQ+ SWCD RE+ LWI +SW++RPN GS++ QR  ILVLDDFKCH+D+ FI  L +  NT VI IPGGLTPLLQPLDRMLNKQMKRL+RG YTA+TA A  D  TGKL PPGRG V+TWCK AWA+IT + +KTCFKICGLT ALDGSEDHAWC+HNFG+GY +L ++QRV W   HP V+LPPLQLP++P       N I AA KE++  LLP   G++S+ ++E
Sbjct:  330 MSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPAES--TANHIEAAAKELEAGLLP--RGDDSDIEIE 555          
BLAST of mRNA_H-elongata_contig2025.5737.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 314 bits (805), Expect = 5.290e-101
Identity = 149/230 (64.78%), Postives = 177/230 (76.96%), Query Frame = 1
Query:    1 MSFGVQDNSWCDAREWTLWISESWRIRPNIGSIITQRPSILVLDDFKCHRDEAFITDLWKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLVRGKYTAYTATAVADSTTGKLKPPGRGMVSTWCKEAWAAITSDVIKTCFKICGLTRALDGSEDHAWCMHNFGEGYHKLPQKQRVAWEEAHPGVSLPPLQLPEIPNGEPIGTNPITAAEKEVQGRLLPPTGGNESNSDVE 690
            MSFGVQ+ SWCD RE  LWI +SW++RPN GSI+ QR  ILVLDDFKCH+D+ FI  L +  NT VI IPGGLTPLLQPLDRMLNKQMKRL+RG YTA+TA A  D  TGKL PPGRG V+TWCK AWA+IT +  KTCFKICGLT ALDGSEDHAWC+HNFG+GY +L ++QRV W   HP V+LPPLQLP++P       N I AA KE++  LLP   G++S+ ++E
Sbjct:  337 MSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGRGAVATWCKNAWASITPETAKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPAES--TANHIEAAAKELEAGLLP--RGDDSDIEIE 562          
BLAST of mRNA_H-elongata_contig2025.5737.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 2.780e-98
Identity = 156/285 (54.74%), Postives = 186/285 (65.26%), Query Frame = 1
Query:    1 MSFGVQDNSWCDAREWTLWISESWRIRPNIGSIITQRPSILVLDDFKCHRDEAFITDLWKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLVRGKYTAYTATAVADSTTGKLKPPGRGMVSTWCKEAWAAITSDVIKTCFKICGLTRALDGSEDHAWCMHNFGEGYHKLPQKQRVAWEEAHPGVSLPPLQLPEIPNGEP---------------------------------IGTNPITAAEKEVQGRLLPPTGGNESNSDVELLEYDSDLECLGLSGGGEKKGE 756
            MSFGVQ+ SW D RE   W S SW++RPN GSI+ QRP ILVLDDFKCH+DE FI  L +  NT VI IPGGLTPLLQPLDRMLNKQ KRL+R KYTAY+A+A  D+ +GKLKPP RG+VSTWCK AW +IT + +KTCFKICGLT ALDGSEDHAWC HNFGE Y  L ++Q   W   HP V+LPPL+LP++P                                       +NPI AA+KEV+G+LLP    +ES+S+VE+LE           GGG  +GE
Sbjct:  151 MSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAYSASAT-DARSGKLKPPERGVVSTWCKGAWESITPETVKTCFKICGLTLALDGSEDHAWCAHNFGEDYRDLLEEQHAVWLAEHPNVTLPPLKLPKVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFDSNPIMAAQKEVEGKLLPYVP-DESDSEVEVLEGXXXXXXXXXQGGGGAEGE 433          
BLAST of mRNA_H-elongata_contig2025.5737.1 vs. uniprot
Match: A0A6H5KYG9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYG9_9PHAE)

HSP 1 Score: 304 bits (778), Expect = 1.290e-96
Identity = 145/227 (63.88%), Postives = 172/227 (75.77%), Query Frame = 1
Query:   10 GVQDNSWCDAREWTLWISESWRIRPNIGSIITQRPSILVLDDFKCHRDEAFITDLWKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLVRGKYTAYTATAVADSTTGKLKPPGRGMVSTWCKEAWAAITSDVIKTCFKICGLTRALDGSEDHAWCMHNFGEGYHKLPQKQRVAWEEAHPGVSLPPLQLPEIPNGEPIGTNPITAAEKEVQGRLLPPTGGNESNSDVE 690
            GVQ+ SWCD RE  LWI +SW++RPN GSI+ QR  ILVLDDFKCH+D+ FI  L K  NT VI IPGGLTPLLQPLDRMLNKQMKRL+RG YTA TA A  D  TG L PPGRG V+TWCK AWA+IT + +KTCFKICGLT ALDGSEDHAWC+HNFG+GY +L ++QRV W   HP V+LP LQLP++P       N I AA KE++  LLP   G++S+ ++E
Sbjct:  370 GVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALNKEANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTANTAKAARDPKTGNLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPTLQLPKVPAES--TANHIEAAAKELEAGLLP--CGDDSDIEIE 592          
