mRNA_H-elongata_contig19982.5623.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19982.5623.1
Unique NamemRNA_H-elongata_contig19982.5623.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19982.5623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19982contigH-elongata_contig19982:6049..6860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size139
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930126.309933-CDS-H-elongata_contig19982:6050..60731622930126.309933-CDS-H-elongata_contig19982:6050..6073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19982 6051..6073 -
1691679291.0322154-CDS-H-elongata_contig19982:6050..60731691679291.0322154-CDS-H-elongata_contig19982:6050..6073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19982 6051..6073 -
1622930126.3247273-CDS-H-elongata_contig19982:6748..68601622930126.3247273-CDS-H-elongata_contig19982:6748..6860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19982 6749..6860 -
1691679291.044668-CDS-H-elongata_contig19982:6748..68601691679291.044668-CDS-H-elongata_contig19982:6748..6860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19982 6749..6860 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19982.5623.1prot_H-elongata_contig19982.5623.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19982 6051..6860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19982.5623.1

>prot_H-elongata_contig19982.5623.1 ID=prot_H-elongata_contig19982.5623.1|Name=mRNA_H-elongata_contig19982.5623.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
VYEYCDTHTCSDGYEYKDGYETTVCDGECNDATCCDEIVYEYCDT
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mRNA from alignment at H-elongata_contig19982:6049..6860-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19982.5623.1 ID=mRNA_H-elongata_contig19982.5623.1|Name=mRNA_H-elongata_contig19982.5623.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=812bp|location=Sequence derived from alignment at H-elongata_contig19982:6049..6860- (Himanthalia elongata Himel1 dioecious)
GTATATGAGTACTGTGACACACACACCTGCTCCGACGGCTACGAGTACAA
GGATGGTTACGAGACTACTGTATGCGACGGCGAATGCAACGATGCCACGT
GCTGCGACGAAAGTGAGTGTGGTTTCTCTCACTTGAGATGTTTGGATATT
TGCCGTTAGCTCAACAAACGGTTCGTTTAACATTTTTGCGGTCATGCTAG
TTTTCAACCGTTTTGGTTATGAGAAAAAAGGCGTAGCTTGTAGACTTTCG
TCGGTCTTCTGTTTCTCTTAAGAACGCCGTTGCGTCACCGTGAAATGGGT
GCGTTACCATGATGGACTGCCACCGACTGATGCACTATTGCCGCGTGTAC
TATTTGTTCTTCATCACTAACGTGGTGCCGTCTGCCCCCACAGTATCATA
TTAGTAGTGAGGCACATGCACGTTCTCCGACGACCTCCGAGTACTAGGAT
TATTAAAACACTATTGAGTCCGACGGTAAATGCGATGATGAGAACGGCTC
TAAGAAGAGTTCGTGTACTCTCTCTCGCAAAGTCATCTCCGATTATTGAG
CTTAACTCAGCTAAGTGTTCGTTTGTAGGTTTTGATGCGTGTAGTGGGTG
GCCGTCCTGGTCTGTTTCAGAAAAGCGAAAAATAAGTCCACCTTGTCTCT
TTTACTTTTGCTAAGAGGGTATATGGGCCGTCGTATAACAAATGGACTAC
TGGCATAAACTGCAACTGACTGATTGCACCATTGCCGCCCGTGTCACGTA
TTCCGAATCAATGTCGTGGTACCGTCCGCCCTCACAGTAGTATACGAGTA
CTGTGACACACA
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Coding sequence (CDS) from alignment at H-elongata_contig19982:6049..6860-

>mRNA_H-elongata_contig19982.5623.1 ID=mRNA_H-elongata_contig19982.5623.1|Name=mRNA_H-elongata_contig19982.5623.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig19982:6049..6860- (Himanthalia elongata Himel1 dioecious)
GTATATGAGTACTGTGACACACACACCTGCTCCGACGGCTACGAGTACAA
GGATGGTTACGAGACTACTGTATGCGACGGCGAATGCAACGATGCCACGT
GCTGCGACGAAAGTATATGAGTACTGTGACACACACACCTGCTCCGACGG
CTACGAGTACAAGGATGGTTACGAGACTACTGTATGCGACGGCGAATGCA
ACGATGCCACGTGCTGCGACGAAATAGTATACGAGTACTGTGACACATAG
TATACGAGTACTGTGACACA
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