mRNA_H-elongata_contig198294.5553.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig198294.5553.1
Unique NamemRNA_H-elongata_contig198294.5553.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig198294.5553.1 vs. uniprot
Match: D7FHI0_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI0_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 2.210e-33
Identity = 66/92 (71.74%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    1 LAPLFGGDGLAVVDLLLVQPELEMRLHAVELVSALLFHKKVGMAFVRRGWMKELLRLGAMEDA-AFIEPEVAFCLQNFATSGGVMEAVCRVQ 273
            L PLF GDGLAVVD+LL  P+LE+R HAVEL+S LL HKKVG+AFVRRGW++ LLRLGA+ED  AF+EPEV +CL   A+SGGVMEAVCR Q
Sbjct:  417 LTPLFSGDGLAVVDVLLANPQLEIRGHAVELLSTLLVHKKVGLAFVRRGWVRTLLRLGALEDGTAFLEPEVGYCLHVLASSGGVMEAVCRAQ 508
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BLAST of mRNA_H-elongata_contig198294.5553.1 vs. uniprot
Match: A0A6H5JDL7_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL7_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 2.220e-33
Identity = 66/92 (71.74%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    1 LAPLFGGDGLAVVDLLLVQPELEMRLHAVELVSALLFHKKVGMAFVRRGWMKELLRLGAMEDA-AFIEPEVAFCLQNFATSGGVMEAVCRVQ 273
            L PLF GDGLAVVDLLL  P+LE+R HAVEL+S LL HKKVG+AFVRRGW++ LLRLGA++D  AF+EPEV +CL   A+SGGVMEAVCR Q
Sbjct:  497 LTPLFSGDGLAVVDLLLANPQLEIRGHAVELLSTLLVHKKVGLAFVRRGWVRTLLRLGALDDGNAFLEPEVGYCLHVLASSGGVMEAVCRAQ 588
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198294.5553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHI0_ECTSI2.210e-3371.74LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JDL7_9PHAE2.220e-3371.74LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198294contigH-elongata_contig198294:2..829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue1.3e-28
Seed eggNOG ortholog2880.D7FHI0
Preferred nameVPRBP
KEGG koko:K10744,ko:K11789
KEGG Pathwayko03030,map03030
GOsGO:0000122,GO:0000151,GO:0001650,GO:0001775,GO:0002200,GO:0002376,GO:0002520,GO:0002521,GO:0002562,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016301,GO:0016310,GO:0016444,GO:0016569,GO:0016570,GO:0016572,GO:0016740,GO:0016772,GO:0016773,GO:0018107,GO:0018193,GO:0018210,GO:0019219,GO:0019222,GO:0019538,GO:0030097,GO:0030098,GO:0030154,GO:0030183,GO:0030331,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033151,GO:0034641,GO:0035173,GO:0035184,GO:0035212,GO:0035257,GO:0035258,GO:0035405,GO:0036211,GO:0040008,GO:0042113,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045321,GO:0045892,GO:0045934,GO:0046483,GO:0046649,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051427,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990164,GO:1990234,GO:1990244,GO:1990245,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.histone kinase activity (H2A-T120 specific)
EggNOG OGsKOG1832@1,KOG1832@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03032,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-25_002300.1
Exons2
Model size274
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930120.0186741-CDS-H-elongata_contig198294:1..1211622930120.0186741-CDS-H-elongata_contig198294:1..121Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198294 2..121 +
