mRNA_H-elongata_contig198333.5556.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig198333.5556.1
Unique NamemRNA_H-elongata_contig198333.5556.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig198333.5556.1 vs. uniprot
Match: D7FSI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSI4_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 3.550e-15
Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 1
Query:   46 RPAALAIRAFNVETAAIKDSVRGNLMPGRMRIQWWKDCLSGDF 174
            RPA+LAIRAFNVETAAIKDSVRGN+MPG+MR+QWWKD ++  F
Sbjct:   41 RPASLAIRAFNVETAAIKDSVRGNVMPGKMRMQWWKDTMADVF 83          
BLAST of mRNA_H-elongata_contig198333.5556.1 vs. uniprot
Match: A0A4D9CW87_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CW87_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 5.060e-9
Identity = 25/41 (60.98%), Postives = 33/41 (80.49%), Query Frame = 1
Query:   43 NRPAALAIRAFNVETAAIKDSVRGNLMPGRMRIQWWKDCLS 165
            +R A  A+RAFNVETA IKD  RGN +PG+MR+QWW++ +S
Sbjct:   51 SRRAYFALRAFNVETALIKDVARGNTLPGQMRMQWWREVIS 91          
BLAST of mRNA_H-elongata_contig198333.5556.1 vs. uniprot
Match: A0A5C5FLZ8_9BASI (Uncharacterized protein (Fragment) n=1 Tax=Rhodotorula diobovata TaxID=5288 RepID=A0A5C5FLZ8_9BASI)

HSP 1 Score: 52.0 bits (123), Expect = 1.680e-7
Identity = 28/51 (54.90%), Postives = 33/51 (64.71%), Query Frame = 1
Query:   22 YLSTFCPNR--PAALAIRAFNVETAAIKDSVRGNLMPGRMRIQWWKDCLSG 168
            + S F P +  PA  A+RAFNVE AA+ D V  N M GRMR QWWKD + G
Sbjct:   12 WASYFYPQQLQPAYWALRAFNVELAALPDQV-SNQMIGRMRFQWWKDAVKG 61          
BLAST of mRNA_H-elongata_contig198333.5556.1 vs. uniprot
Match: A0A835YPK2_9STRA (Squalene/phytoene synthase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPK2_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.190e-7
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:   46 RPAALAIRAFNVETAAIKDSVRGNLMPGRMRIQWWKDCLS 165
            RP+ LA+RAFNVE A+IK++VR N   G MR+QWW D ++
Sbjct:   63 RPSLLALRAFNVEIASIKEAVRNNTRSGTMRMQWWMDVVN 102          
BLAST of mRNA_H-elongata_contig198333.5556.1 vs. uniprot
Match: F0VYL5_9STRA (Uncharacterized protein AlNc14C1G22 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VYL5_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.110e-6
Identity = 26/57 (45.61%), Postives = 34/57 (59.65%), Query Frame = 1
Query:   22 YLSTFC------PNRPAALAIRAFNVETAAIKDSVRGNLMPGRMRIQWWKDCLSGDF 174
            Y + FC       +R A  AIRAFNVETA I+D   G L PG +R+QWW++ +   F
Sbjct:   36 YTNYFCGLLFPQDHREAYFAIRAFNVETARIRDMAHGKLAPGTIRMQWWREKIQSLF 92          
BLAST of mRNA_H-elongata_contig198333.5556.1 vs. uniprot
Match: A0A7R9YES8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YES8_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.540e-6
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1
Query:   46 RPAALAIRAFNVETAAIKDSVRGNLMPGRMRIQWWKDCLSGDF 174
            +PA  AIRAFNVETA IKD++ GN   GR+RIQ+W++ +   F
Sbjct:   58 QPALAAIRAFNVETAVIKDAISGNSDMGRIRIQFWRELIRDVF 100          
BLAST of mRNA_H-elongata_contig198333.5556.1 vs. uniprot
Match: A0A316ZCR7_9BASI (Uncharacterized protein n=1 Tax=Tilletiopsis washingtonensis TaxID=58919 RepID=A0A316ZCR7_9BASI)

HSP 1 Score: 52.4 bits (124), Expect = 2.160e-6
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 1
Query:   46 RPAALAIRAFNVETAAIKDSVRGNLMPGRMRIQWWKDCLSGDF 174
            RP  LA+RAFNVETA IKD+V    + GR+R+ WW+D + G F
Sbjct:   72 RPHYLALRAFNVETATIKDNVSNETL-GRIRVGWWRDAVRGAF 113          
BLAST of mRNA_H-elongata_contig198333.5556.1 vs. uniprot
Match: A0A4R3MJ13_9HYPH (Phytoene synthase n=1 Tax=Tepidamorphus gemmatus TaxID=747076 RepID=A0A4R3MJ13_9HYPH)

HSP 1 Score: 51.2 bits (121), Expect = 5.240e-6
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   22 YLST-FCP--NRPAALAIRAFNVETAAIKDSVRGNLMPGRMRIQWWKDCLSG 168
            YL+T F P   RPA  A+ AFN+E A ++D V   L PG MR+QWW+D L+G
Sbjct:   23 YLTTLFAPADRRPALQALYAFNIEVARVRDLVSDPL-PGEMRLQWWRDALTG 73          
BLAST of mRNA_H-elongata_contig198333.5556.1 vs. uniprot
Match: A0A429YYX4_9HYPH (Phytoene/squalene synthase family protein n=1 Tax=Aquibium carbonis TaxID=2495581 RepID=A0A429YYX4_9HYPH)

