prot_H-elongata_contig20000.5632.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig20000.5632.1
Unique Nameprot_H-elongata_contig20000.5632.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length654
Homology
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BLAST of mRNA_H-elongata_contig20000.5632.1 vs. uniprot
Match: D8LT01_ECTSI (DNA polymerase delta subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT01_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 4.210e-42
Identity = 100/190 (52.63%), Postives = 119/190 (62.63%), Query Frame = 0 
Query:    1 MLYDFCEKQGEQKVSSTYLVMGRGRDERGAGPMEIKLVPAKALDETRKSLVEITSVHVYSVQPASASEPM-DLSAQLWATDSEHSKEMVAGSTDAGASLRSHRLSGVRCAEIVDEPLPTAPAPPDNFQEESVFDLPGGAHKGASATTTAL-----GMHKPKGKTIAPKDFFASTTTGGGKGKGKANHVKE 184
            MLYDFC++QGE+KVS+TYLV+GR     G G +E+KLV A+ LD TRK+L  +T VHVYSVQPA  S+P  D+S QLWATD EH+KEMV  ST+AGA+LR+HRLSGVRC E VD P+P AP                                     KPKGK IAPKDFFA+   G  KGKGKA   K+
Sbjct:   50 MLYDFCQRQGERKVSATYLVVGRSGIG-GFGAVEVKLVSAEGLDSTRKALETVTCVHVYSVQPAPCSQPAADMSTQLWATDLEHTKEMVEESTEAGANLRTHRLSGVRCPEGVDVPVPKAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNASSKPKGKAIAPKDFFAAA--GXXKGKGKAGEGKK 236
[Close]
BLAST of mRNA_H-elongata_contig20000.5632.1 vs. uniprot
Match: A0A6H5KL09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL09_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 5.990e-27
Identity = 81/154 (52.60%), Postives = 96/154 (62.34%), Query Frame = 0 
Query:  512 ASVSVKRKGRYDSGDEEPDPKEKAPVSGAIDKFTARAGG----AEGGATKRTKVVLKTKTYMDGGYMKRVNEEVEVTDDEEEPLKPAHTNKAHTLPLDGKSVKNGVEKKV-GGLDAPGGK----GSGKTKKA---GRVKAVGKQSNMMSFFKKA 653
            AS S KRKGRYD            PV GA+DKFTA+  G    + G A KRTK VLK++TY +GGYMK VNEEVEVTDDEEE L+PA TN++ T P   K  K GVE K  G ++ P G     G+  TKK       K+ GKQ++MMSFFKKA
Sbjct:  190 ASTSAKRKGRYDXXXXXXXXXXXEPVRGAMDKFTAKGNGTGVDSSGVAVKRTKTVLKSRTYFEGGYMKTVNEEVEVTDDEEEALQPAKTNQSRTPPPGTKKAKIGVENKAEGSVETPAGAKGKDGATATKKKTAKAAPKSGGKQASMMSFFKKA 343
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20000.5632.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT01_ECTSI4.210e-4252.63DNA polymerase delta subunit 3 n=1 Tax=Ectocarpus ... [more]
A0A6H5KL09_9PHAE5.990e-2752.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041913DNA polymerase delta subunit 3 superfamilyGENE3D1.10.10.1300coord: 1..114
e-value: 1.2E-13
score: 53.3
IPR019038DNA polymerase delta subunit 3PFAMPF09507CDC27coord: 1..354
e-value: 1.2E-18
score: 67.8
IPR019038DNA polymerase delta subunit 3PANTHERPTHR17598FAMILY NOT NAMEDcoord: 385..652
coord: 1..331

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20000contigH-elongata_contig20000:1333..6375 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20000.5632.1mRNA_H-elongata_contig20000.5632.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig20000 43..6902 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig20000.5632.1 ID=prot_H-elongata_contig20000.5632.1|Name=mRNA_H-elongata_contig20000.5632.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=654bp
MLYDFCEKQGEQKVSSTYLVMGRGRDERGAGPMEIKLVPAKALDETRKSL
VEITSVHVYSVQPASASEPMDLSAQLWATDSEHSKEMVAGSTDAGASLRS
HRLSGVRCAEIVDEPLPTAPAPPDNFQEESVFDLPGGAHKGASATTTALG
MHKPKGKTIAPKDFFASTTTGGGKGKGKANHVKEEMEGGGEGVNKPAPRG
EKGGIGSFFGKAAAVPPSKKANRVKKEIEVTASDVNIAKREKGSLKGKDV
INVKEPPSRSPPTRSPPTAKSKKSLGNGELRETCEEESAGVKGRTKTNGP
SAKSKKPRLSKLAKKDEEDEEMDGESGRVVQKQEGELKKPRLSKLALEKD
EGDEEVGGGIGRVFQKLEGWEKAGGDSSDEEEWNGEESDDAGAGSRKKTV
VVAAKKMKGNGGSSRAPTLGESSKSMECNEDASKKGGEHSTSPNGTTPAP
PVKKSRKSGASAKNGSEDDDESPAGRSKRKTKAIATSGAGGEAKCGKDED
EDSKPRRSKGKASVSVKRKGRYDSGDEEPDPKEKAPVSGAIDKFTARAGG
AEGGATKRTKVVLKTKTYMDGGYMKRVNEEVEVTDDEEEPLKPAHTNKAH
TLPLDGKSVKNGVEKKVGGLDAPGGKGSGKTKKAGRVKAVGKQSNMMSFF
KKA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041913POLD3_sf
IPR019038POLD3