mRNA_H-elongata_contig202087.5718.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig202087.5718.1
Unique NamemRNA_H-elongata_contig202087.5718.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig202087.5718.1 vs. uniprot
Match: D7FKD4_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD4_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.790e-15
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 MQTLLSSRLMPVREHLLQLRRRYHIRADEVKAAKAAIERETMADDGAILERLRSAESLKQV 183
            +Q+L SSRLMPVRE LLQLRRR H R +E+ AA+AAIERET+AD  AI+ERLRSAE+LKQ 
Sbjct:  125 LQSLASSRLMPVRERLLQLRRRLHGRGEELTAARAAIERETLADAEAIVERLRSAETLKQA 185
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BLAST of mRNA_H-elongata_contig202087.5718.1 vs. uniprot
Match: A0A835Z0R6_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0R6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 6.130e-13
Identity = 40/61 (65.57%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 MQTLLSSRLMPVREHLLQLRRRYHIRADEVKAAKAAIERETMADDGAILERLRSAESLKQV 183
            +Q L++S+L+P RE LLQLRRR   R +EV++AKAAIERETMAD   ILERLRSAE+LK  
Sbjct:  192 LQALVTSKLLPAREQLLQLRRRLLARGEEVQSAKAAIERETMADAHTILERLRSAEALKMA 252
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BLAST of mRNA_H-elongata_contig202087.5718.1 vs. uniprot
Match: A0A6H5JBH8_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH8_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.000e-8
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    4 QTLLSSRLMPVREHL------LQLRRRYHIRADEVKAAKAAIERETMADDGAILERLRSAESLKQV 183
            Q  L   ++P+RE        LQLRRR H R +E++AA+AAIERET+AD  AI+ERLRSAE+LKQ 
Sbjct:  170 QQALGHTVVPLREAYSRRLSRLQLRRRLHGRGEELRAARAAIERETLADAEAIVERLRSAETLKQA 235
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BLAST of mRNA_H-elongata_contig202087.5718.1 vs. uniprot
Match: A0A7S3MHC0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHC0_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.370e-7
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    1 MQTLLSSRLMPVREHLLQLRRRYHIRADEVKAAKAAIERETMADDGAILERLRSAESLKQV 183
            ++ +L+ RL+P REHLLQLRR+    ++EV A K  IE+ET  D   IL RL SAES +Q 
Sbjct:  112 LRAILTGRLLPKREHLLQLRRKLQKASEEVHAKKENIEKETRTDTDQILRRLDSAESFRQA 172
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BLAST of mRNA_H-elongata_contig202087.5718.1 vs. uniprot
Match: A0A7S1C795_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C795_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.490e-6
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   16 SSRLMPVREHLLQLRRRYHIRADEVKAAKAAIERETMADDGAILERLRSAESLK 177
            S+ LM  RE ++Q       RA+EVKAA+ AIERET AD  AIL RLRSAE+ K
Sbjct:   24 SATLMAKRERIVQQALSVQARAEEVKAARRAIERETTADTEAILHRLRSAEAFK 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig202087.5718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FKD4_ECTSI1.790e-1572.13EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835Z0R6_9STRA6.130e-1365.57EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A6H5JBH8_9PHAE1.000e-856.06EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S3MHC0_9STRA2.370e-750.82Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S1C795_9STRA4.490e-657.41Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig202087contigH-elongata_contig202087:893..1084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue7.1e-13
Seed eggNOG ortholog2880.D7FKD4
EggNOG OGs2DZTU@1,2S7AK@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930137.1071854-CDS-H-elongata_contig202087:892..10841622930137.1071854-CDS-H-elongata_contig202087:892..1084Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202087 893..1084 -
1691679295.0967367-CDS-H-elongata_contig202087:892..10841691679295.0967367-CDS-H-elongata_contig202087:892..1084Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202087 893..1084 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig202087.5718.1prot_H-elongata_contig202087.5718.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig202087 893..1084 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig202087.5718.1

>prot_H-elongata_contig202087.5718.1 ID=prot_H-elongata_contig202087.5718.1|Name=mRNA_H-elongata_contig202087.5718.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MQTLLSSRLMPVREHLLQLRRRYHIRADEVKAAKAAIERETMADDGAILE
RLRSAESLKQVRR*
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mRNA from alignment at H-elongata_contig202087:893..1084-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig202087.5718.1 ID=mRNA_H-elongata_contig202087.5718.1|Name=mRNA_H-elongata_contig202087.5718.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig202087:893..1084- (Himanthalia elongata Himel1 dioecious)
ATGCAGACCCTTTTGTCTAGCAGGTTAATGCCCGTTCGGGAACATCTCCT
CCAGCTCAGGCGTCGGTACCATATACGCGCGGACGAGGTGAAGGCGGCGA
AGGCGGCAATTGAACGGGAAACCATGGCGGATGACGGGGCAATCTTGGAG
AGGTTACGCTCCGCGGAATCCCTTAAGCAGGTTCGAAGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig202087:893..1084-

>mRNA_H-elongata_contig202087.5718.1 ID=mRNA_H-elongata_contig202087.5718.1|Name=mRNA_H-elongata_contig202087.5718.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig202087:893..1084- (Himanthalia elongata Himel1 dioecious)
ATGCAGACCCTTTTGTCTAGCAGGTTAATGCCCGTTCGGGAACATCTCCT
CCAGCTCAGGCGTCGGTACCATATACGCGCGGACGAGGTGAAGGCGGCGA
AGGCGGCAATTGAACGGGAAACCATGGCGGATGACGGGGCAATCTTGGAG
AGGTTACGCTCCGCGGAATCCCTTAAGCAGGTTCGAAGATAAATGCAGAC
CCTTTTGTCTAGCAGGTTAATGCCCGTTCGGGAACATCTCCTCCAGCTCA
GGCGTCGGTACCATATACGCGCGGACGAGGTGAAGGCGGCGAAGGCGGCA
ATTGAACGGGAAACCATGGCGGATGACGGGGCAATCTTGGAGAGGTTACG
CTCCGCGGAATCCCTTAAGCAGGTTCGAAGATAA
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