mRNA_H-elongata_contig201679.5692.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig201679.5692.1
Unique NamemRNA_H-elongata_contig201679.5692.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig201679.5692.1 vs. uniprot
Match: A0A6H5KTE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTE4_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 3.100e-57
Identity = 98/185 (52.97%), Postives = 115/185 (62.16%), Query Frame = 1 
Query:   49 MAGLPFTTSSYGDAGAWCSITAKDLKSLEWGTFWRFAIIYVPLWTCVAVNAYMYFRVHRAVRGHEAAMAAYAEPEEGDEDEEMGEDSAVTGGESAVVADSGR-----------------------RVGSRGVELSTSTPIIARLQLYPLALVVCWSWATANRVKEAIYPDSDAIFWLYILQYTFQ 534
            MA LP TT +YGDAGAWCSIT+KDLKSLEWGTFWRF++IYVPLW CV VN YM  +VHRA+RG EAAM AY EP  G E +  G                                         R G  G E STS PII RL+LYP+ LV+CWSWAT NR++EAI P +++ FWL+ILQY+FQ
Sbjct:    1 MACLPITTDNYGDAGAWCSITSKDLKSLEWGTFWRFSVIYVPLWVCVGVNGYMCIKVHRAMRGFEAAMVAYVEP--GHEMQAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARTGPGGAETSTSIPIIERLRLYPIVLVICWSWATVNRIREAIEPYAESRFWLFILQYSFQ 183
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BLAST of mRNA_H-elongata_contig201679.5692.1 vs. uniprot
Match: D8LGC7_ECTSI (Related to G-protein coupled receptors n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC7_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 1.020e-52
Identity = 97/188 (51.60%), Postives = 113/188 (60.11%), Query Frame = 1 
Query:    1 QRFVKVMAYCWFVPLVMAGLPFTTSSYGDAGAWCSITAKDLKSLEWGTFWRFAIIYVPLWTCVAVNAYMYFRVHRAVRGHEAAMAAYAEPEEGDEDEE----------MGEDSAVTGGESAVVADSGRRVGSRGVELSTSTPIIARLQLYPLALVVCWSWATANRVKEAIYPDSDAIFWLYILQYTFQ 534
            +RF  VMAYCW +PL MA LPFTT +YG+AGAWCSIT+KDLKSLEWGTFWRFA+IYVPL                     EAAM AY EP  G E +                               R G  GVE STS PII RL+LYP+ LVVCWSWAT NR +EAI P ++++FWL+ILQY+FQ
Sbjct:   64 ERFWTVMAYCWLIPLGMACLPFTTDNYGEAGAWCSITSKDLKSLEWGTFWRFAVIYVPL-------------------VFEAAMVAYVEP--GHETQAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXARTGPGGVETSTSIPIIERLRLYPIVLVVCWSWATVNRTREAIEPYAESLFWLFILQYSFQ 230
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BLAST of mRNA_H-elongata_contig201679.5692.1 vs. uniprot
Match: A0A7S2F7C4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F7C4_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 6.560e-19
Identity = 58/176 (32.95%), Postives = 81/176 (46.02%), Query Frame = 1 
Query:    1 QRFVKVMAYCWFVPLVMAGLPFTTSSYGDAGAWCSITAKDLKSLEWGTFWRFAIIYVPLWTCVAVNAYMYFRVHRAVRGHEAAMAAYAEPEEGDEDEEMGEDSAVTGGESAVVADSGRRVGSRGVELSTSTPIIARLQLYPLALVVCWSWATANRVKEAIYPDSDAIFWLYILQYT 528
            ++    + + W +P + A LPFTT +YG+ GAWCSIT     S   G  W F  I+VP W  +  N  +Y  V+R VRG   + +            EM E S              RR   +  + +     + RLQLYPL LVV W+W T    +  + PD   IFWL  + Y+
Sbjct:  119 RKLPTYIIFSWGLPAIFAALPFTTGNYGNNGAWCSIT-PGTGSYWAGVMWIFVCIFVPCWLAIGYNVTVYLTVNRVVRGLHMSHSM----------SEMDEYS--------------RRTHLK--QRANQNQFVERLQLYPLVLVVSWTWVTIYCFQAMLEPDQH-IFWLAWIGYS 266
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BLAST of mRNA_H-elongata_contig201679.5692.1 vs. uniprot
Match: D8LJZ4_ECTSI (G-protein coupled receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ4_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 5.600e-18
Identity = 52/163 (31.90%), Postives = 73/163 (44.79%), Query Frame = 1 
Query:   31 WFVPLVMAGLPFTTSSYGDAGAWCSITAKDLKSLEWGTFWRFAIIYVPLWTCVAVNAYMYFRVHRAVRGHEAAMAAYAEPEEGDEDEEMGEDSAVTGGESAVVADSGRRVGSRGVELSTSTPIIARLQLYPLALVVCWSWATANRVKEAIYPDSDAIFWLYIL 519
            W   L+   LPFTT SYG  G+WC I       ++ GT WR+ ++Y PLW  +  N  +Y R+   VR     +A                     GG SAV        G    + +  T    RL  YP  L+  W++AT NR++ AI PD   +F L++L