1691679288.3729806-CDS-H-elongata_contig198294:1..1211691679288.3729806-CDS-H-elongata_contig198294:1..121Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198294 2..121 +
1622930120.0341833-CDS-H-elongata_contig198294:675..8281622930120.0341833-CDS-H-elongata_contig198294:675..828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198294 676..828 +
1691679288.3845966-CDS-H-elongata_contig198294:675..8281691679288.3845966-CDS-H-elongata_contig198294:675..828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198294 676..828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198294.5553.1prot_H-elongata_contig198294.5553.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig198294 2..828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig198294.5553.1

>prot_H-elongata_contig198294.5553.1 ID=prot_H-elongata_contig198294.5553.1|Name=mRNA_H-elongata_contig198294.5553.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
LAPLFGGDGLAVVDLLLVQPELEMRLHAVELVSALLFHKKVGMAFVRRGW
MKELLRLGAMEDAAFIEPEVAFCLQNFATSGGVMEAVCRVQ
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mRNA from alignment at H-elongata_contig198294:2..829+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig198294.5553.1 ID=mRNA_H-elongata_contig198294.5553.1|Name=mRNA_H-elongata_contig198294.5553.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=828bp|location=Sequence derived from alignment at H-elongata_contig198294:2..829+ (Himanthalia elongata Himel1 dioecious)
CTGGCGCCACTGTTTGGCGGTGACGGATTGGCGGTGGTGGATCTTCTACT
CGTGCAGCCCGAGCTGGAGATGCGTCTCCACGCCGTTGAGCTTGTGTCCG
CGCTGCTCTTCCACAAGAAGGTGGGGTTTGGAAAGTATGGAAGGGGAAGT
GAGGTGTGGGGGGGGGGTAATGGCGGTTGCAGTCTTTCCGCACGAGATTC
AAAGTGATATGTCCCCCACACACACCGCCATAAGGGGGAAAAGGCGCGTG
CGCCCGGGCAGATCCCACTTTGGGGACTAATAGGAGCTTTTTATTTGGCT
GACGCTACTGAGGAAAACCATAGCCACACCAGTACAGCACTTGCACATCG
TTTTAAGGAAGAAAGGAGGGGTGCGGGAGGGGGGGACTAAAGGCGAAAAA
TAGGGATCGAAACAAAGATGCTCCCGCCCCGCCGCAATTGTGCCCTCTGC
AACCGAGCGATCGATAAGATCCCCCCTCCATTTTCTGTACCGAGATTTTG
TGGATGGAGCGGCGCGCGCGCTTCGGGCAGCGCCGCAACCCCTTCGAATG
CGATACGTTACCGACCGAGTGTGGATGAGTACTGATTGTCGTATTGTCGC
GGATGATCCACTTAGCCGTAACGACATCCGCGATTCCCCCCCTGCTTCTT
GCCGCTGCCGCTGTGGGAGTTCAGGTGGGAATGGCTTTCGTGAGACGGGG
ATGGATGAAGGAGCTATTGCGTCTAGGAGCAATGGAGGACGCGGCGTTCA
TTGAACCCGAGGTGGCGTTCTGTCTTCAGAACTTCGCCACCAGTGGCGGT
GTAATGGAGGCAGTTTGCCGTGTTCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig198294:2..829+

>mRNA_H-elongata_contig198294.5553.1 ID=mRNA_H-elongata_contig198294.5553.1|Name=mRNA_H-elongata_contig198294.5553.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig198294:2..829+ (Himanthalia elongata Himel1 dioecious)
CTGGCGCCACTGTTTGGCGGTGACGGATTGGCGGTGGTGGATCTTCTACT
CGTGCAGCCCGAGCTGGAGATGCGTCTCCACGCCGTTGAGCTTGTGTCCG
CGCTGCTCTTCCACAAGAAGCTGGCGCCACTGTTTGGCGGTGACGGATTG
GCGGTGGTGGATCTTCTACTCGTGCAGCCCGAGCTGGAGATGCGTCTCCA
CGCCGTTGAGCTTGTGTCCGCGCTGCTCTTCCACAAGAAGGTGGGAATGG
CTTTCGTGAGACGGGGATGGATGAAGGAGCTATTGCGTCTAGGAGCAATG
GAGGACGCGGCGTTCATTGAACCCGAGGTGGCGTTCTGTCTTCAGAACTT
CGCCACCAGTGGCGGTGTAATGGAGGCAGTTTGCCGTGTTCAGGTGGGAA
TGGCTTTCGTGAGACGGGGATGGATGAAGGAGCTATTGCGTCTAGGAGCA
ATGGAGGACGCGGCGTTCATTGAACCCGAGGTGGCGTTCTGTCTTCAGAA
CTTCGCCACCAGTGGCGGTGTAATGGAGGCAGTTTGCCGTGTTCAG
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