HSP 1 Score: 50.4 bits (119), Expect = 9.550e-6
Identity = 21/40 (52.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:   46 RPAALAIRAFNVETAAIKDSVRGNLMPGRMRIQWWKDCLS 165
            RPA LA+ AFN+E A ++D+VR  L PG +R+QWW+D ++
Sbjct:   31 RPALLALYAFNIEVARVRDAVREPL-PGEIRLQWWRDAIA 69          
BLAST of mRNA_H-elongata_contig198333.5556.1 vs. uniprot
Match: UPI001903A0A2 (isoprenoid synthase domain-containing protein n=2 Tax=Cantharellus anzutake TaxID=1750568 RepID=UPI001903A0A2)

HSP 1 Score: 50.4 bits (119), Expect = 1.030e-5
Identity = 21/40 (52.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:   46 RPAALAIRAFNVETAAIKDSVRGNLMPGRMRIQWWKDCLS 165
            RP+  AIRAFN+ETA +KD V  + + GR+R+QWW+D ++
Sbjct:   60 RPSFFAIRAFNIETATVKDQVSNSAL-GRIRMQWWRDTVN 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198333.5556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSI4_ECTSI3.550e-1579.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9CW87_9STRA5.060e-960.98Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A5C5FLZ8_9BASI1.680e-754.90Uncharacterized protein (Fragment) n=1 Tax=Rhodoto... [more]
A0A835YPK2_9STRA3.190e-757.50Squalene/phytoene synthase-domain-containing prote... [more]
F0VYL5_9STRA1.110e-645.61Uncharacterized protein AlNc14C1G22 n=1 Tax=Albugo... [more]
A0A7R9YES8_9STRA1.540e-655.81Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A316ZCR7_9BASI2.160e-655.81Uncharacterized protein n=1 Tax=Tilletiopsis washi... [more]
A0A4R3MJ13_9HYPH5.240e-651.92Phytoene synthase n=1 Tax=Tepidamorphus gemmatus T... [more]
A0A429YYX4_9HYPH9.550e-652.50Phytoene/squalene synthase family protein n=1 Tax=... [more]
UPI001903A0A21.030e-552.50isoprenoid synthase domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198333contigH-elongata_contig198333:889..1062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue1.4e-12
Seed eggNOG ortholog2880.D7FSI4
KEGG koko:K18163
KEGG Pathwayko04714,map04714
EggNOG free text desc.mitochondrial respiratory chain complex I assembly
EggNOG OGsCOG1562@1,KOG4411@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionIsoprenoid synthase domain
Ec32 orthologEc-11_003830.1
Exons1
Model size174
Cds size174
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930120.434504-CDS-H-elongata_contig198333:888..10621622930120.434504-CDS-H-elongata_contig198333:888..1062Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198333 889..1062 +
1691679288.5338926-CDS-H-elongata_contig198333:888..10621691679288.5338926-CDS-H-elongata_contig198333:888..1062Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198333 889..1062 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198333.5556.1prot_H-elongata_contig198333.5556.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig198333 889..1062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig198333.5556.1

>prot_H-elongata_contig198333.5556.1 ID=prot_H-elongata_contig198333.5556.1|Name=mRNA_H-elongata_contig198333.5556.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
MGLPFPPYLSTFCPNRPAALAIRAFNVETAAIKDSVRGNLMPGRMRIQWW
KDCLSGDF
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mRNA from alignment at H-elongata_contig198333:889..1062+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig198333.5556.1 ID=mRNA_H-elongata_contig198333.5556.1|Name=mRNA_H-elongata_contig198333.5556.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig198333:889..1062+ (Himanthalia elongata Himel1 dioecious)
ATGGGGCTTCCTTTTCCCCCGTACTTGTCCACATTCTGTCCCAACAGGCC AGCGGCTTTGGCCATAAGAGCGTTTAACGTGGAAACCGCGGCCATCAAGG ATTCGGTGAGAGGCAATCTTATGCCGGGGAGGATGCGTATCCAGTGGTGG AAAGACTGCCTCTCAGGTGATTTC
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Coding sequence (CDS) from alignment at H-elongata_contig198333:889..1062+

>mRNA_H-elongata_contig198333.5556.1 ID=mRNA_H-elongata_contig198333.5556.1|Name=mRNA_H-elongata_contig198333.5556.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig198333:889..1062+ (Himanthalia elongata Himel1 dioecious)
ATGGGGCTTCCTTTTCCCCCGTACTTGTCCACATTCTGTCCCAACAGGCC
AGCGGCTTTGGCCATAAGAGCGTTTAACGTGGAAACCGCGGCCATCAAGG
ATTCGGTGAGAGGCAATCTTATGCCGGGGAGGATGCGTATCCAGTGGTGG
AAAGACTGCCTCTCAGGTGATTTCATGGGGCTTCCTTTTCCCCCGTACTT
GTCCACATTCTGTCCCAACAGGCCAGCGGCTTTGGCCATAAGAGCGTTTA
ACGTGGAAACCGCGGCCATCAAGGATTCGGTGAGAGGCAATCTTATGCCG
GGGAGGATGCGTATCCAGTGGTGGAAAGACTGCCTCTCAGGTGATTTC
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