Sbjct:  128 WGSALLSTLLPFTTDSYGSTGSWCWIETNPGSDVDVGTMWRYLVLYCPLWAAIVFNIKVYVRIFSVVRRFSTEIA---------------------GGASAV--------GPSAEQQTRMTKFSKRLVWYPAVLIASWTFATINRIQNAIDPDHP-VFGLFLL 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201679.5692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KTE4_9PHAE3.100e-5752.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGC7_ECTSI1.020e-5251.60Related to G-protein coupled receptors n=1 Tax=Ect... [more]
A0A7S2F7C4_9STRA6.560e-1932.95Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D8LJZ4_ECTSI5.600e-1831.90G-protein coupled receptor n=1 Tax=Ectocarpus sili... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig201679contigH-elongata_contig201679:478..1020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue8.4e-16
Seed eggNOG ortholog2880.D8LJZ4
Preferred nameGCR1
KEGG koko:K08467
GOsGO:0000003,GO:0000278,GO:0001101,GO:0003006,GO:0003674,GO:0004888,GO:0004930,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0005887,GO:0006082,GO:0006109,GO:0006520,GO:0006558,GO:0006570,GO:0006571,GO:0006725,GO:0006807,GO:0007049,GO:0007154,GO:0007165,GO:0007186,GO:0007202,GO:0007275,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009094,GO:0009095,GO:0009314,GO:0009416,GO:0009628,GO:0009637,GO:0009642,GO:0009645,GO:0009719,GO:0009725,GO:0009735,GO:0009737,GO:0009738,GO:0009741,GO:0009742,GO:0009755,GO:0009785,GO:0009787,GO:0009788,GO:0009791,GO:0009845,GO:0009889,GO:0009908,GO:0009937,GO:0009939,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010154,GO:0010162,GO:0010231,GO:0010244,GO:0010431,GO:0010517,GO:0010518,GO:0010646,GO:0010647,GO:0010648,GO:0010675,GO:0010863,GO:0010919,GO:0012505,GO:0014070,GO:0016020,GO:0016021,GO:0016053,GO:0017144,GO:0019220,GO:0019222,GO:0019438,GO:0019752,GO:0021700,GO:0022414,GO:0022611,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030522,GO:0031090,GO:0031224,GO:0031226,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0032504,GO:0032870,GO:0032960,GO:0033993,GO:0038023,GO:0042221,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0043401,GO:0043436,GO:0044093,GO:0044214,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046394,GO:0048316,GO:0048367,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048584,GO:0048585,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051174,GO:0051336,GO:0051345,GO:0051716,GO:0060089,GO:0060191,GO:0060193,GO:0061458,GO:0062012,GO:0065007,GO:0065009,GO:0070887,GO:0071214,GO:0071215,GO:0071229,GO:0071310,GO:0071367,GO:0071383,GO:0071396,GO:0071407,GO:0071478,GO:0071482,GO:0071483,GO:0071495,GO:0071695,GO:0071704,GO:0071944,GO:0080090,GO:0089717,GO:0090351,GO:0090567,GO:0097305,GO:0097306,GO:0097437,GO:0098588,GO:0098805,GO:0104004,GO:1900274,GO:1901360,GO:1901362,GO:1901419,GO:1901420,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901700,GO:1901701,GO:1902221,GO:1902223,GO:1902930,GO:1905957,GO:1905958
EggNOG free text desc.G-protein coupled receptor
EggNOG OGs28MT7@1,2QUBH@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04030
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionRelated to G-protein coupled receptors
Ec32 orthologEc-06_002590.1
Exons1
Model size543
Cds size525
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930134.3735301-UTR-H-elongata_contig201679:477..4951622930134.3735301-UTR-H-elongata_contig201679:477..495Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig201679 478..495 +