BLAST of mRNA_H-elongata_contig2025.5737.1 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 1.800e-95
Identity = 151/246 (61.38%), Postives = 181/246 (73.58%), Query Frame = 1
Query:   19 DNSWCDAREWTLWISESWRIRPNIGSIITQRPSILVLDDFKCHRDEAFITDLWKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLVRGKYTAYTATAVADSTTGKLKPPGRGMVSTWCKEAWAAITSDVIKTCFKICGLTRALDGSEDHAWCMHNFGEGYHKLPQKQRVAWEEAHPGVSLPPLQLPEIPNGEPIGTNPITAAEKEVQGRLLPPTGGNESNSDVELLEYDSDLECLGLSGGGEKKGE 756
            + SW D RE   WI  SW++RPN GSI+ QRP ILVLDDFKCH+DE FI  L KR   +VI IPGGLT LLQPLDRMLNKQMKRL+RGKYTA +A+AVAD+ +GKL PP  G+VSTWCKEAW +ITS  ++TCFKICGLT ALDGSE HAWC HNFGE Y  L ++Q   W   HP  +LPPL+LP++P G    +NPITAA+KEV+G+LLP    +ES+S+VE+LE           GGG  +GE
Sbjct:  418 EKSWSDQRECNGWIPGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAAL-KRGAKTVIFIPGGLTSLLQPLDRMLNKQMKRLLRGKYTACSASAVADARSGKLNPPEHGVVSTWCKEAWESITSKTVETCFKICGLTLALDGSEHHAWCEHNFGEDYGDLLEEQHAVWLAEHPDDTLPPLKLPKVPGG--FDSNPITAAQKEVEGKLLPYVA-DESDSEVEVLEGXXXXXXXXXQGGGGAEGE 659          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig2025.5737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBJ7_9PHAE3.430e-11163.49DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5KQK9_9PHAE2.990e-10862.95DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L8W0_9PHAE7.410e-10862.30DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE3.180e-10763.49DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J8R4_9PHAE8.800e-10366.97DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE3.900e-10264.35DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ1_9PHAE5.290e-10164.78DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE2.780e-9854.74DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KYG9_9PHAE1.290e-9663.88DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ8_9PHAE1.800e-9561.38DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig2025contigH-elongata_contig2025:12874..13632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.1
Seed ortholog evalue1.1e-35
Seed eggNOG ortholog2880.D7FXD3
Preferred namePOGK
KEGG koko:K09228
EggNOG free text desc.DNA binding
EggNOG OGsKOG3105@1,KOG3105@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons1
Model size759
Cds size759
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930138.9730642-CDS-H-elongata_contig2025:12873..136321622930138.9730642-CDS-H-elongata_contig2025:12873..13632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2025 12874..13632 -
1691679295.8772686-CDS-H-elongata_contig2025:12873..136321691679295.8772686-CDS-H-elongata_contig2025:12873..13632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2025 12874..13632 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig2025.5737.1prot_H-elongata_contig2025.5737.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig2025 12874..13632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig2025.5737.1

>prot_H-elongata_contig2025.5737.1 ID=prot_H-elongata_contig2025.5737.1|Name=mRNA_H-elongata_contig2025.5737.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=253bp
MSFGVQDNSWCDAREWTLWISESWRIRPNIGSIITQRPSILVLDDFKCHR
DEAFITDLWKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLVRGKYTAYT
ATAVADSTTGKLKPPGRGMVSTWCKEAWAAITSDVIKTCFKICGLTRALD
GSEDHAWCMHNFGEGYHKLPQKQRVAWEEAHPGVSLPPLQLPEIPNGEPI
GTNPITAAEKEVQGRLLPPTGGNESNSDVELLEYDSDLECLGLSGGGEKK
GE*
back to top

mRNA from alignment at H-elongata_contig2025:12874..13632-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig2025.5737.1 ID=mRNA_H-elongata_contig2025.5737.1|Name=mRNA_H-elongata_contig2025.5737.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=759bp|location=Sequence derived from alignment at H-elongata_contig2025:12874..13632- (Himanthalia elongata Himel1 dioecious)
ATGTCGTTTGGTGTGCAGGATAATAGCTGGTGTGACGCGCGGGAGTGGAC CCTTTGGATCTCGGAGAGCTGGAGGATTCGCCCCAACATCGGAAGCATCA TCACGCAGCGCCCGAGCATCCTGGTATTGGACGACTTCAAGTGCCACCGT GACGAGGCCTTCATTACTGACCTCTGGAAGAGGTGCAACACCAGCGTCAT CCTGATCCCGGGCGGGTTGACTCCTCTCCTCCAGCCGCTGGACCGCATGC TCAACAAGCAGATGAAGCGGCTAGTGCGGGGGAAGTACACCGCCTACACC GCCACAGCGGTTGCCGACTCAACTACGGGCAAGCTGAAGCCGCCGGGCCG TGGGATGGTGTCCACGTGGTGCAAGGAAGCGTGGGCAGCCATCACCTCCG ACGTGATCAAGACTTGCTTCAAAATCTGCGGTCTTACCCGTGCGCTTGAC GGCAGCGAGGACCACGCCTGGTGCATGCACAACTTCGGTGAGGGTTACCA CAAGTTGCCCCAGAAGCAGCGCGTTGCGTGGGAGGAAGCACACCCCGGCG TTTCGCTGCCCCCACTCCAGCTACCAGAGATACCCAACGGTGAACCGATC GGCACCAACCCCATCACGGCTGCAGAGAAGGAGGTTCAAGGACGTCTGCT ACCTCCTACCGGTGGGAATGAAAGCAACAGCGATGTGGAGCTGCTGGAAT ATGACAGCGATCTAGAATGTTTGGGCTTGTCGGGGGGTGGGGAGAAGAAA GGAGAGTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig2025:12874..13632-

>mRNA_H-elongata_contig2025.5737.1 ID=mRNA_H-elongata_contig2025.5737.1|Name=mRNA_H-elongata_contig2025.5737.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1518bp|location=Sequence derived from alignment at H-elongata_contig2025:12874..13632- (Himanthalia elongata Himel1 dioecious)
ATGTCGTTTGGTGTGCAGGATAATAGCTGGTGTGACGCGCGGGAGTGGAC
CCTTTGGATCTCGGAGAGCTGGAGGATTCGCCCCAACATCGGAAGCATCA
TCACGCAGCGCCCGAGCATCCTGGTATTGGACGACTTCAAGTGCCACCGT
GACGAGGCCTTCATTACTGACCTCTGGAAGAGGTGCAACACCAGCGTCAT
CCTGATCCCGGGCGGGTTGACTCCTCTCCTCCAGCCGCTGGACCGCATGC
TCAACAAGCAGATGAAGCGGCTAGTGCGGGGGAAGTACACCGCCTACACC
GCCACAGCGGTTGCCGACTCAACTACGGGCAAGCTGAAGCCGCCGGGCCG
TGGGATGGTGTCCACGTGGTGCAAGGAAGCGTGGGCAGCCATCACCTCCG
ACGTGATCAAGACTTGCTTCAAAATCTGCGGTCTTACCCGTGCGCTTGAC
GGCAGCGAGGACCACGCCTGGTGCATGCACAACTTCGGTGAGGGTTACCA
CAAGTTGCCCCAGAAGCAGCGCGTTGCGTGGGAGGAAGCACACCCCGGCG
TTTCGCTGCCCCCACTCCAGCTACCAGAGATACCCAACGGTGAACCGATC
GGCACCAACCCCATCACGGCTGCAGAGAAGGAGGTTCAAGGACGTCTGCT
ACCTCCTACCGGTGGGAATGAAAGCAACAGCGATGTGGAGCTGCTGGAAT
ATGACAGCGATCTAGAATGTTTGGGCTTGTCGGGGGGTGGGGAGAAGAAA
GGAGAGTAGATGTCGTTTGGTGTGCAGGATAATAGCTGGTGTGACGCGCG
GGAGTGGACCCTTTGGATCTCGGAGAGCTGGAGGATTCGCCCCAACATCG
GAAGCATCATCACGCAGCGCCCGAGCATCCTGGTATTGGACGACTTCAAG
TGCCACCGTGACGAGGCCTTCATTACTGACCTCTGGAAGAGGTGCAACAC
CAGCGTCATCCTGATCCCGGGCGGGTTGACTCCTCTCCTCCAGCCGCTGG
ACCGCATGCTCAACAAGCAGATGAAGCGGCTAGTGCGGGGGAAGTACACC
GCCTACACCGCCACAGCGGTTGCCGACTCAACTACGGGCAAGCTGAAGCC
GCCGGGCCGTGGGATGGTGTCCACGTGGTGCAAGGAAGCGTGGGCAGCCA
TCACCTCCGACGTGATCAAGACTTGCTTCAAAATCTGCGGTCTTACCCGT
GCGCTTGACGGCAGCGAGGACCACGCCTGGTGCATGCACAACTTCGGTGA
GGGTTACCACAAGTTGCCCCAGAAGCAGCGCGTTGCGTGGGAGGAAGCAC
ACCCCGGCGTTTCGCTGCCCCCACTCCAGCTACCAGAGATACCCAACGGT
GAACCGATCGGCACCAACCCCATCACGGCTGCAGAGAAGGAGGTTCAAGG
ACGTCTGCTACCTCCTACCGGTGGGAATGAAAGCAACAGCGATGTGGAGC
TGCTGGAATATGACAGCGATCTAGAATGTTTGGGCTTGTCGGGGGGTGGG
GAGAAGAAAGGAGAGTAG
back to top