1691679293.995892-UTR-H-elongata_contig201679:477..4951691679293.995892-UTR-H-elongata_contig201679:477..495Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig201679 478..495 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930134.3861768-CDS-H-elongata_contig201679:495..10201622930134.3861768-CDS-H-elongata_contig201679:495..1020Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201679 496..1020 +
1691679294.0066712-CDS-H-elongata_contig201679:495..10201691679294.0066712-CDS-H-elongata_contig201679:495..1020Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201679 496..1020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig201679.5692.1prot_H-elongata_contig201679.5692.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig201679 496..1020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig201679.5692.1

>prot_H-elongata_contig201679.5692.1 ID=prot_H-elongata_contig201679.5692.1|Name=mRNA_H-elongata_contig201679.5692.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=175bp
MAYCWFVPLVMAGLPFTTSSYGDAGAWCSITAKDLKSLEWGTFWRFAIIY
VPLWTCVAVNAYMYFRVHRAVRGHEAAMAAYAEPEEGDEDEEMGEDSAVT
GGESAVVADSGRRVGSRGVELSTSTPIIARLQLYPLALVVCWSWATANRV
KEAIYPDSDAIFWLYILQYTFQVN*
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mRNA from alignment at H-elongata_contig201679:478..1020+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig201679.5692.1 ID=mRNA_H-elongata_contig201679.5692.1|Name=mRNA_H-elongata_contig201679.5692.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=543bp|location=Sequence derived from alignment at H-elongata_contig201679:478..1020+ (Himanthalia elongata Himel1 dioecious)
CAGCGCTTCGTGAAGGTGATGGCCTACTGCTGGTTTGTCCCGCTCGTGAT
GGCCGGGCTGCCGTTTACGACTAGCAGTTACGGAGACGCAGGGGCGTGGT
GCTCCATCACGGCGAAGGACCTCAAGTCTCTGGAGTGGGGAACTTTCTGG
CGCTTCGCGATAATCTACGTGCCACTCTGGACCTGCGTGGCGGTAAATGC
CTACATGTACTTCAGGGTGCACCGCGCGGTGCGGGGACACGAGGCGGCGA
TGGCGGCGTACGCGGAGCCGGAAGAAGGGGACGAAGACGAGGAGATGGGA
GAAGACTCAGCGGTGACTGGGGGCGAGAGCGCGGTGGTGGCGGATTCCGG
GAGAAGAGTCGGCTCGCGAGGGGTGGAGCTGTCGACTTCGACGCCCATCA
TCGCCCGATTACAACTGTATCCTCTGGCGCTGGTGGTGTGCTGGAGTTGG
GCTACAGCGAACCGCGTAAAGGAGGCAATATATCCAGACTCGGACGCGAT
TTTCTGGCTCTACATCCTGCAGTACACGTTCCAGGTGAACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig201679:478..1020+

>mRNA_H-elongata_contig201679.5692.1 ID=mRNA_H-elongata_contig201679.5692.1|Name=mRNA_H-elongata_contig201679.5692.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1050bp|location=Sequence derived from alignment at H-elongata_contig201679:478..1020+ (Himanthalia elongata Himel1 dioecious)
ATGGCCTACTGCTGGTTTGTCCCGCTCGTGATGGCCGGGCTGCCGTTTAC
GACTAGCAGTTACGGAGACGCAGGGGCGTGGTGCTCCATCACGGCGAAGG
ACCTCAAGTCTCTGGAGTGGGGAACTTTCTGGCGCTTCGCGATAATCTAC
GTGCCACTCTGGACCTGCGTGGCGGTAAATGCCTACATGTACTTCAGGGT
GCACCGCGCGGTGCGGGGACACGAGGCGGCGATGGCGGCGTACGCGGAGC
CGGAAGAAGGGGACGAAGACGAGGAGATGGGAGAAGACTCAGCGGTGACT
GGGGGCGAGAGCGCGGTGGTGGCGGATTCCGGGAGAAGAGTCGGCTCGCG
AGGGGTGGAGCTGTCGACTTCGACGCCCATCATCGCCCGATTACAACTGT
ATCCTCTGGCGCTGGTGGTGTGCTGGAGTTGGGCTACAGCGAACCGCGTA
AAGGAGGCAATATATCCAGACTCGGACGCGATTTTCTGGCTCTACATCCT
GCAGTACACGTTCCAGGTGAACTAAATGGCCTACTGCTGGTTTGTCCCGC
TCGTGATGGCCGGGCTGCCGTTTACGACTAGCAGTTACGGAGACGCAGGG
GCGTGGTGCTCCATCACGGCGAAGGACCTCAAGTCTCTGGAGTGGGGAAC
TTTCTGGCGCTTCGCGATAATCTACGTGCCACTCTGGACCTGCGTGGCGG
TAAATGCCTACATGTACTTCAGGGTGCACCGCGCGGTGCGGGGACACGAG
GCGGCGATGGCGGCGTACGCGGAGCCGGAAGAAGGGGACGAAGACGAGGA
GATGGGAGAAGACTCAGCGGTGACTGGGGGCGAGAGCGCGGTGGTGGCGG
ATTCCGGGAGAAGAGTCGGCTCGCGAGGGGTGGAGCTGTCGACTTCGACG
CCCATCATCGCCCGATTACAACTGTATCCTCTGGCGCTGGTGGTGTGCTG
GAGTTGGGCTACAGCGAACCGCGTAAAGGAGGCAATATATCCAGACTCGG
ACGCGATTTTCTGGCTCTACATCCTGCAGTACACGTTCCAGGTGAACTAA
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